mRNA_8244 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|164906
Unique NamemRNA_8244
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|164906 vs. uniprot
Match: A0A835YV21_9STRA (CRC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV21_9STRA)

HSP 1 Score: 319 bits (818), Expect = 9.000e-111
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1
Query:    1 MHTYIPSRALQPQASPVGPCKCKKNRCLKLYCGCFQSGDYCSFDCSCLSCQNTVALENLRQDAIRAALERNPAVFQGVAVLTEETSGAIKRTQVTGCNCKNSACLKKYCGCFRAGERCADGCKCTGCKVCMYGNESKDPRTLGDKVFY 444
            MHTYIPSRALQPQASPVGPCKCKKNRCLKLYCGCFQSGDYCSFDCSCLSCQNTVALENLRQDAIRAALERNPAVFQGVAVLTEETSGAIKRTQVTGCNCKNSACLKKYCGCFRAGERCADGCKCTGCKVCMYGNESKDPRTLGDKVFY
Sbjct:    1 MHTYIPSRALQPQASPVGPCKCKKNRCLKLYCGCFQSGDYCSFDCSCLSCQNTVALENLRQDAIRAALERNPAVFQGVAVLTEETSGAIKRTQVTGCNCKNSACLKKYCGCFRAGERCADGCKCTGCKVCMYGNESKDPRTLGDKVFY 148          
BLAST of jgi.p|Trimin1|164906 vs. uniprot
Match: A0A7S3YLM9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YLM9_HETAK)

HSP 1 Score: 120 bits (301), Expect = 1.370e-31
Identity = 60/122 (49.18%), Postives = 71/122 (58.20%), Query Frame = 1
Query:   52 GPCKCKKNRCLKLYCGCFQSGDYCSFDCSCLSCQNTVALENLRQDAIRAALERNPAVFQGVAVLTEETSGAIKRTQVTGCNCKNSACLKKYCGCFRAGERCADGCKCTGCKVCMYGNESKDP 417
            G C CKK++CLKLYC CF +G YC   C+C+ CQN  A E  RQDAI+A LERNP  F              K+   TGCNCK S+CLKKYC CF+AG  C+  CKC  C   + G     P
Sbjct:   44 GVCNCKKSKCLKLYCECFAAGKYCGA-CNCVDCQNAPATEAQRQDAIKAILERNPKAFSSKI----NREALHKQHHSTGCNCKKSSCLKKYCECFQAGVPCSARCKCAACLNGLQGTGPMHP 160          
BLAST of jgi.p|Trimin1|164906 vs. uniprot
Match: A0A0M0JDD9_9EUKA (Tesmin tso1-like cxc domain-containing protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JDD9_9EUKA)

HSP 1 Score: 118 bits (295), Expect = 8.660e-30
Identity = 57/108 (52.78%), Postives = 68/108 (62.96%), Query Frame = 1
Query:   58 CKCKKNRCLKLYCGCFQSGDYCSFDCSCLSCQNTVALENLRQDAIRAALERNPAVFQGVAVLTEETSGAIKRTQVTGCNCKNSACLKKYCGCFRAGERCADGCKCTGC 381
            C C+ +RCLKLYC CF SG YC + C+C SC N    + LR+ AI + LERN   F+     TE+ S A  R    GCNCK S CLKKYC CF+AG +CAD CKC  C
Sbjct:   37 CNCRNSRCLKLYCECFASGQYC-YGCNCQSCFNNPENDELRKQAIESTLERNQQAFRPKISSTEQASSAHNR----GCNCKKSGCLKKYCECFQAGIKCADTCKCVNC 139          
BLAST of jgi.p|Trimin1|164906 vs. uniprot
Match: A0A0K0G0K7_STRVS (Protein lin-54 homolog (inferred by orthology to a human protein) n=2 Tax=Strongyloides TaxID=6247 RepID=A0A0K0G0K7_STRVS)

HSP 1 Score: 120 bits (302), Expect = 1.910e-29
Identity = 61/147 (41.50%), Postives = 87/147 (59.18%), Query Frame = 1
Query:   13 IPSRALQPQASPVG---PCKCKKNRCLKLYCGCFQSGDYCSFDCSCLSCQNTVALENLRQDAIRAALERNPAVFQGVAVLTEETSGA--IKRTQVTGCNCKNSACLKKYCGCFRAGERCADGCKCTGCKVCMYGNESKDPRTLGDKV 438
            + S+ L+  + P+G   PC C K++CLKLYC CF SG+YC  +C+C  C N ++ E+ R  A++++LERNP  F+    ++   SG   I+R    GC+CK S CLK YC C+ A   C D CKC  CK      E+  P TL +K+
Sbjct:  216 VESQKLKGTSKPIGNKKPCNCTKSQCLKLYCECFASGEYCK-NCNCKDCHNNLSYEDERSQAVKSSLERNPNAFKPKIGISTRVSGPKDIERLHQKGCHCKKSGCLKNYCECYEAKVPCTDRCKCVDCK----NLEAIKPPTLKEKL 357          
BLAST of jgi.p|Trimin1|164906 vs. uniprot
Match: A0A6G1CIF4_9ORYZ (CRC domain-containing protein n=2 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1CIF4_9ORYZ)

HSP 1 Score: 119 bits (298), Expect = 1.760e-28
Identity = 59/116 (50.86%), Postives = 72/116 (62.07%), Query Frame = 1
Query:   58 CKCKKNRCLKLYCGCFQSGDYCSFDCSCLSCQNTVALENLRQDAIRAALERNPAVFQ-----GVAVLTEETS--GAIKRTQVTGCNCKNSACLKKYCGCFRAGERCADGCKCTGCK 384
            C CK ++CLKLYC CF  G YC   C+C +C N V+ EN+RQDAI  ALERNPA F        A   E+ +  G +      GCNCK S CLKKYC CF++   C++ CKCTGCK
Sbjct:  175 CSCKYSKCLKLYCECFAKGGYC-IGCNCTNCCNNVSHENVRQDAINVALERNPAAFMPKVWDSTAHNCEDKAAEGLLVDKHTKGCNCKKSECLKKYCECFKSSVFCSENCKCTGCK 289          
BLAST of jgi.p|Trimin1|164906 vs. uniprot
Match: M2VUQ3_GALSU (Transcription factor n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VUQ3_GALSU)

HSP 1 Score: 114 bits (286), Expect = 2.420e-28
Identity = 52/112 (46.43%), Postives = 71/112 (63.39%), Query Frame = 1
Query:   49 VGPCKCKKNRCLKLYCGCFQSGDYCSFDCSCLSCQNTVALENLRQDAIRAALERNPAVFQGVAVLTEETSGAIKRTQVTGCNCKNSACLKKYCGCFRAGERCADGCKCTGCK 384
            V  CKC K++CLK+YC CF SG YC   C C+ C N    +  R+ AI++ LE+NP  FQ       ++ G I +    GCNC+ +ACLKKYC CF++G  C++ CKC+GCK
Sbjct:   12 VKGCKCGKSKCLKMYCDCFNSGVYCGRHCICVGCYNNEQHQVEREAAIKSVLEKNPDAFQPKVATFRDSGGLIVKHN-KGCNCRKTACLKKYCECFQSGVLCSELCKCSGCK 122          
BLAST of jgi.p|Trimin1|164906 vs. uniprot
Match: A0A7S3AJR0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AJR0_9EUKA)

HSP 1 Score: 112 bits (279), Expect = 2.960e-28
Identity = 53/110 (48.18%), Postives = 67/110 (60.91%), Query Frame = 1
Query:   55 PCKCKKNRCLKLYCGCFQSGDYCSFDCSCLSCQNTVALENLRQDAIRAALERNPAVFQGVAVLTEETSGAIKRTQVTGCNCKNSACLKKYCGCFRAGERCADGCKCTGCK 384
            PC CK +RCLKLYC CF SG YC   C+C SC N    ++ R+ AI++ LERNP  F+         +G   R    GC+C+ S+CLKKYC CF+ G +C   CKC GCK
Sbjct:    6 PCNCKNSRCLKLYCECFASGQYC-LACNCQSCHNNPENDDKRKRAIKSTLERNPQAFRPKI----NHAGDTLRRHTRGCHCRKSSCLKKYCECFQGGIKCTAMCKCAGCK 110          
BLAST of jgi.p|Trimin1|164906 vs. uniprot
Match: A0A7S4C148_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C148_CHRCT)

HSP 1 Score: 114 bits (285), Expect = 3.620e-28
Identity = 58/127 (45.67%), Postives = 75/127 (59.06%), Query Frame = 1
Query:   58 CKCKKNRCLKLYCGCFQSGDYCSFDCSCLSCQNTVALENLRQDAIRAALERNPAVFQGVAVLTEETSGAIKRTQVTGCNCKNSACLKKYCGCFRAGERCADGCKCTGCKVCMYGNESKDPRTLGDKV 438
            C C+ +RCLKLYC CF SG YC F C+C  C N    +  R+ AI + LERNP+ F+         +   + T+  GC+CK S CLKKYC CF+AG  C   CKC+ CK  + GNE +   TLG +V
Sbjct:   28 CNCRNSRCLKLYCECFASGQYC-FGCNCQGCHNNPENDEKRKRAIESTLERNPSAFRPKINHNAAETDLGRHTK--GCHCKKSGCLKKYCECFQAGIMCTAACKCSECKN-IAGNEERAALTLGGRV 150          
BLAST of jgi.p|Trimin1|164906 vs. uniprot
Match: A0A7S0RP90_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0RP90_9CHLO)

HSP 1 Score: 114 bits (285), Expect = 3.850e-28
Identity = 58/119 (48.74%), Postives = 67/119 (56.30%), Query Frame = 1
Query:   58 CKCKKNRCLKLYCGCFQSGDYCSFDCSCLSCQNTVALENLRQDAIRAALERNPAVFQGVAVLTEETSGAIKRTQVT----------GCNCKNSACLKKYCGCFRAGERCADGCKCTGCK 384
            C CK +RCLKLYC CF SG YC   C+C +C N    E++R  A+ A LERNP  F+      EE   A  R              GCNCK SACLKKYC CF+AG  C+D CKC  CK
Sbjct:   17 CNCKNSRCLKLYCECFASGRYCD-GCNCSNCYNNRENEHVRMSAVEAILERNPNAFRPKIQAQEEVVAAAPRLAAPPADAGGKHSKGCNCKKSACLKKYCECFQAGVFCSDSCKCVECK 134          
BLAST of jgi.p|Trimin1|164906 vs. uniprot
Match: D7FRF0_ECTSI (Tesmin-like, animal TCX proteins are associated with development of both male and female reproductiv n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRF0_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 5.520e-28
Identity = 57/109 (52.29%), Postives = 70/109 (64.22%), Query Frame = 1
Query:   58 CKCKKNRCLKLYCGCFQSGDYCSFDCSCLSCQNTVALENLRQDAIRAALERNPAVFQGVAVLTEETSGAIKRTQVTGCNCKNSACLKKYCGCFRAGERCADGCKCTGCK 384
            C CKK++CLKLYC CFQ   YC+  C+C+ C NT   E+LRQ AI+  +ERNP  F     +++    A KR+   GCNCK SACLKKYC CF+AG  C   CKC  CK
Sbjct:  440 CNCKKSKCLKLYCECFQRQQYCN-GCNCVECLNTERTEDLRQLAIQGTIERNPQAF-----VSKFERRAGKRSHNAGCNCKKSACLKKYCECFQAGVACGTNCKCVNCK 542          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|164906 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YV21_9STRA9.000e-111100.00CRC domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S3YLM9_HETAK1.370e-3149.18Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A0M0JDD9_9EUKA8.660e-3052.78Tesmin tso1-like cxc domain-containing protein n=1... [more]
A0A0K0G0K7_STRVS1.910e-2941.50Protein lin-54 homolog (inferred by orthology to a... [more]
A0A6G1CIF4_9ORYZ1.760e-2850.86CRC domain-containing protein n=2 Tax=Oryza meyeri... [more]
M2VUQ3_GALSU2.420e-2846.43Transcription factor n=1 Tax=Galdieria sulphuraria... [more]
A0A7S3AJR0_9EUKA2.960e-2848.18Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A7S4C148_CHRCT3.620e-2845.67Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S0RP90_9CHLO3.850e-2848.74Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
D7FRF0_ECTSI5.520e-2852.29Tesmin-like, animal TCX proteins are associated wi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_34contigContig_34:113266..114741 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|164906|e_gw1.34.136.1
BRITEko00000,ko00001,ko01000,ko03009
KEGG Pathwayko03008,ko04218,map03008,map04218
KEGG koko:K14570,ko:K21776
DescriptionDNA-binding transcription factor activity
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG1171@1|root,KOG1171@2759|Eukaryota
Evalue9.25e-30
Seed ortholog3712.Bo2g158480.1
Hectar predicted targeting categoryother localisation
TranscriptId165228
TrackFilteredModels1
ProteinId164906
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|164906gene_8244Tribonema minus UTEX_B_3156 geneContig_34 113266..114741 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8244_1exon_8244_1Tribonema minus UTEX_B_3156 exonContig_34 113266..113549 +
exon_8244_2exon_8244_2Tribonema minus UTEX_B_3156 exonContig_34 114579..114741 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8244CDS_8244Tribonema minus UTEX_B_3156 CDSContig_34 113266..113549 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|164906Trimin1|164906|e_gw1.34.136.1Tribonema minus UTEX_B_3156 polypeptideContig_34 113266..114741 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8244 ID=mRNA_8244|Name=jgi.p|Trimin1|164906|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=447bp|location=Sequence derived from alignment at Contig_34:113266..114741+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCATACATACATACCTTCACGCGCGCTGCAGCCGCAGGCGTCGCCAGT
CGGTCCGTGCAAGTGCAAGAAGAATCGCTGCCTGAAGCTGTACTGCGGCT
GCTTCCAATCCGGGGACTACTGCTCGTTCGACTGCAGCTGCCTCTCGTGC
CAGAACACGGTAGCTTTGGAGAATTTGCGCCAGGATGCGATTCGCGCCGC
ACTAGAGAGGAACCCTGCTGTGTTTCAGGGAGTGGCTGTGCTGACAGAGG
AGACTAGCGGGGCCATCAAACGCACACAGGTGACCGGATGCAACTGCAAG
AATAGCGCGTGCCTGAAGAAGTACTGCGGCTGCTTCCGCGCTGGGGAGCG
CTGCGCGGACGGCTGCAAGTGCACAGGGTGCAAGGTATGTATGTATGGCA
ACGAATCAAAAGATCCTAGAACTCTAGGTGACAAGGTGTTTTACTAG
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protein sequence of jgi.p|Trimin1|164906

>Trimin1|164906|e_gw1.34.136.1 ID=Trimin1|164906|e_gw1.34.136.1|Name=jgi.p|Trimin1|164906|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=149bp
MHTYIPSRALQPQASPVGPCKCKKNRCLKLYCGCFQSGDYCSFDCSCLSC
QNTVALENLRQDAIRAALERNPAVFQGVAVLTEETSGAIKRTQVTGCNCK
NSACLKKYCGCFRAGERCADGCKCTGCKVCMYGNESKDPRTLGDKVFY*
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mRNA from alignment at Contig_34:113266..114741+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8244 ID=mRNA_8244|Name=jgi.p|Trimin1|164906|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1476bp|location=Sequence derived from alignment at Contig_34:113266..114741+ (Tribonema minus UTEX_B_3156 )
ATGCATACATACATACCTTCACGCGCGCTGCAGCCGCAGGCGTCGCCAGT CGGTCCGTGCAAGTGCAAGAAGAATCGCTGCCTGAAGCTGTACTGCGGCT GCTTCCAATCCGGGGACTACTGCTCGTTCGACTGCAGCTGCCTCTCGTGC CAGAACACGGTAGCTTTGGAGAATTTGCGCCAGGATGCGATTCGCGCCGC ACTAGAGAGGAACCCTGCTGTGTTTCAGGGAGTGGCTGTGCTGACAGAGG AGACTAGCGGGGCCATCAAACGCACACAGGTGACGTGCGCATGTATGTAT GTATTGGTCCATGTGCGTGTATACCAGCATAGTGGTGGCCCGTTTTGCAT GTATCCATCCACATTGCATGTTTTGGGGTATGGGTCAGTGGACCAAGTGG CTTATTGCGCTGAGTCATGAGTGACTGGGTCATTGATTCATTGAGTGACT CATTGAGGTCCGGTTCAGAAGGGCTGCATTAACGCTTGCTGCAGTTGCTC CGCGCGTAGTGGTGGGTGGGTCGGCACAGGTGAGCATTTGTATTGCACGT GTACTGCATTTGTGCTGTACATGTACTCCATTTGTACTGCATGCGTACCC ATGTACGTGATTGCGGCGTACCCATGTACGTGATTGCGGCCTTTACAAGG TGTGGAAGCTGTAATCCACTTGCTGCAGCTGCCATAGCGCTGGAGTGTGT TCCTTTTGGACGCGGTGGAGCTGCACAGACCATTCATTTTTACATCGAGC CTGCATAATGCGCATGTGTGTATGCGCAATGCGCATGTACGCATGTTCAT TGTGGGCAATGTGTACATTCATGGTTGGGTTGCACATGCTCAGCGCTAAT GTGCGCTTGCACATGGTCCAACAGGTGCACAGAGAGCACGTGTGTGCAAC TGTAACTGCCACTACATGAGCGGAAAGCACAAAGTGGGCAGGCCAAGTCA GCTACATGGCGTCTATAGCAGCAGAGATACATGTATCGCGCTGACACGCA TATGGAATCGTAAGCGCAAGGTGAAGGGACGGCATTTGATTTGAAGCATG GAGGTGATGGCTCATATCAGGTTAACTTGGGGCCATTGACTTAGTGGGGA ACCCAGCACTGCAAGTGCTGAGCACTGTCCGAATGCGAAACTTCATTCAT CTTCAGCAACTTCAACAATGACGCGATGCTCGTGCTGAACCTGAACGCCA CACCGAACAGCAAGTATAGCCACTTCCAAGTGCTTGGAGTAGCTGGTGCA GCTGCTAACCCTATCCCTAACCCTTATCCCGTCCGCTGTCGTCGCTTCTC AGACATCCAGGAGCGGATGCAACTGCAAGAATAGCGCGTGCCTGAAGAAG TACTGCGGCTGCTTCCGCGCTGGGGAGCGCTGCGCGGACGGCTGCAAGTG CACAGGGTGCAAGGTATGTATGTATGGCAACGAATCAAAAGATCCTAGAA CTCTAGGTGACAAGGTGTTTTACTAG
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Coding sequence (CDS) from alignment at Contig_34:113266..114741+

>mRNA_8244 ID=mRNA_8244|Name=jgi.p|Trimin1|164906|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=447bp|location=Sequence derived from alignment at Contig_34:113266..114741+ (Tribonema minus UTEX_B_3156 )
ATGCATACATACATACCTTCACGCGCGCTGCAGCCGCAGGCGTCGCCAGT
CGGTCCGTGCAAGTGCAAGAAGAATCGCTGCCTGAAGCTGTACTGCGGCT
GCTTCCAATCCGGGGACTACTGCTCGTTCGACTGCAGCTGCCTCTCGTGC
CAGAACACGGTAGCTTTGGAGAATTTGCGCCAGGATGCGATTCGCGCCGC
ACTAGAGAGGAACCCTGCTGTGTTTCAGGGAGTGGCTGTGCTGACAGAGG
AGACTAGCGGGGCCATCAAACGCACACAGGTGACCGGATGCAACTGCAAG
AATAGCGCGTGCCTGAAGAAGTACTGCGGCTGCTTCCGCGCTGGGGAGCG
CTGCGCGGACGGCTGCAAGTGCACAGGGTGCAAGGTATGTATGTATGGCA
ACGAATCAAAAGATCCTAGAACTCTAGGTGACAAGGTGTTTTACTAG
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