mRNA_6015 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|348981
Unique Name	mRNA_6015
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|348981 vs. uniprot
Match: A0A836CFV0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFV0_9STRA)

HSP 1 Score: 779 bits (2011), Expect = 1.870e-277
Identity = 598/598 (100.00%), Postives = 598/598 (100.00%), Query Frame = 1

Query:    1 MADNKFSIKHHQEGKRHQELVVQSERDKREGKAKTEHDEKMLKKELRAIEAAAAAAQAADMEFFGKPPGAKEGEEGPNPELADEGLYQVGGSWYFDGKRHEDKLVKHAHCQLYIEGGIPGAPRRRAVKPEAVKREAAEAEPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRVKEEAREAAEHDYEGAIPXXXXXLLEATDVKXXXXXLPELEVAHGGDVXXXXXXXXLETASDEMIDVKXXXXXXXXXXXXXXXXXXXLXXXXPPLLPGMQEAVGGEDGLAPXXXXPVGDEVDVXXXXXXXXXXXXXXXPPLVDAGDAAEPEETDDGGVEEWIDALILEVALVAVPNTDIRLRRHKVAYFAPGAEHETVVEDIPSDRLRIPAGEDAEWTAPDDAQLINVIIESDELKRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPPXXXXXXXDENTGIGRWQTVKVTTFSQEELDARQAKAEVAKSAKQKRRAXXXXRAERDMELDLAMEADDAMGSYDPLGTGRYKGFDLERGGHDAEEVSAEQKAAIAAALEAEKGAAAPVAFKXXXXXXXXXXXXXRTDDE 1794
            MADNKFSIKHHQEGKRHQELVVQSERDKREGKAKTEHDEKMLKKELRAIEAAAAAAQAADMEFFGKPPGAKEGEEGPNPELADEGLYQVGGSWYFDGKRHEDKLVKHAHCQLYIEGGIPGAPRRRAVKPEAVKREAAEAEPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRVKEEAREAAEHDYEGAIPXXXXXLLEATDVKXXXXXLPELEVAHGGDVXXXXXXXXLETASDEMIDVKXXXXXXXXXXXXXXXXXXXLXXXXPPLLPGMQEAVGGEDGLAPXXXXPVGDEVDVXXXXXXXXXXXXXXXPPLVDAGDAAEPEETDDGGVEEWIDALILEVALVAVPNTDIRLRRHKVAYFAPGAEHETVVEDIPSDRLRIPAGEDAEWTAPDDAQLINVIIESDELKRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPPXXXXXXXDENTGIGRWQTVKVTTFSQEELDARQAKAEVAKSAKQKRRAXXXXRAERDMELDLAMEADDAMGSYDPLGTGRYKGFDLERGGHDAEEVSAEQKAAIAAALEAEKGAAAPVAFKXXXXXXXXXXXXXRTDDE
Sbjct:    1 MADNKFSIKHHQEGKRHQELVVQSERDKREGKAKTEHDEKMLKKELRAIEAAAAAAQAADMEFFGKPPGAKEGEEGPNPELADEGLYQVGGSWYFDGKRHEDKLVKHAHCQLYIEGGIPGAPRRRAVKPEAVKREAAEAEPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRVKEEAREAAEHDYEGAIPXXXXXLLEATDVKXXXXXLPELEVAHGGDVXXXXXXXXLETASDEMIDVKXXXXXXXXXXXXXXXXXXXLXXXXPPLLPGMQEAVGGEDGLAPXXXXPVGDEVDVXXXXXXXXXXXXXXXPPLVDAGDAAEPEETDDGGVEEWIDALILEVALVAVPNTDIRLRRHKVAYFAPGAEHETVVEDIPSDRLRIPAGEDAEWTAPDDAQLINVIIESDELKRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPPXXXXXXXDENTGIGRWQTVKVTTFSQEELDARQAKAEVAKSAKQKRRAXXXXRAERDMELDLAMEADDAMGSYDPLGTGRYKGFDLERGGHDAEEVSAEQKAAIAAALEAEKGAAAPVAFKXXXXXXXXXXXXXRTDDE 598

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BLAST of jgi.p|Trimin1|348981 vs. uniprot
Match: A0A6H5JFI0_9PHAE (Matrin-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFI0_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 6.650e-10
Identity = 75/222 (33.78%), Postives = 94/222 (42.34%), Query Frame = 1

Query: 1009 WIDALILEVALVAVPNTDIRL------------RRHKVAYFAPGAEHETVVEDIPSDRLRIPAGEDAEWTAPDDAQLINVIIESDELKRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPPXXXXXXXDENTGIGRWQTVKVTTFS-QEELDARQAKAEVAKSAKQKRRAXXXXRAERDMELDLAMEADDAMGSYDPLGTGRYKGFDL 1635
            W+DA++L +A    P  D               RR  +AYF  GAE ETV+  + +  +R+PAGE   W AP +                                                           PPXXXX   DENTG+G WQTV V       E +AR+ K EV    K     XXXX   R+  L  AM+ADDAMGSYDP GTG+YKGF++
Sbjct:  238 WVDAVVLALADSEQPPHDATAAGDASAGIMATTRRLDLAYFEAGAEKETVLRGVEAAAVRLPAGEGGAWPAPREM----------------------------------------------------------PPXXXX---DENTGLGGWQTVSVRMVDVAAEAEARRVKKEV----KXXXXXXXXXXXXREKMLVEAMDADDAMGSYDPWGTGKYKGFEI 394

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BLAST of jgi.p|Trimin1|348981 vs. uniprot
Match: K3WLJ6_GLOUD (Matrin-type domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WLJ6_GLOUD)

HSP 1 Score: 61.2 bits (147), Expect = 2.440e-6
Identity = 45/148 (30.41%), Postives = 68/148 (45.95%), Query Frame = 1

Query:    1 MADNKFSIKHHQEGKRHQELVVQSERDKREGKAKTEHDEKMLKKELRAIEAAAAAAQAADMEFFGKPPGAKEGEEGPNPELA---------------------------------DEGLYQVGGSWYFDGKRHEDKLVKHAHCQLYIE 345
            M  +K +IKHH++GK+H+ELV ++ + KR+ K++  H E+ L+ +LR IE AA A  A DM   G  P                                               D G+Y + G  + +GKRHEDKL   + CQ+++E
Sbjct:   14 MQGDKTAIKHHEQGKKHKELVEETLKQKRKAKSEAYHSERDLQDQLREIEEAAQAKYAQDMARSGVLPXXXXXXXXXXXXXXXXXXXARXXXXXXXXXXXXXXXXXXXXXXXKEDDHGIYAIRGEVFLEGKRHEDKLETGSACQIWVE 161

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|348981 vs. uniprot

BLAST of jgi.p|Trimin1|348981 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
A0A836CFV0_9STRA	1.870e-277	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A6H5JFI0_9PHAE	6.650e-10	33.78	Matrin-type domain-containing protein n=2 Tax=Ecto...	[more]
K3WLJ6_GLOUD	2.440e-6	30.41	Matrin-type domain-containing protein n=1 Tax=Glob...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_33	contig	Contig_33:977801..985645 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|348981\|estExt_Genemark1.C_Ctg_330128
BRITE	ko00000,ko03041
KEGG ko	ko:K13220
Description	U1 zinc finger
COG category	A
Max annot lvl	4776\|Peronosporales
EggNOG OGs	KOG0150@1\|root,KOG0150@2759\|Eukaryota,3QBZQ@4776\|Peronosporales
Evalue	3.75e-08
Seed ortholog	4787.PITG_01944T0
Hectar predicted targeting category	other localisation
Ec32 ortholog description	Zinc finger, U1-type
Ec32 ortholog	Ec-10_003350.1
TranscriptId	349303
Track	FilteredModels1
ProteinId	348981

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|348981	gene_6015	Tribonema minus UTEX_B_3156	gene	Contig_33 977801..985645 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|348981	Trimin1\|348981\|estExt_Genemark1.C_Ctg_330128	Tribonema minus UTEX_B_3156	polypeptide	Contig_33 977801..985610 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_6015_1	exon_6015_1	Tribonema minus UTEX_B_3156	exon	Contig_33 977801..977911 +
exon_6015_2	exon_6015_2	Tribonema minus UTEX_B_3156	exon	Contig_33 978414..978513 +
exon_6015_3	exon_6015_3	Tribonema minus UTEX_B_3156	exon	Contig_33 978585..978637 +
exon_6015_4	exon_6015_4	Tribonema minus UTEX_B_3156	exon	Contig_33 979147..979429 +
exon_6015_5	exon_6015_5	Tribonema minus UTEX_B_3156	exon	Contig_33 980606..981066 +
exon_6015_6	exon_6015_6	Tribonema minus UTEX_B_3156	exon	Contig_33 982444..982537 +
exon_6015_7	exon_6015_7	Tribonema minus UTEX_B_3156	exon	Contig_33 982944..983078 +
exon_6015_8	exon_6015_8	Tribonema minus UTEX_B_3156	exon	Contig_33 983214..983407 +
exon_6015_9	exon_6015_9	Tribonema minus UTEX_B_3156	exon	Contig_33 984131..984196 +
exon_6015_10	exon_6015_10	Tribonema minus UTEX_B_3156	exon	Contig_33 984710..984893 +
exon_6015_11	exon_6015_11	Tribonema minus UTEX_B_3156	exon	Contig_33 985495..985645 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_6015	CDS_6015	Tribonema minus UTEX_B_3156	CDS	Contig_33 977801..977911 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_6015	UTR3_6015	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_33 985611..985645 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_33:977801..985645+
coding sequence from alignment at Contig_33:977801..985645+

spliced messenger RNA

>mRNA_6015 ID=mRNA_6015|Name=jgi.p|Trimin1|348981|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1832bp|location=Sequence derived from alignment at Contig_33:977801..985645+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGACAACAAGTTCTCCATCAAGCACCACCAGGAGGGCAAGCGGCA
TCAGGAGCTGGTGGTGCAGAGCGAGAGGGACAAGAGGGAGGGCAAGGCCA
AGACGGAGCATGACGAGAAAATGCTCAAGAAGGAGCTGCGCGCCATTGAG
GCGGCAGCAGCAGCGGCTCAGGCAGCGGACATGGAATTCTTTGGCAAACC
CCCAGGCGCGAAGGAGGGGGAGGAGGGGCCCAATCCGGAACTGGCAGATG
AAGGCCTCTATCAGGTCGGCGGCAGCTGGTACTTTGACGGCAAGCGCCAC
GAGGACAAGCTCGTCAAGCACGCGCACTGCCAGCTCTACATAGAGGGCGG
CATTCCGGGCGCGCCGCGGCGGCGCGCTGTCAAGCCGGAGGCCGTCAAGC
GCGAGGCTGCGGAAGCGGAGCCAGCGGCGGCGGCAGCAGCGGCGGCAGCA
GCGTCAGCGCCAGCGCCAGCGCCAGCGGCGGCGGCAGCGGCGGCAGCGGC
GGGCGCAAGCGCGGCGCCTGCGGTGCGCGTGAAGGAAGAGGCGCGAGAAG
CCGCCGAACACGACTACGAGGGGGCCATCCCGCCCCCACCCCCCCCCCTG
CTTGAAGCAACGGACGTGAAGCCCCCGCCGCCGCCGCTGCCTGAACTTGA
AGTTGCACATGGGGGTGACGTTCCACCACCGCCTCCCCCACCGCCACTGG
AAACCGCGTCAGACGAGATGATCGATGTGAAACCCCCGCCGCCGCCCCCA
CTGGAGCCAACGCCTGACGCAATGGTGGATGTAGAGCCTTTGCCGCCACC
GCCGCCGCCACTGCTGCCGGGTATGCAAGAAGCAGTTGGAGGGGAGGACG
GTCTTGCACCGCCGCCGCCGCCGCCTGTGGGTGATGAAGTTGACGTGCCG
CCGCCGCCATTGGAGGATGGTGTTGAAGTTCCGCCCCCTCCGCCCCCCTT
GGTGGATGCAGGGGATGCGGCTGAGCCCGAGGAAACTGACGATGGCGGTG
TGGAGGAGTGGATCGACGCTCTCATCCTGGAGGTGGCACTGGTGGCAGTG
CCCAACACGGACATCCGGCTGCGACGACACAAGGTTGCCTACTTTGCACC
AGGTGCGGAGCACGAAACGGTTGTCGAAGACATCCCCAGCGACAGGCTGC
GCATCCCTGCGGGCGAGGACGCAGAGTGGACGGCGCCCGATGATGCTCAG
CTCATCAACGTTATCATTGAGAGTGACGAGCTCAAGCGTGCGGAGCACGA
AACGGTCGTGGAAGACGTCCCCAGCGACAGGTTGCGCATTCCTGCGGCCG
AGGACGCAGAGTGGACGGCACCAGATGATGCTCAGCTTATCGACGCTCTC
ATTGAGAGTGGCGAGCTCAAGCCGCCGCCGCCGCCGCCCCCGCCGCCAGA
CGAGAACACTGGCATCGGCCGCTGGCAGACGGTGAAGGTCACCACGTTCA
GTCAGGAGGAGCTGGATGCGCGGCAAGCCAAGGCGGAGGTTGCAAAGTCC
GCCAAGCAGAAGCGGCGCGCGGCGGCGGCGGCGCGCGCGGAGCGCGATAT
GGAGCTGGACTTGGCCATGGAGGCCGACGACGCCATGGGCTCGTATGACC
CCCTGGGCACGGGGCGCTACAAGGGGTTTGACCTCGAGCGCGGGGGGCAC
GACGCGGAGGAGGTTTCCGCAGAACAAAAGGCGGCAATCGCGGCGGCACT
GGAGGCGGAGAAGGGCGCCGCTGCGCCAGTAGCGTTCAAGAAGCGGAAAG
CGGCCGCGCCGGCCAAGTTCAAGCGGCGACGCACCGACGATGAATGATCA
CGTTCATGAATGATCACATAAAGTGTCAAGGA

protein sequence of jgi.p|Trimin1|348981

>Trimin1|348981|estExt_Genemark1.C_Ctg_330128 ID=Trimin1|348981|estExt_Genemark1.C_Ctg_330128|Name=jgi.p|Trimin1|348981|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=599bp
MADNKFSIKHHQEGKRHQELVVQSERDKREGKAKTEHDEKMLKKELRAIE
AAAAAAQAADMEFFGKPPGAKEGEEGPNPELADEGLYQVGGSWYFDGKRH
EDKLVKHAHCQLYIEGGIPGAPRRRAVKPEAVKREAAEAEPAAAAAAAAA
ASAPAPAPAAAAAAAAAGASAAPAVRVKEEAREAAEHDYEGAIPPPPPPL
LEATDVKPPPPPLPELEVAHGGDVPPPPPPPPLETASDEMIDVKPPPPPP
LEPTPDAMVDVEPLPPPPPPLLPGMQEAVGGEDGLAPPPPPPVGDEVDVP
PPPLEDGVEVPPPPPPLVDAGDAAEPEETDDGGVEEWIDALILEVALVAV
PNTDIRLRRHKVAYFAPGAEHETVVEDIPSDRLRIPAGEDAEWTAPDDAQ
LINVIIESDELKRAEHETVVEDVPSDRLRIPAAEDAEWTAPDDAQLIDAL
IESGELKPPPPPPPPPDENTGIGRWQTVKVTTFSQEELDARQAKAEVAKS
AKQKRRAAAAARAERDMELDLAMEADDAMGSYDPLGTGRYKGFDLERGGH
DAEEVSAEQKAAIAAALEAEKGAAAPVAFKKRKAAAPAKFKRRRTDDE*

mRNA from alignment at Contig_33:977801..985645+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6015 ID=mRNA_6015|Name=jgi.p|Trimin1|348981|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=7845bp|location=Sequence derived from alignment at Contig_33:977801..985645+ (Tribonema minus UTEX_B_3156 )
ATGGCGGACAACAAGTTCTCCATCAAGCACCACCAGGAGGGCAAGCGGCA
TCAGGAGCTGGTGGTGCAGAGCGAGAGGGACAAGAGGGAGGGCAAGGCCA
AGACGGAGCATGTGAGGAGGCACAGCTTGCACACCTTTATGTCACATACC
GCAGCACTGCAGCGCTGGCACATGCGTCGAGTGCGCCAGCGAGTACAGCC
GCTGTACTGAACGTACGGAGCAGTACCGAAAGAATACGAAGCTGAACTGA
AAGAGTACAGAGCTGTACTTGCGTACCTGGCGGTGCGTGCCGCTCGCAGG
CCATCGAAGCCAAATTCAAGCTTTGTGGACCCATATCTCTGTGTGTATGT
CGAGCAGTATGAGCCAAGTGCAGCAGCACTCAGCAGCTAGCCCCCGCTGT
GCTGTCCATTTATGCATGCTCGCATGCGCCATCGGCACTCATCTACTCGA
CTCGACCCGTTGACTCGAGTGTGCATCCCCTCACGCGGGCAGGACACGGA
ACATGTCCGAGAAGCAGCTACGCGCGCCATTGCAGCGGCGCCAGGCAGCA
CCTGGAGCACCAATGTACTCAGACTCATTTACTCGAATGCACGATCTCCC
TTGACGTGCGCAGGACGAGAAAATGCTCAAGAAGGAGCTGCGCGCCATTG
AGGCGGCAGCAGCAGCGGCTCAGGCAGCGGACATGGAATTCTTTGGCAAA
CCCCCAGGCGCGAGTGCTGCTGAAGCCCCCCTTATGGCGCCCCCCCCGCC
CCCGCCGCCCCCCCCTCCCCCCCTGCGGAGGAAGAGGAGGGGGAGGAGGG
GCCCAATCCGGAACTGGCAGATGAAGGCCTCTATCAGGTTTGCAGATGAC
AATGCTACATGCAGTGAAACGTATTGCTTGGGGGGGGGGGGGGGGGGGGG
GGGGGCAGCAGTGCTCAGTATGCGGATGGTCTGCGCGTGTGTGGTCGTCT
CTAATCGTGACACATGACCAGTTTAGGAGTGGAAGGTGCTTTGAAGGGCC
GTGGCACTGTAAACGACATCGCAGCACGGCCTGCATCATAGATGAAGGCG
GGTAGCCTGCTGAGCCTCATCATCACGTACGCACGCGTGAGCTACGCAAG
CGCGGCCGCCTCCGCCCAAAACCGTTACGCACGCACATCCGCTGGTCACC
CTTAAGCCTGACACTTGGCAATTGAAAGCAGGGAAAGTGCTTTAGAATGC
TGTAGTACTGGAAACAATGCATCGCGGCACGGCCTGCAATGTAGACAGCG
GGAGGTTGCATAGGTCCTTTTACTACCCTGCACGCCTGCATGATCTACTC
ACCGACAGTAACCGTTACGCACGTAACCGCTACGCCGCGTCAACAGGTCG
GCGGCAGCTGGTACTTTGACGGCAAGCGCCACGAGGACAAGCTCGTCAAG
CACGCGCACTGCCAGCTCTACATAGAGGGCGGCATTCCGGGCGCGCCGCG
GCGGCGCGCTGTCAAGCCGGAGGCCGTCAAGCGCGAGGCTGCGGAAGCGG
AGCCAGCGGCGGCGGCAGCAGCGGCGGCAGCAGCGTCAGCGCCAGCGCCA
GCGCCAGCGGCGGCGGCAGCGGCGGCAGCGGCGGGCGCAAGCGCGGCGCC
TGCGGTGCGCGTGAAGGAAGAGGCGCGAGGTGAGGTGTTGCGGCAGTGCT
CAGCGGTCGTGGCACAGCGCTCATGGTCTAGAGACGGGCACATTGGCCGG
GGGGGGGGCGCTCGCTGGCGGCGCATCGCGGCGTGTAGATGTCAGAAGTA
GCTGTTTAACTGTATGACAAGGGGTTGACGTGTGGGACAGGGGGTGCAGC
GGCGCTCGACGTAGCGCGCTCATATGGCGGCGGCTCATATGGCGGCGTCT
CTGAGACGCGCGAGAGCAGGTCGCCGGGCACGCGTGCGGAGCATTGCTGC
GCTTCATGGCAGAGGCACGAGTCGAGCGCCTGCGGCAGCGCTCACGGCTT
CAGTGAGCAGTTGCGTGCATTGGTCAGGCACTCATGTCCGCAACGCACCA
CGTAATACCGAACTTGGTGAGGGTGCCGCGTCAGAGGGGGGTCAGCGGGG
GCGGTCGATGACTGCGCTAACCCTAACCCTAAAAACGCTGCTGCGCTGCG
CGGCCAGCGTTTGCGCCTGCAGCATCGCGTCGGACGCCTGTCCTATGCGC
TTGGCGCCATGTACTGGCAGTATCATCATTAGAGGAGGGGAGCCAGCCAC
GGCGGGTGACCGCATGCACCGCGTCAGAGAGGCCAGGCGCGCGCTGTGAG
CAACTGCAGCAACGCTCGCCACCCAGCGCTCAGAACACCCATGCGAAACC
GCCAGGCTGAACGCGCGCCACGCCAGGCGCGCCCAAACCTGACCCTCATC
CGAACCCTAACCTGACCCTAACACTCGCTCCAGCAAGTCTGCACGACCAC
CAGCAACATCGGCTCGGTGCGTTCAGATGCCCTGTCCTCTGCGCAATGCG
CCATCTGTTGACGGTATGGTCACTGCTGACGACGGGACAGCAGAGGCGCA
TGAAAGCCCCCCCCCCCCCACACACCTGTTGATGAGGGGGGGTAACGGTC
AGGGTATTTAGGGTTAGGATGAGGCTGCGTCAGCGCTCAGGTGTCAAACA
CGCAACCCTTGGTGGTGGGTATCATATGCGAGTTGCCTAGAATCACTTGC
AATTCAACAACGACAGTTGTGCGTGCACCACCATGACGCCAAGGAGCCCA
ATGACGTACTTCTAATTATTGAAGTATCTGATGAAATTATTGTCATGTCT
GATACCTGATGCACATTCTGTCCTGTGCTTGTACTCCTTCTGCCCCTATT
GCCAGAAGCCGCCGAACACGACTACGAGGGGGCCATCCCGCCCCCACCCC
CCCCCCTGCTTGAAGCAACGGACGTGAAGCCCCCGCCGCCGCCGCTGCCT
GAACTTGAAGTTGCACATGGGGGTGACGTTCCACCACCGCCTCCCCCACC
GCCACTGGAAACCGCGTCAGACGAGATGATCGATGTGAAACCCCCGCCGC
CGCCCCCACTGGAGCCAACGCCTGACGCAATGGTGGATGTAGAGCCTTTG
CCGCCACCGCCGCCGCCACTGCTGCCGGGTATGCAAGAAGCAGTTGGAGG
GGAGGACGGTCTTGCACCGCCGCCGCCGCCGCCTGTGGGTGATGAAGTTG
ACGTGCCGCCGCCGCCATTGGAGGATGGTGTTGAAGTTCCGCCCCCTCCG
CCCCCCTTGGTGGATGCAGGGGATGCGGCTGAGCCCGAGGAAACTGACGA
TGGCGGTGTGGAGGAGGTGAGGGTGGTACTTCAAACATCAGTTTATGCAG
CTTTAGGGTATGTATGCTCCGAGGCTACCCGTGCATACACCACGCCAACC
ATGCAAGGCGCAATATAACTTGCATATCATCGGTTTGTGGTGCTTCAGCT
CTGTATACAGAGTCTCAGGGTATGTATTCCGTCATGGGGTAGGCATGCGC
GCATACCGGATTAGTCGGGGGGTTGAGCCTTCACATCAGCAACAACAGAC
TTCAAGTCAGACGATGCGTGTGGCAGCGCTTAGGCGAGTCAGCTTTCACC
GCCGCCGCCCGTAGAACGCTCTCCCATGATGAATGGTGAACGTTGTGCAA
CATCACTCCCATGTCTGCTGGGACTGCTACTGTGCAATCTTGTTTCATGC
CTCATGTATGCACGGACACGAGCTTTCCATTCCAACACTAAGCACTGCTG
AGGTGGCGGCATGCATGTATAGAGTAACGGCCCTGTGCCTGGCACGAGCG
TTTCCAACGCCGCGCACAAGTGTTTCTGACTGTGCAGCCAGGGATGGAAG
TAGCTGCTTGGCTCTTGACCACATGCATATGCAGTCGAACAAATTCAGCC
CGTGCACTGAATCCGCACCCTTGCTCGTGCGCGTCGACACGGCGACGCTG
CGGAGGCAGGCTCTAGGGCGCGCTCAATTCTCGTCATCTTTGTTGCACAT
CGTATGCTTGCACCGCCGAGAGTCACTGTGCATCACAACACCCTCAGCGG
CGTCTCCGCCACTGCTAGACTTTCTGCAGCCGTCATGTGCAGGCGTCAGC
GTTGGGGCTAGTGCTAGGGTTAGGTTAGGTTTCCTTAGGGTTAGGGTTAG
GGTGGGGCTTTACGCGCGAAGCCTCTGCTTTTCGACCTCAAGTTCGCATG
ATCCCCGTGCAGGTGTGGTCGAAGTCACGCCGCATGACAACACCTATAGG
CGACGACCACCCAGTGTCTTGCTTCTGCATGACGACCGCAAGCGTCAGAG
CGAATCTCTGCGCCTGCACAGTGCTCAGCATCGCCTGCAGGCACAGCAGC
AGCATGGGGTTAGGGTTGGGGCTGGGAGCTAGGCCTAGGATTAGGTCAGG
TTTTCGCCCCATTCTCGCTTCACGCAACAGTATGGGAATAGGGTTAGGGT
CGGGGGCTGGGGCTAGGGTCAGGGATAAGGTTACGGTTGGGCACCCCATT
CTCGCTTCACTCAACAGCATGGAAATAGGGTTGGGGCTGGGGCTAGGGTC
AGGGATAAGGTTACGGTTGGGTTTTGCGCGCAAGCATCTGCTATCGACCC
AAAATTTACATGATCCCTGTGCAGGTGGTCTCGCTCGTGACCCTCCAGCG
CGGGCCCTCTTCTAATCCCTAGCTTTCGTTTCATCGCATGCAGTGGATCG
ACGCTCTCATCCTGGAGGTGGCACTGGTGGCAGTGCCCAACACGGACATC
CGGCTGCGACGACACAAGGTTGCCTACTTTGCACCAGGTGATATATCTAT
AATACTTCAGAAGTAGTGCTTTGTGCACCATGTTCGCATCGACCGCAGTG
TGTGCGCCTTGCTGCAGTGCCGCGCGACCGTGAGTTGCGACCACGATGCC
CCCGTGTTTTTTTTGGTTTTTTTTTGTGGCACACACGTCGAAACGCGCTA
GTACGCCTTCAGGTTTGCCTGCTTCGCGCTTGGTGAACTGCTCTTGCATC
GTTGCGGTGTGTGCCACTGCCACCAGGCGCGGGGCACGAAACGGTCGTCG
ATGACGCCCCCTTCCAATTCAGCAAAAGTGCATCACGCGAATGCTGCCTG
GCATTTGGCTCCAGATTACCACCCTGCCTGTGAAGCTTACCCATACAGTA
CCATACCTTACCATACAGTACACAACATGATATCACGCGCAAGGTGCGGA
GCACGAAACGGTTGTCGAAGACATCCCCAGCGACAGGCTGCGCATCCCTG
CGGGCGAGGACGCAGAGTGGACGGCGCCCGATGATGCTCAGCTCATCAAC
GTTATCATTGAGAGTGACGAGCTCAAGCGTGCCCATTCAATTTAGCAGCA
AACAGTGCATTATACAAATGCTGCCCAGTGTTTTGCTCTGGATGCCAAGC
TTGTCTGTGAAGCATCACCTTACCTACAGTACGCAACATGATCTGGCGCG
CAATCGTTCCCAGGTGCGGAGCACGAAACGGTCGTGGAAGACGTCCCCAG
CGACAGGTTGCGCATTCCTGCGGCCGAGGACGCAGAGTGGACGGCACCAG
ATGATGCTCAGCTTATCGACGCTCTCATTGAGAGTGGCGAGCTCAAGCCG
CCGCCGCCGCCGCCCCCGCCGCCAGACGAGAACACTGGCATCGGCCGCTG
GCAGACGGTACGTGTGCGGCATACATACTTCAAGTATAATACTTAGTATC
ATGCTTATATACTTCAAGTTCATGAAGACCTTTACTTCAGGTTCTGTACA
GTAGTGTCTGTACGTATACGTCGGAGGTGCTTCTGATGTCTATGGTATGT
GTGTGTTTATACTTCACTCATGTATGCTACAGTAGTTTTCAGCGCATGCT
TTGTTGTTGCCGTGATAGTCTATGGGCGCGATTGCAACGGCTTTCACATG
AAAGAGGCTGGTGCAGCTTTGGCCAGCCCCAATAAAGGCGGCTCGGCATT
GAAAATACAAGCGCATAGAGTGTGTGCTGATGAATAGCTCATGAGTCATG
ATGGCCCAATACAAAGATGCGCTTAATCAGCGTTGCCACGGTGCGCCGAG
CAGCTGCCACGGAAGCATCTACAGCATTGCATCTGGCAATGCGCACATGT
GCATCAGCACCAATCGAGCGCATGCCTACTCACTTTGCATCCCCTCAAGC
ATCTGCGCCGTTGTGTCCCTGGCAGCCGCTATATTCATACTCTGAAATTG
TGTCATGACATCACCAATGCGAACATGTTTGTGATGCCATGTGCTCATGC
TTTGAGGTTTTGTCATACCACCACCAGCGCGAGCATGTTCATGATGCCAT
ATGCTCATACCCTGAAGTTTTGTCATGACACCACCAACGTGAGAGTGTGT
CGTATTGTGATATTCGCATCCCTGCATCAGGTGAAGGTCACCACGTTCAG
TCAGGAGGAGCTGGATGCGCGGCAAGCCAAGGCGGAGGTTGCAAAGGTGA
GAGTCACTATCGAACTTGATGTACTTGAAGTGCACTGTGAGGAGCTGGAT
GCGCAGCAAGCCAAGGCGGAGGCTGCAACGGTGGTGAGAGTCACTGTTGA
ACTTGACATACTTGAAGTGATATGCGCGTGGCTTGCCTGTGGCTGTGTGT
CTCGGCATGGCGGACGCCACAGGCATCGACCGCAGTCACTCATATCGCCG
CAGTCACTCATAACGCTGCTCTCGCGCGGTGTACGACGCAAAGCAGAAGC
ATGTATGCCGAACGCCCTCGTCCACCTTATGCGCCGATACCCGTCACCGC
CCATGCTGCTGCTGCCGGCCGTTCTGCAGTCCGCCAAGCAGAACCGCAAC
CGGCAGCTCAACCAGCCCACATTGCTCAACCTGCTGCTGCCATCAACCTG
CAGTCCGCCAAGTAGAAGCGTGACTGTCAGTGCTCCACCGGTTACATTAG
GCACAACTGCAGCGGTCCATTGTCACATTGCCCAACCTGCTGCTGCCGCC
GTCATGCAGTCCGCCAAGCAGAAGCGGCGCGCGGCGGCGGCGGCGCGCGC
GGAGCGCGATATGGAGCTGGACTTGGCCATGGAGGCCGACGACGCCATGG
GCTCGTATGACCCCCTGGGCACGGGGCGCTACAAGGGGTTTGACCTCGAG
CGCGGGGGGCACGACGCGGAGGAGGTTTCCGCAGAACAAAAGGGTATGTA
TACGCTACCATTTGTAGGTTGTTGTAGGTAGTTTCAGTTCTCGAGTTGGC
ACAAAACAGGCTCGATTGTAAAGTCAAGCTTGCTACCAGATCTACGTGTG
CCTGGTGACCAAGTGTCTCAATGCGCATTGATCATCACCTCCAAATGACA
TCACCAGTTCCGAGTGTTCTTTGTCAGCAACATGAGAGAATTACTTCCCA
ACGACATTGTCGAATGGCAGTACTTCAACCAGGTGGTTGTTTGATCATCT
GATGGCTTGTTTTGTGCAAGCAACCCTGTGAAACGCAAGTAGACATCTTC
GGCCGGCCAGGGAACCTAGCGAGGGTTTCCAGTCGGCCAAGAGGCCTCCT
TCCCCTTCCCCTCCCCCGTTGCGGCACTTCAGATGTGAAAGCAGAATGCA
GCATGCGACAGCAGCATATGAGCGCAGTTATTGCATGTGGTTCGAAAGCG
GCAGCAGATAGTTTTGCCCTCTTTGTTTGCGCACTGTCAATTGCCGTGTG
TTCGCGTGTCCTGTCCTGACAACAAATTCGCTTACTGCAATCCGTGGTTT
TTGTGACTGAGCAACTGCGTTCCCACACCTGTGACTCTCCGCAGCGGCAA
TCGCGGCGGCACTGGAGGCGGAGAAGGGCGCCGCTGCGCCAGTAGCGTTC
AAGAAGCGGAAAGCGGCCGCGCCGGCCAAGTTCAAGCGGCGACGCACCGA
CGATGAATGATCACGTTCATGAATGATCACATAAAGTGTCAAGGA

Coding sequence (CDS) from alignment at Contig_33:977801..985645+

>mRNA_6015 ID=mRNA_6015|Name=jgi.p|Trimin1|348981|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1797bp|location=Sequence derived from alignment at Contig_33:977801..985645+ (Tribonema minus UTEX_B_3156 )
ATGGCGGACAACAAGTTCTCCATCAAGCACCACCAGGAGGGCAAGCGGCA
TCAGGAGCTGGTGGTGCAGAGCGAGAGGGACAAGAGGGAGGGCAAGGCCA
AGACGGAGCATGACGAGAAAATGCTCAAGAAGGAGCTGCGCGCCATTGAG
GCGGCAGCAGCAGCGGCTCAGGCAGCGGACATGGAATTCTTTGGCAAACC
CCCAGGCGCGAAGGAGGGGGAGGAGGGGCCCAATCCGGAACTGGCAGATG
AAGGCCTCTATCAGGTCGGCGGCAGCTGGTACTTTGACGGCAAGCGCCAC
GAGGACAAGCTCGTCAAGCACGCGCACTGCCAGCTCTACATAGAGGGCGG
CATTCCGGGCGCGCCGCGGCGGCGCGCTGTCAAGCCGGAGGCCGTCAAGC
GCGAGGCTGCGGAAGCGGAGCCAGCGGCGGCGGCAGCAGCGGCGGCAGCA
GCGTCAGCGCCAGCGCCAGCGCCAGCGGCGGCGGCAGCGGCGGCAGCGGC
GGGCGCAAGCGCGGCGCCTGCGGTGCGCGTGAAGGAAGAGGCGCGAGAAG
CCGCCGAACACGACTACGAGGGGGCCATCCCGCCCCCACCCCCCCCCCTG
CTTGAAGCAACGGACGTGAAGCCCCCGCCGCCGCCGCTGCCTGAACTTGA
AGTTGCACATGGGGGTGACGTTCCACCACCGCCTCCCCCACCGCCACTGG
AAACCGCGTCAGACGAGATGATCGATGTGAAACCCCCGCCGCCGCCCCCA
CTGGAGCCAACGCCTGACGCAATGGTGGATGTAGAGCCTTTGCCGCCACC
GCCGCCGCCACTGCTGCCGGGTATGCAAGAAGCAGTTGGAGGGGAGGACG
GTCTTGCACCGCCGCCGCCGCCGCCTGTGGGTGATGAAGTTGACGTGCCG
CCGCCGCCATTGGAGGATGGTGTTGAAGTTCCGCCCCCTCCGCCCCCCTT
GGTGGATGCAGGGGATGCGGCTGAGCCCGAGGAAACTGACGATGGCGGTG
TGGAGGAGTGGATCGACGCTCTCATCCTGGAGGTGGCACTGGTGGCAGTG
CCCAACACGGACATCCGGCTGCGACGACACAAGGTTGCCTACTTTGCACC
AGGTGCGGAGCACGAAACGGTTGTCGAAGACATCCCCAGCGACAGGCTGC
GCATCCCTGCGGGCGAGGACGCAGAGTGGACGGCGCCCGATGATGCTCAG
CTCATCAACGTTATCATTGAGAGTGACGAGCTCAAGCGTGCGGAGCACGA
AACGGTCGTGGAAGACGTCCCCAGCGACAGGTTGCGCATTCCTGCGGCCG
AGGACGCAGAGTGGACGGCACCAGATGATGCTCAGCTTATCGACGCTCTC
ATTGAGAGTGGCGAGCTCAAGCCGCCGCCGCCGCCGCCCCCGCCGCCAGA
CGAGAACACTGGCATCGGCCGCTGGCAGACGGTGAAGGTCACCACGTTCA
GTCAGGAGGAGCTGGATGCGCGGCAAGCCAAGGCGGAGGTTGCAAAGTCC
GCCAAGCAGAAGCGGCGCGCGGCGGCGGCGGCGCGCGCGGAGCGCGATAT
GGAGCTGGACTTGGCCATGGAGGCCGACGACGCCATGGGCTCGTATGACC
CCCTGGGCACGGGGCGCTACAAGGGGTTTGACCTCGAGCGCGGGGGGCAC
GACGCGGAGGAGGTTTCCGCAGAACAAAAGGCGGCAATCGCGGCGGCACT
GGAGGCGGAGAAGGGCGCCGCTGCGCCAGTAGCGTTCAAGAAGCGGAAAG
CGGCCGCGCCGGCCAAGTTCAAGCGGCGACGCACCGACGATGAATGA