Trimin1|349122|estExt_Genemark1.C_Ctg_360119 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|349122
Unique NameTrimin1|349122|estExt_Genemark1.C_Ctg_360119
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length190
Homology
BLAST of jgi.p|Trimin1|349122 vs. uniprot
Match: A0A835Z2K1_9STRA (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2K1_9STRA)

HSP 1 Score: 380 bits (976), Expect = 1.630e-133
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0
Query:    1 MVCSSNVNRSVLGQIVLEKMNMAVSSFGVGTDVKLPGRSRGEPAVFPFGTPYIEMHDILWAADKQLYTRNGVLRLLARDACTKRHPERWQDLPSAAVVAYDVVICFENRIFDICVQDLQDRDALDFKPISLISVPVKDTPQDAEEAMEDVTSLCEMLEACEDLESDVSGIVEAFQETTKRAILHQVCHL 189
            MVCSSNVNRSVLGQIVLEKMNMAVSSFGVGTDVKLPGRSRGEPAVFPFGTPYIEMHDILWAADKQLYTRNGVLRLLARDACTKRHPERWQDLPSAAVVAYDVVICFENRIFDICVQDLQDRDALDFKPISLISVPVKDTPQDAEEAMEDVTSLCEMLEACEDLESDVSGIVEAFQETTKRAILHQVCHL
Sbjct:    1 MVCSSNVNRSVLGQIVLEKMNMAVSSFGVGTDVKLPGRSRGEPAVFPFGTPYIEMHDILWAADKQLYTRNGVLRLLARDACTKRHPERWQDLPSAAVVAYDVVICFENRIFDICVQDLQDRDALDFKPISLISVPVKDTPQDAEEAMEDVTSLCEMLEACEDLESDVSGIVEAFQETTKRAILHQVCHL 189          
BLAST of jgi.p|Trimin1|349122 vs. uniprot
Match: A0A6H5JLZ3_9PHAE (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLZ3_9PHAE)

HSP 1 Score: 182 bits (462), Expect = 1.990e-55
Identity = 83/178 (46.63%), Postives = 124/178 (69.66%), Query Frame = 0
Query:   12 LGQIVLEKMNMAVSSFGVGTDVKLPGRSRGEPAVFPFGTPYIEMHDILWAADKQLYTRNGVLRLLARDACTKRHPERWQDLPSAAVVAYDVVICFENRIFDICVQDLQDRDALDFKPISLISVPVKDTPQDAEEAMEDVTSLCEMLEACEDLESDVSGIVEAFQETTKRAILHQVCHL 189
            + +I+L++ +M   SFG G +V+LPG+    P  FPFGTPY+E+ D L   ++ L+ RN VL LL R+A TKR PERWQ L    V ++DVV+CFE+R+FD+ V+DLQ RD   FKP+ ++S+ ++D+  D+  A  DV  LC+MLE C+DL+S+ + ++  F+  +KR +LHQVCH+
Sbjct:    1 MAEILLKEHDMRAQSFGTGREVRLPGKDSKSPQSFPFGTPYVEIRDFLARQNEALFRRNSVLGLLERNATTKRAPERWQSLDGGHVASFDVVVCFESRVFDLVVEDLQQRDPDTFKPLHVVSMTIRDSANDSAAAAGDVLDLCKMLEDCDDLDSNAAELLNDFRIRSKRTVLHQVCHI 178          
BLAST of jgi.p|Trimin1|349122 vs. uniprot
Match: A0A6H5KZG9_9PHAE (Protein-serine/threonine phosphatase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZG9_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 3.930e-50
Identity = 80/189 (42.33%), Postives = 128/189 (67.72%), Query Frame = 0
Query:    1 MVCSSNVNRSVLGQIVLEKMNMAVSSFGVGTDVKLPGRSRGEPAVFPFGTPYIEMHDILWAADKQLYTRNGVLRLLARDACTKRHPERWQDLPSAAVVAYDVVICFENRIFDICVQDLQDRDALDFKPISLISVPVKDTPQDAEEAMEDVTSLCEMLEACEDLESDVSGIVEAFQETTKRAILHQVCHL 189
            +VCS+N NRS++   +L++ N  V S+G G +V+LPG+    P VFPFGTPY ++ D L A D+ L+++N +L L+AR+A  K  P+R+Q++    +  +DVV+CFE R+F + V+DLQ RD   FKP+ +I++ +KD+ +++  A + V  LC ML+    L+ + +G++E F   TKR +LHQVCH+
Sbjct:  204 VVCSANFNRSMMAHKLLKEHNFQVESYGTGREVRLPGKDIASPEVFPFGTPYRDIFDKLKAKDEALFSQNNLLPLVARNAMVKAAPQRFQEIEGPDMADFDVVLCFETRVFYLVVEDLQSRDPETFKPLHVINMTIKDSFEESAAAADSVLELCRMLDGVSQLDDETAGVLEVFTRKTKRTVLHQVCHV 392          
BLAST of jgi.p|Trimin1|349122 vs. uniprot
Match: A0A836C7Y0_9STRA (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7Y0_9STRA)

HSP 1 Score: 165 bits (418), Expect = 1.930e-48
Identity = 75/125 (60.00%), Postives = 99/125 (79.20%), Query Frame = 0
Query:   65 QLYTRNGVLRLLARDACTKRHPERWQDLPSAAVVAYDVVICFENRIFDICVQDLQDRDALDFKPISLISVPVKDTPQDAEEAMEDVTSLCEMLEACEDLESDVSGIVEAFQETTKRAILHQVCHL 189
            QL+ R  +L+LL+RDACTKRHPERWQDL SA    +D++ICF ++IFD+C++D Q+R   DFKPI ++S+PV DTPQ AE+AM DV  L +ML+AC+DL++  + +VEAFQ TTK  ILHQVCHL
Sbjct:   78 QLHARAALLKLLSRDACTKRHPERWQDLGSADTAKFDIIICFNDKIFDLCIEDFQNRPPFDFKPIHIVSLPVMDTPQHAEQAMVDVLKLVKMLDACDDLDNHGADVVEAFQATTKWPILHQVCHL 202          
BLAST of jgi.p|Trimin1|349122 vs. uniprot
Match: A0A6S8R8X9_9STRA (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8R8X9_9STRA)

HSP 1 Score: 167 bits (422), Expect = 2.330e-48
Identity = 90/196 (45.92%), Postives = 126/196 (64.29%), Query Frame = 0
Query:    1 MVCSSNVNRSVLGQIVLEKMNMAVSSFGVGTDVKLPGRSRGEPAVFPFGTPYIEMHDILWAA--DKQLYTRNGVLRLLARDACTKRHPERWQDLPSAAVVAYDVVICFENRIFDICVQDLQDRDALD-FKPISLISVPVKDTPQDAEEAMEDVTSLCEMLEACEDLESDVSGIVEAFQET----TKRAILHQVCHL 189
            +VCSSN+NRS+ G +VL    + V S+G GT V+LPG+S  EP VF FGTPY EM++ L A   D+  +T NGVL+L  R A  K  P+RWQD+ S  +  +DVVI FE RI+D  V+DLQ R+  + F+PI +I +  KD P +A+        LC +LEA +DL  +  GIVE+FQ+     T+  +L+Q+C+L
Sbjct:   61 VVCSSNINRSMEGHVVLGNAGLRVESYGTGTSVRLPGKSALEPRVFKFGTPYEEMYNSLAATPEDEAFFTHNGVLQLCRRGAAVKTAPQRWQDMSSDFIATHDVVIAFEERIYDAVVEDLQTREPTESFEPIHVICLDTKDNPHEAKLQGRVALELCWLLEAADDLVVEAPGIVESFQDERMTHTQIKVLYQLCYL 256          
BLAST of jgi.p|Trimin1|349122 vs. uniprot
Match: A0A7S2A5S7_TRICV (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A5S7_TRICV)

HSP 1 Score: 166 bits (420), Expect = 3.510e-48
Identity = 92/196 (46.94%), Postives = 122/196 (62.24%), Query Frame = 0
Query:    1 MVCSSNVNRSVLGQIVLEKMNMAVSSFGVGTDVKLPGRSRGEPAVFPFGTPYIEMHDILWAA--DKQLYTRNGVLRLLARDACTKRHPERWQDLPSAAVVAYDVVICFENRIFDICVQDLQDRDAL-DFKPISLISVPVKDTPQDAEEAMEDVTSLCEMLEACEDLESDVSGIVEAFQET----TKRAILHQVCHL 189
            +VCSSN+NRS+   +VL    + V S+G GT V+LPGRS  EP VF FGTPY EMH  L A   D+  +T NGVL+L  R A  KR P+RWQD+PS  V  +DVVI FE RIFD  ++DLQ R+   DF PI ++ +  KD P +A+        LC +LE   DL  ++  I++AFQE     T   +L+Q+C+L
Sbjct:   51 VVCSSNINRSMEAHVVLGNAGLRVESYGTGTTVRLPGRSAMEPRVFKFGTPYEEMHASLAATPDDEAFFTHNGVLQLCRRGAAVKRAPQRWQDVPSREVQKHDVVIAFEERIFDAVIEDLQMREPTEDFLPIHVVCLDTKDNPHEAKLQGRVALELCWLLEGANDLVLEMPEILDAFQEERMTHTPIKVLYQLCYL 246          
BLAST of jgi.p|Trimin1|349122 vs. uniprot
Match: A0A061RLN1_9CHLO (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RLN1_9CHLO)

HSP 1 Score: 163 bits (413), Expect = 9.450e-48
Identity = 83/187 (44.39%), Postives = 118/187 (63.10%), Query Frame = 0
Query:    1 MVCSSNVNRSVLGQIVLEKMNMAVSSFGVGTDVKLPGRSRGEPAVFPFGTPYIEMHDILWAADKQLYTRNGVLRLLARDACTKRHPERWQDLPSAAVVAYDVVICFENRIFDICVQDLQDRDALDFKPISLISVPVKDTPQDAEEAMEDVTSLCEMLEACEDLESDVSGIVEAFQETTKRAILHQVC 187
            MVC+SN NRS+    +L++ N  V S+GVG  VKLPG S  EP V+ FGTPY  +++ L A D +LYTRNG+L++L R+   K  PERWQD        YDVV+CFE R+FD CV DLQ R+    + + ++++ VKD  ++A  A      LC+ML+A ED E ++  I+  F++ T R  L+ +C
Sbjct:   13 MVCASNQNRSMEAHALLKEHNFRVGSYGVGQHVKLPGASAKEPNVYGFGTPYKRIYEELSAKDPELYTRNGLLKMLHRNMGVKTAPERWQDCRDR----YDVVVCFEERVFDACVDDLQKREQSLCRSVLVVNLEVKDNHEEAANAAPHALRLCQMLDASEDWEEEIDAILNVFEKETGRRPLYTIC 195          
BLAST of jgi.p|Trimin1|349122 vs. uniprot
Match: A0A7S1FXY9_9STRA (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FXY9_9STRA)

HSP 1 Score: 162 bits (411), Expect = 7.320e-47
Identity = 87/194 (44.85%), Postives = 121/194 (62.37%), Query Frame = 0
Query:    1 MVCSSNVNRSVLGQIVLEKMNMAVSSFGVGTDVKLPGRSRGEPAVFPFGTPYIEMHDILWAADKQLYTRNGVLRLLARDACTKRHPERWQDLPSAAVVAYDVVICFENRIFDICVQDLQDRDALD-FKPISLISVPVKDTPQDAEEAMEDVTSLCEMLEACEDLESDVSGIVEAFQET----TKRAILHQVCHL 189
            +VCSSN+NRS+ G +VL    + V S+G G+ V+LPGRS  +P +F FGTPY +M++ L   D+  + +NGVL+L  R +  K  P+RWQD PS A+ ++DVVI FE RIFD  V+DLQ RD  D F PI +I +  KD P +A         LC +LE   DL ++   IVE FQ      T+  +L+Q+C+L
Sbjct:   50 VVCSSNINRSMEGHVVLGNAGLKVESYGTGSTVRLPGRSAMDPRIFKFGTPYAQMYESLATEDEAFFFQNGVLQLCRRGSGVKVAPQRWQDTPSTAIASHDVVIAFEERIFDAVVEDLQTRDPTDDFAPIHVICLDTKDNPHEAHIQGRVCLELCWLLENAGDLVAEAPEIVENFQMVHMSHTQIKVLYQLCYL 243          
BLAST of jgi.p|Trimin1|349122 vs. uniprot
Match: A0A7S1GS15_CYCTE (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GS15_CYCTE)

HSP 1 Score: 162 bits (409), Expect = 1.380e-46
Identity = 93/197 (47.21%), Postives = 121/197 (61.42%), Query Frame = 0
Query:    1 MVCSSNVNRSVLGQIVLEKMNMAVSSFGVGTDVKLPGRSRGEPAVFPFGTPYIEMHDILWAA--DKQLYTRNGVLRLLARDACTKRHPERWQDLPSAAVVAYDVVICFENRIFDICVQDLQDRDAL-DFKPISLISVPVKDTPQDAEEAMEDVTSLCEMLE-ACEDLESDVSGIVEAFQET----TKRAILHQVCHL 189
            +VCSSN+NRS+   +VL    + V S+G GT V+LPGRS  EP +F FGTPY EM+  L A   D   + RNGVL+L  R A  K  P+RWQD P  AV  +DVVI FE RIFD  ++DLQ R+   DFKPI +I +  KD P +A+        LC MLE A +DL +    IV+AFQ+     T   +L+Q+C+L
Sbjct:   45 VVCSSNINRSMEAHVVLGNAGLKVESYGTGTQVRLPGRSAMEPRIFKFGTPYEEMYKSLAATQDDAAFFMRNGVLQLCRRGAAVKVAPQRWQDTPPEAVTKHDVVIAFEERIFDAVIEDLQTREPTEDFKPIHVICLDTKDNPHEAQLQGRVALELCWMLESASDDLINQAPTIVDAFQKERMTHTPIQVLYQLCYL 241          
BLAST of jgi.p|Trimin1|349122 vs. uniprot
Match: A0A7S2Y8T2_9STRA (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=4 Tax=Naviculales TaxID=38748 RepID=A0A7S2Y8T2_9STRA)

HSP 1 Score: 160 bits (406), Expect = 2.620e-46
Identity = 87/196 (44.39%), Postives = 119/196 (60.71%), Query Frame = 0
Query:    1 MVCSSNVNRSVLGQIVLEKMNMAVSSFGVGTDVKLPGRSRGEPAVFPFGTPYIEMHDILWAA--DKQLYTRNGVLRLLARDACTKRHPERWQDLPSAAVVAYDVVICFENRIFDICVQDLQDRDAL-DFKPISLISVPVKDTPQDAEEAMEDVTSLCEMLEACEDLESDVSGIVEAFQET----TKRAILHQVCHL 189
            +VCSSN+NRS+   +VL    + V S+G GT V+LPGR+  EP +F FGTPY EMH  +     D   +TRNGVL+L  R A  KR P+RWQD+ S  +  +++VI FE RIFD  ++DLQ R    DF+P+ +I +  KD P +A         LC  LE CEDL+ + + I++ FQ      T   IL+QVC+L
Sbjct:   32 VVCSSNINRSMEAHVVLGNAGLRVESYGTGTQVRLPGRTAMEPRIFKFGTPYEEMHQSMNVTPEDTTYFTRNGVLQLCQRGAAVKRAPQRWQDMASEDISKHNIVIAFEERIFDAVIEDLQLRQPTEDFRPMHVICLDTKDNPHEAARQGIVALRLCWRLEHCEDLDLEAAEIIDEFQRERDSETNIKILYQVCYL 227          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349122 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z2K1_9STRA1.630e-133100.00RNA polymerase II subunit A C-terminal domain phos... [more]
A0A6H5JLZ3_9PHAE1.990e-5546.63RNA polymerase II subunit A C-terminal domain phos... [more]
A0A6H5KZG9_9PHAE3.930e-5042.33Protein-serine/threonine phosphatase n=1 Tax=Ectoc... [more]
A0A836C7Y0_9STRA1.930e-4860.00RNA polymerase II subunit A C-terminal domain phos... [more]
A0A6S8R8X9_9STRA2.330e-4845.92RNA polymerase II subunit A C-terminal domain phos... [more]
A0A7S2A5S7_TRICV3.510e-4846.94RNA polymerase II subunit A C-terminal domain phos... [more]
A0A061RLN1_9CHLO9.450e-4844.39RNA polymerase II subunit A C-terminal domain phos... [more]
A0A7S1FXY9_9STRA7.320e-4744.85RNA polymerase II subunit A C-terminal domain phos... [more]
A0A7S1GS15_CYCTE1.380e-4647.21RNA polymerase II subunit A C-terminal domain phos... [more]
A0A7S2Y8T2_9STRA2.620e-4644.39RNA polymerase II subunit A C-terminal domain phos... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006811RNA polymerase II subunit APFAMPF04722Ssu72coord: 1..188
e-value: 4.5E-53
score: 179.6
IPR006811RNA polymerase II subunit APANTHERPTHR20383RNA POLYMERASE II SUBUNIT A C-TERMINAL DOMAIN PHOSPHATASEcoord: 1..188
NoneNo IPR availableGENE3D3.40.50.2300coord: 58..189
e-value: 3.7E-32
score: 113.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_36contigContig_36:1032418..1037905 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349122mRNA_8442Tribonema minus UTEX_B_3156 mRNAContig_36 1032418..1039708 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|349122|estExt_Genemark1.C_Ctg_360119 ID=Trimin1|349122|estExt_Genemark1.C_Ctg_360119|Name=jgi.p|Trimin1|349122|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=190bp
MVCSSNVNRSVLGQIVLEKMNMAVSSFGVGTDVKLPGRSRGEPAVFPFGT
PYIEMHDILWAADKQLYTRNGVLRLLARDACTKRHPERWQDLPSAAVVAY
DVVICFENRIFDICVQDLQDRDALDFKPISLISVPVKDTPQDAEEAMEDV
TSLCEMLEACEDLESDVSGIVEAFQETTKRAILHQVCHL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006811RNA_pol_II_suA