mRNA_9286 (mRNA) Tribonema minus UTEX_B_3156
|
Overview
Homology
BLAST of jgi.p|Trimin1|62533 vs. uniprot
Match: A0A835YTZ2_9STRA (Mitochondrial large subunit ribosomal protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTZ2_9STRA) HSP 1 Score: 307 bits (786), Expect = 4.740e-105 Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 1
Query: 31 MLARKAIAAGCRAQQQRLQHSNTFLRKVVNAKRAREVRIETALDAPQTPPLKYIPTAQPAFVLAQGWAPPPEAPPTDIPFQVPRTGVSAALPVYTTYKNGRTRVMTVVRHVKGDVEEFSEELKKVCNAEVVERRGNSIQVKGNHVKGVQEWLLGLGF 501
MLARKAIAAGCRAQQQRLQHSNTFLRKVVNAKRAREVRIETALDAPQTPPLKYIPTAQPAFVLAQGWAPPPEAPPTDIPFQVPRTGVSAALPVYTTYKNGRTRVMTVVRHVKGDVEEFSEELKKVCNAEVVERRGNSIQVKGNHVKGVQEWLLGLGF
Sbjct: 1 MLARKAIAAGCRAQQQRLQHSNTFLRKVVNAKRAREVRIETALDAPQTPPLKYIPTAQPAFVLAQGWAPPPEAPPTDIPFQVPRTGVSAALPVYTTYKNGRTRVMTVVRHVKGDVEEFSEELKKVCNAEVVERRGNSIQVKGNHVKGVQEWLLGLGF 157
BLAST of jgi.p|Trimin1|62533 vs. uniprot
Match: A0A484E697_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E697_BRELC) HSP 1 Score: 112 bits (279), Expect = 4.210e-28 Identity = 64/152 (42.11%), Postives = 86/152 (56.58%), Query Frame = 1
Query: 70 QQQRLQHSNTFLRKVVNAKRAREVRIETALDAPQ--------TPPLKYIPTAQPAFVLAQGWAPPPEAPPTDIPFQVPRTGVSAALPVYTTYKNGRTRVMTVVRHVKGDVEEFSEELKKVCNAEVVERRGNSIQVKGNHVKGVQEWLLGLGF 501
Q++ L +N RK N + R+ R L A Q PPLKY PT P V GW+P PEAP T +PF V RT LPVY Y+NGRTRV+T++R +GD E +E+ K+C + V R ++V G+H V++WL+GLGF
Sbjct: 3 QRRLLTSTNAIERKASNRQIRRKTRHPANLRALQRQPQEELIVPPLKYEPTYVPEKVSFNGWSPAPEAPLTGLPFHVKRTATGLQLPVYRDYRNGRTRVLTILRRYRGDEHELRDEMSKICEGKEVVIRPGRMEVVGDHFSDVRKWLVGLGF 154
BLAST of jgi.p|Trimin1|62533 vs. uniprot
Match: M4BYA2_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BYA2_HYAAE) HSP 1 Score: 111 bits (278), Expect = 5.940e-28 Identity = 54/114 (47.37%), Postives = 73/114 (64.04%), Query Frame = 1
Query: 160 DAPQTPPLKYIPTAQPAFVLAQGWAPPPEAPPTDIPFQVPRTGVSAALPVYTTYKNGRTRVMTVVRHVKGDVEEFSEELKKVCNAEVVERRGNSIQVKGNHVKGVQEWLLGLGF 501
D PPLKY PT P V GW+P PE+P D+PF V RT + LPVY Y+NGRTRV+T++R KGD +E +E+ KVC + V R ++V G+H +++WL+GLGF
Sbjct: 41 DEVAVPPLKYEPTYVPETVSFNGWSPAPESPLPDLPFHVKRTALGLQLPVYRDYRNGRTRVLTILRRYKGDEQELRDEMSKVCEGKQVTARPGRLEVVGDHAVDIRKWLVGLGF 154
BLAST of jgi.p|Trimin1|62533 vs. uniprot
Match: D0NCG0_PHYIT (Uncharacterized protein n=8 Tax=Peronosporaceae TaxID=4777 RepID=D0NCG0_PHYIT) HSP 1 Score: 107 bits (267), Expect = 2.660e-26 Identity = 52/109 (47.71%), Postives = 71/109 (65.14%), Query Frame = 1
Query: 175 PPLKYIPTAQPAFVLAQGWAPPPEAPPTDIPFQVPRTGVSAALPVYTTYKNGRTRVMTVVRHVKGDVEEFSEELKKVCNAEVVERRGNSIQVKGNHVKGVQEWLLGLGF 501
PPLKY PT P V GW+P PEAP + +PF V RT LPVY ++NGRTRV+T++R KGD +E +E+ KVC + V R ++V G+H +++WL+GLGF
Sbjct: 46 PPLKYEPTYVPEKVSFNGWSPAPEAPLSGLPFHVKRTATGMQLPVYRDFRNGRTRVLTILRRYKGDEQELRDEMSKVCQGKEVIVRPGRLEVVGDHASDIRKWLVGLGF 154
BLAST of jgi.p|Trimin1|62533 vs. uniprot
Match: A0A0W8C9Q0_PHYNI (Uncharacterized protein n=7 Tax=Phytophthora TaxID=4783 RepID=A0A0W8C9Q0_PHYNI) HSP 1 Score: 110 bits (275), Expect = 3.140e-26 Identity = 66/161 (40.99%), Postives = 93/161 (57.76%), Query Frame = 1
Query: 76 QRLQHSNTFLRKVVNAKRA-------REVRIETALDA--------PQ----TPPLKYIPTAQPAFVLAQGWAPPPEAPPTDIPFQVPRTGVSAALPVYTTYKNGRTRVMTVVRHVKGDVEEFSEELKKVCNAEVVERRGNSIQVKGNHVKGVQEWLLGLGF 501
Q+L+ S+ F R+V+ + A R++R +T A PQ PPLKY PT P V GW+P PEAP +PF V RT V LPVY ++NGRTRV+T++R KGD +E +E+ KVC + V R ++V G+H +++WL+GLGF
Sbjct: 114 QQLRSSSMFQRRVIASANAVERVASNRQIRRKTRHPANLRALQRQPQEEVVVPPLKYEPTYVPEKVSFNGWSPAPEAPLPGLPFHVKRTAVGLQLPVYRDFRNGRTRVLTILRRYKGDEQELRDEMSKVCQGKEVIVRPGRLEVVGDHASDIRKWLVGLGF 274
BLAST of jgi.p|Trimin1|62533 vs. uniprot
Match: A0A5D6Y004_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y004_9STRA) HSP 1 Score: 107 bits (266), Expect = 3.860e-26 Identity = 62/157 (39.49%), Postives = 88/157 (56.05%), Query Frame = 1
Query: 31 MLARKAIAAGCRAQQQRLQHSNTFLRKVVNAKRAREVRIETALDAPQTPPLKYIPTAQPAFVLAQGWAPPPEAPPTDIPFQVPRTGVSAALPVYTTYKNGRTRVMTVVRHVKGDVEEFSEELKKVCNAEVVERRGNSIQVKGNHVKGVQEWLLGLGF 501
M R+A+ G A +R+ + RK + R ++ ++ + PPLKY PT +P V GW+PPP P +PF V RT V LPVY +NGRTRV+T++R GD EE EL KVC + V R ++V G+H + +++WL GLGF
Sbjct: 1 MFPRRAVV-GAGAAVERVASNRQIRRKTRHPANLRALQRLPQVEL-EVPPLKYEPTYEPERVSFNGWSPPPAEPLPGLPFHVKRTAVGLQLPVYRDIRNGRTRVLTILRRYHGDEEELRTELSKVCLGKEVVARPGRLEVVGDHARDIKKWLTGLGF 155
BLAST of jgi.p|Trimin1|62533 vs. uniprot
Match: A0A8K1FRY2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FRY2_PYTOL) HSP 1 Score: 106 bits (265), Expect = 5.310e-26 Identity = 60/157 (38.22%), Postives = 85/157 (54.14%), Query Frame = 1
Query: 31 MLARKAIAAGCRAQQQRLQHSNTFLRKVVNAKRAREVRIETALDAPQTPPLKYIPTAQPAFVLAQGWAPPPEAPPTDIPFQVPRTGVSAALPVYTTYKNGRTRVMTVVRHVKGDVEEFSEELKKVCNAEVVERRGNSIQVKGNHVKGVQEWLLGLGF 501
M R+A+ + ++ HSN +R+ A + + PPLKY PT P V GW+P PE P ++PF V RT V LPVY Y+NGRTRV+T++R GD E E+ K+C + V R ++V G+H V++WL+GLGF
Sbjct: 1 MFPRRAVTSALSLERV---HSNRQIRRRTRHPAALRAQQRNPKPEVEVPPLKYEPTYVPEKVSFNGWSPAPEQPLPNLPFFVKRTAVGLQLPVYRDYRNGRTRVLTILRRFNGDEGELQAEMSKICGGKDVVLRPGRLEVTGDHASEVKKWLVGLGF 154
BLAST of jgi.p|Trimin1|62533 vs. uniprot
Match: A0A6A3EWI4_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3EWI4_9STRA) HSP 1 Score: 103 bits (257), Expect = 8.390e-25 Identity = 51/109 (46.79%), Postives = 70/109 (64.22%), Query Frame = 1
Query: 175 PPLKYIPTAQPAFVLAQGWAPPPEAPPTDIPFQVPRTGVSAALPVYTTYKNGRTRVMTVVRHVKGDVEEFSEELKKVCNAEVVERRGNSIQVKGNHVKGVQEWLLGLGF 501
PPLK+ P+ P V GW+P PEAP +PF V RT V LPVY ++NGRTRV+T++R KGD E +E+ KVC + V R ++V G+H +++WL+GLGF
Sbjct: 46 PPLKFEPSYVPEKVSFNGWSPAPEAPLPGLPFHVKRTAVGMQLPVYRDFRNGRTRVLTILRRYKGDELELRDEMSKVCQGKEVVVRPGRLEVVGDHASDIRKWLVGLGF 154
BLAST of jgi.p|Trimin1|62533 vs. uniprot
Match: K3X7C0_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X7C0_GLOUD) HSP 1 Score: 103 bits (257), Expect = 8.390e-25 Identity = 53/111 (47.75%), Postives = 71/111 (63.96%), Query Frame = 1
Query: 169 QTPPLKYIPTAQPAFVLAQGWAPPPEAPPTDIPFQVPRTGVSAALPVYTTYKNGRTRVMTVVRHVKGDVEEFSEELKKVCNAEVVERRGNSIQVKGNHVKGVQEWLLGLGF 501
+ P LK+ PT P V GW+P PEAP ++PF V RT + LPVY Y+NGRTRV+T++R KGD EE E+ KVC + V R ++V G+HV +++WL GLGF
Sbjct: 44 EVPALKFEPTYVPEKVSFNGWSPAPEAPLPNLPFHVKRTALGLQLPVYRDYRNGRTRVLTILRRFKGDEEELRTEMSKVCLGKEVIVRPGRLEVVGDHVGDLKKWLTGLGF 154
BLAST of jgi.p|Trimin1|62533 vs. uniprot
Match: F0WT29_9STRA (Uncharacterized protein AlNc14C243G9515 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WT29_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 7.580e-23 Identity = 51/111 (45.95%), Postives = 67/111 (60.36%), Query Frame = 1
Query: 169 QTPPLKYIPTAQPAFVLAQGWAPPPEAPPTDIPFQVPRTGVSAALPVYTTYKNGRTRVMTVVRHVKGDVEEFSEELKKVCNAEVVERRGNSIQVKGNHVKGVQEWLLGLGF 501
+ PPLKY PT P V GW+P PE P IPF+V RT LPVY Y+NGRTRV+T++R G E E+ KVC + V R ++V G+H+ +++WL GLGF
Sbjct: 45 EVPPLKYEPTYIPENVSFNGWSPAPENPLPGIPFKVKRTAKGLQLPVYRDYRNGRTRVLTILRRYDGHEGELQSEMSKVCGGKDVIARPGRLEVVGDHLMDLRKWLTGLGF 155 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|62533 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_9286 ID=mRNA_9286|Name=jgi.p|Trimin1|62533|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=568bp|location=Sequence derived from alignment at Contig_38:264110..265834- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GGCTTTTGCGCTTCGCTGTGTTGTGTGCTGATGCTGGCGAGGAAAGCAATback to top protein sequence of jgi.p|Trimin1|62533 >Trimin1|62533|CE62532_147 ID=Trimin1|62533|CE62532_147|Name=jgi.p|Trimin1|62533|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=158bp MLARKAIAAGCRAQQQRLQHSNTFLRKVVNAKRAREVRIETALDAPQTPPback to top mRNA from alignment at Contig_38:264110..265834- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_9286 ID=mRNA_9286|Name=jgi.p|Trimin1|62533|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1725bp|location=Sequence derived from alignment at Contig_38:264110..265834- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_38:264110..265834- >mRNA_9286 ID=mRNA_9286|Name=jgi.p|Trimin1|62533|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=474bp|location=Sequence derived from alignment at Contig_38:264110..265834- (Tribonema minus UTEX_B_3156 )back to top |