mRNA_8244 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|164906 vs. uniprot
Match: A0A835YV21_9STRA (CRC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV21_9STRA) HSP 1 Score: 319 bits (818), Expect = 9.000e-111 Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1
Query: 1 MHTYIPSRALQPQASPVGPCKCKKNRCLKLYCGCFQSGDYCSFDCSCLSCQNTVALENLRQDAIRAALERNPAVFQGVAVLTEETSGAIKRTQVTGCNCKNSACLKKYCGCFRAGERCADGCKCTGCKVCMYGNESKDPRTLGDKVFY 444
MHTYIPSRALQPQASPVGPCKCKKNRCLKLYCGCFQSGDYCSFDCSCLSCQNTVALENLRQDAIRAALERNPAVFQGVAVLTEETSGAIKRTQVTGCNCKNSACLKKYCGCFRAGERCADGCKCTGCKVCMYGNESKDPRTLGDKVFY
Sbjct: 1 MHTYIPSRALQPQASPVGPCKCKKNRCLKLYCGCFQSGDYCSFDCSCLSCQNTVALENLRQDAIRAALERNPAVFQGVAVLTEETSGAIKRTQVTGCNCKNSACLKKYCGCFRAGERCADGCKCTGCKVCMYGNESKDPRTLGDKVFY 148
BLAST of jgi.p|Trimin1|164906 vs. uniprot
Match: A0A7S3YLM9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YLM9_HETAK) HSP 1 Score: 120 bits (301), Expect = 1.370e-31 Identity = 60/122 (49.18%), Postives = 71/122 (58.20%), Query Frame = 1
Query: 52 GPCKCKKNRCLKLYCGCFQSGDYCSFDCSCLSCQNTVALENLRQDAIRAALERNPAVFQGVAVLTEETSGAIKRTQVTGCNCKNSACLKKYCGCFRAGERCADGCKCTGCKVCMYGNESKDP 417
G C CKK++CLKLYC CF +G YC C+C+ CQN A E RQDAI+A LERNP F K+ TGCNCK S+CLKKYC CF+AG C+ CKC C + G P
Sbjct: 44 GVCNCKKSKCLKLYCECFAAGKYCGA-CNCVDCQNAPATEAQRQDAIKAILERNPKAFSSKI----NREALHKQHHSTGCNCKKSSCLKKYCECFQAGVPCSARCKCAACLNGLQGTGPMHP 160
BLAST of jgi.p|Trimin1|164906 vs. uniprot
Match: A0A0M0JDD9_9EUKA (Tesmin tso1-like cxc domain-containing protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JDD9_9EUKA) HSP 1 Score: 118 bits (295), Expect = 8.660e-30 Identity = 57/108 (52.78%), Postives = 68/108 (62.96%), Query Frame = 1
Query: 58 CKCKKNRCLKLYCGCFQSGDYCSFDCSCLSCQNTVALENLRQDAIRAALERNPAVFQGVAVLTEETSGAIKRTQVTGCNCKNSACLKKYCGCFRAGERCADGCKCTGC 381
C C+ +RCLKLYC CF SG YC + C+C SC N + LR+ AI + LERN F+ TE+ S A R GCNCK S CLKKYC CF+AG +CAD CKC C
Sbjct: 37 CNCRNSRCLKLYCECFASGQYC-YGCNCQSCFNNPENDELRKQAIESTLERNQQAFRPKISSTEQASSAHNR----GCNCKKSGCLKKYCECFQAGIKCADTCKCVNC 139
BLAST of jgi.p|Trimin1|164906 vs. uniprot
Match: A0A0K0G0K7_STRVS (Protein lin-54 homolog (inferred by orthology to a human protein) n=2 Tax=Strongyloides TaxID=6247 RepID=A0A0K0G0K7_STRVS) HSP 1 Score: 120 bits (302), Expect = 1.910e-29 Identity = 61/147 (41.50%), Postives = 87/147 (59.18%), Query Frame = 1
Query: 13 IPSRALQPQASPVG---PCKCKKNRCLKLYCGCFQSGDYCSFDCSCLSCQNTVALENLRQDAIRAALERNPAVFQGVAVLTEETSGA--IKRTQVTGCNCKNSACLKKYCGCFRAGERCADGCKCTGCKVCMYGNESKDPRTLGDKV 438
+ S+ L+ + P+G PC C K++CLKLYC CF SG+YC +C+C C N ++ E+ R A++++LERNP F+ ++ SG I+R GC+CK S CLK YC C+ A C D CKC CK E+ P TL +K+
Sbjct: 216 VESQKLKGTSKPIGNKKPCNCTKSQCLKLYCECFASGEYCK-NCNCKDCHNNLSYEDERSQAVKSSLERNPNAFKPKIGISTRVSGPKDIERLHQKGCHCKKSGCLKNYCECYEAKVPCTDRCKCVDCK----NLEAIKPPTLKEKL 357
BLAST of jgi.p|Trimin1|164906 vs. uniprot
Match: A0A6G1CIF4_9ORYZ (CRC domain-containing protein n=2 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1CIF4_9ORYZ) HSP 1 Score: 119 bits (298), Expect = 1.760e-28 Identity = 59/116 (50.86%), Postives = 72/116 (62.07%), Query Frame = 1
Query: 58 CKCKKNRCLKLYCGCFQSGDYCSFDCSCLSCQNTVALENLRQDAIRAALERNPAVFQ-----GVAVLTEETS--GAIKRTQVTGCNCKNSACLKKYCGCFRAGERCADGCKCTGCK 384
C CK ++CLKLYC CF G YC C+C +C N V+ EN+RQDAI ALERNPA F A E+ + G + GCNCK S CLKKYC CF++ C++ CKCTGCK
Sbjct: 175 CSCKYSKCLKLYCECFAKGGYC-IGCNCTNCCNNVSHENVRQDAINVALERNPAAFMPKVWDSTAHNCEDKAAEGLLVDKHTKGCNCKKSECLKKYCECFKSSVFCSENCKCTGCK 289
BLAST of jgi.p|Trimin1|164906 vs. uniprot
Match: M2VUQ3_GALSU (Transcription factor n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VUQ3_GALSU) HSP 1 Score: 114 bits (286), Expect = 2.420e-28 Identity = 52/112 (46.43%), Postives = 71/112 (63.39%), Query Frame = 1
Query: 49 VGPCKCKKNRCLKLYCGCFQSGDYCSFDCSCLSCQNTVALENLRQDAIRAALERNPAVFQGVAVLTEETSGAIKRTQVTGCNCKNSACLKKYCGCFRAGERCADGCKCTGCK 384
V CKC K++CLK+YC CF SG YC C C+ C N + R+ AI++ LE+NP FQ ++ G I + GCNC+ +ACLKKYC CF++G C++ CKC+GCK
Sbjct: 12 VKGCKCGKSKCLKMYCDCFNSGVYCGRHCICVGCYNNEQHQVEREAAIKSVLEKNPDAFQPKVATFRDSGGLIVKHN-KGCNCRKTACLKKYCECFQSGVLCSELCKCSGCK 122
BLAST of jgi.p|Trimin1|164906 vs. uniprot
Match: A0A7S3AJR0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AJR0_9EUKA) HSP 1 Score: 112 bits (279), Expect = 2.960e-28 Identity = 53/110 (48.18%), Postives = 67/110 (60.91%), Query Frame = 1
Query: 55 PCKCKKNRCLKLYCGCFQSGDYCSFDCSCLSCQNTVALENLRQDAIRAALERNPAVFQGVAVLTEETSGAIKRTQVTGCNCKNSACLKKYCGCFRAGERCADGCKCTGCK 384
PC CK +RCLKLYC CF SG YC C+C SC N ++ R+ AI++ LERNP F+ +G R GC+C+ S+CLKKYC CF+ G +C CKC GCK
Sbjct: 6 PCNCKNSRCLKLYCECFASGQYC-LACNCQSCHNNPENDDKRKRAIKSTLERNPQAFRPKI----NHAGDTLRRHTRGCHCRKSSCLKKYCECFQGGIKCTAMCKCAGCK 110
BLAST of jgi.p|Trimin1|164906 vs. uniprot
Match: A0A7S4C148_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C148_CHRCT) HSP 1 Score: 114 bits (285), Expect = 3.620e-28 Identity = 58/127 (45.67%), Postives = 75/127 (59.06%), Query Frame = 1
Query: 58 CKCKKNRCLKLYCGCFQSGDYCSFDCSCLSCQNTVALENLRQDAIRAALERNPAVFQGVAVLTEETSGAIKRTQVTGCNCKNSACLKKYCGCFRAGERCADGCKCTGCKVCMYGNESKDPRTLGDKV 438
C C+ +RCLKLYC CF SG YC F C+C C N + R+ AI + LERNP+ F+ + + T+ GC+CK S CLKKYC CF+AG C CKC+ CK + GNE + TLG +V
Sbjct: 28 CNCRNSRCLKLYCECFASGQYC-FGCNCQGCHNNPENDEKRKRAIESTLERNPSAFRPKINHNAAETDLGRHTK--GCHCKKSGCLKKYCECFQAGIMCTAACKCSECKN-IAGNEERAALTLGGRV 150
BLAST of jgi.p|Trimin1|164906 vs. uniprot
Match: A0A7S0RP90_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0RP90_9CHLO) HSP 1 Score: 114 bits (285), Expect = 3.850e-28 Identity = 58/119 (48.74%), Postives = 67/119 (56.30%), Query Frame = 1
Query: 58 CKCKKNRCLKLYCGCFQSGDYCSFDCSCLSCQNTVALENLRQDAIRAALERNPAVFQGVAVLTEETSGAIKRTQVT----------GCNCKNSACLKKYCGCFRAGERCADGCKCTGCK 384
C CK +RCLKLYC CF SG YC C+C +C N E++R A+ A LERNP F+ EE A R GCNCK SACLKKYC CF+AG C+D CKC CK
Sbjct: 17 CNCKNSRCLKLYCECFASGRYCD-GCNCSNCYNNRENEHVRMSAVEAILERNPNAFRPKIQAQEEVVAAAPRLAAPPADAGGKHSKGCNCKKSACLKKYCECFQAGVFCSDSCKCVECK 134
BLAST of jgi.p|Trimin1|164906 vs. uniprot
Match: D7FRF0_ECTSI (Tesmin-like, animal TCX proteins are associated with development of both male and female reproductiv n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRF0_ECTSI) HSP 1 Score: 118 bits (295), Expect = 5.520e-28 Identity = 57/109 (52.29%), Postives = 70/109 (64.22%), Query Frame = 1
Query: 58 CKCKKNRCLKLYCGCFQSGDYCSFDCSCLSCQNTVALENLRQDAIRAALERNPAVFQGVAVLTEETSGAIKRTQVTGCNCKNSACLKKYCGCFRAGERCADGCKCTGCK 384
C CKK++CLKLYC CFQ YC+ C+C+ C NT E+LRQ AI+ +ERNP F +++ A KR+ GCNCK SACLKKYC CF+AG C CKC CK
Sbjct: 440 CNCKKSKCLKLYCECFQRQQYCN-GCNCVECLNTERTEDLRQLAIQGTIERNPQAF-----VSKFERRAGKRSHNAGCNCKKSACLKKYCECFQAGVACGTNCKCVNCK 542 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|164906 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_8244 ID=mRNA_8244|Name=jgi.p|Trimin1|164906|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=447bp|location=Sequence derived from alignment at Contig_34:113266..114741+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCATACATACATACCTTCACGCGCGCTGCAGCCGCAGGCGTCGCCAGTback to top protein sequence of jgi.p|Trimin1|164906 >Trimin1|164906|e_gw1.34.136.1 ID=Trimin1|164906|e_gw1.34.136.1|Name=jgi.p|Trimin1|164906|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=149bp MHTYIPSRALQPQASPVGPCKCKKNRCLKLYCGCFQSGDYCSFDCSCLSCback to top mRNA from alignment at Contig_34:113266..114741+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_8244 ID=mRNA_8244|Name=jgi.p|Trimin1|164906|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1476bp|location=Sequence derived from alignment at Contig_34:113266..114741+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_34:113266..114741+ >mRNA_8244 ID=mRNA_8244|Name=jgi.p|Trimin1|164906|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=447bp|location=Sequence derived from alignment at Contig_34:113266..114741+ (Tribonema minus UTEX_B_3156 )back to top |