Trimin1|348981|estExt_Genemark1.C_Ctg_330128 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|348981
Unique Name	Trimin1\|348981\|estExt_Genemark1.C_Ctg_330128
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	599

Homology

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BLAST of jgi.p|Trimin1|348981 vs. uniprot
Match: A0A836CFV0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFV0_9STRA)

HSP 1 Score: 779 bits (2011), Expect = 1.230e-277
Identity = 598/598 (100.00%), Postives = 598/598 (100.00%), Query Frame = 0

Query:    1 MADNKFSIKHHQEGKRHQELVVQSERDKREGKAKTEHDEKMLKKELRAIEAAAAAAQAADMEFFGKPPGAKEGEEGPNPELADEGLYQVGGSWYFDGKRHEDKLVKHAHCQLYIEGGIPGAPRRRAVKPEAVKREAAEAEPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRVKEEAREAAEHDYEGAIPXXXXXLLEATDVKXXXXXLPELEVAHGGDVXXXXXXXXLETASDEMIDVKXXXXXXXXXXXXXXXXXXXLXXXXPPLLPGMQEAVGGEDGLAPXXXXPVGDEVDVXXXXXXXXXXXXXXXPPLVDAGDAAEPEETDDGGVEEWIDALILEVALVAVPNTDIRLRRHKVAYFAPGAEHETVVEDIPSDRLRIPAGEDAEWTAPDDAQLINVIIESDELKRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPPXXXXXXXDENTGIGRWQTVKVTTFSQEELDARQAKAEVAKSAKQKRRAXXXXRAERDMELDLAMEADDAMGSYDPLGTGRYKGFDLERGGHDAEEVSAEQKAAIAAALEAEKGAAAPVAFKXXXXXXXXXXXXXRTDDE 598
            MADNKFSIKHHQEGKRHQELVVQSERDKREGKAKTEHDEKMLKKELRAIEAAAAAAQAADMEFFGKPPGAKEGEEGPNPELADEGLYQVGGSWYFDGKRHEDKLVKHAHCQLYIEGGIPGAPRRRAVKPEAVKREAAEAEPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRVKEEAREAAEHDYEGAIPXXXXXLLEATDVKXXXXXLPELEVAHGGDVXXXXXXXXLETASDEMIDVKXXXXXXXXXXXXXXXXXXXLXXXXPPLLPGMQEAVGGEDGLAPXXXXPVGDEVDVXXXXXXXXXXXXXXXPPLVDAGDAAEPEETDDGGVEEWIDALILEVALVAVPNTDIRLRRHKVAYFAPGAEHETVVEDIPSDRLRIPAGEDAEWTAPDDAQLINVIIESDELKRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPPXXXXXXXDENTGIGRWQTVKVTTFSQEELDARQAKAEVAKSAKQKRRAXXXXRAERDMELDLAMEADDAMGSYDPLGTGRYKGFDLERGGHDAEEVSAEQKAAIAAALEAEKGAAAPVAFKXXXXXXXXXXXXXRTDDE
Sbjct:    1 MADNKFSIKHHQEGKRHQELVVQSERDKREGKAKTEHDEKMLKKELRAIEAAAAAAQAADMEFFGKPPGAKEGEEGPNPELADEGLYQVGGSWYFDGKRHEDKLVKHAHCQLYIEGGIPGAPRRRAVKPEAVKREAAEAEPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRVKEEAREAAEHDYEGAIPXXXXXLLEATDVKXXXXXLPELEVAHGGDVXXXXXXXXLETASDEMIDVKXXXXXXXXXXXXXXXXXXXLXXXXPPLLPGMQEAVGGEDGLAPXXXXPVGDEVDVXXXXXXXXXXXXXXXPPLVDAGDAAEPEETDDGGVEEWIDALILEVALVAVPNTDIRLRRHKVAYFAPGAEHETVVEDIPSDRLRIPAGEDAEWTAPDDAQLINVIIESDELKRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPPXXXXXXXDENTGIGRWQTVKVTTFSQEELDARQAKAEVAKSAKQKRRAXXXXRAERDMELDLAMEADDAMGSYDPLGTGRYKGFDLERGGHDAEEVSAEQKAAIAAALEAEKGAAAPVAFKXXXXXXXXXXXXXRTDDE 598

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BLAST of jgi.p|Trimin1|348981 vs. uniprot
Match: A0A6H5JFI0_9PHAE (Matrin-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFI0_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 6.440e-10
Identity = 75/222 (33.78%), Postives = 94/222 (42.34%), Query Frame = 0

Query:  337 WIDALILEVALVAVPNTDIRL------------RRHKVAYFAPGAEHETVVEDIPSDRLRIPAGEDAEWTAPDDAQLINVIIESDELKRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPPXXXXXXXDENTGIGRWQTVKVTTFS-QEELDARQAKAEVAKSAKQKRRAXXXXRAERDMELDLAMEADDAMGSYDPLGTGRYKGFDL 545
            W+DA++L +A    P  D               RR  +AYF  GAE ETV+  + +  +R+PAGE   W AP +                                                           PPXXXX   DENTG+G WQTV V       E +AR+ K EV    K     XXXX   R+  L  AM+ADDAMGSYDP GTG+YKGF++
Sbjct:  238 WVDAVVLALADSEQPPHDATAAGDASAGIMATTRRLDLAYFEAGAEKETVLRGVEAAAVRLPAGEGGAWPAPREM----------------------------------------------------------PPXXXX---DENTGLGGWQTVSVRMVDVAAEAEARRVKKEV----KXXXXXXXXXXXXREKMLVEAMDADDAMGSYDPWGTGKYKGFEI 394

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BLAST of jgi.p|Trimin1|348981 vs. uniprot
Match: K3WLJ6_GLOUD (Matrin-type domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WLJ6_GLOUD)

HSP 1 Score: 61.2 bits (147), Expect = 2.380e-6
Identity = 45/148 (30.41%), Postives = 68/148 (45.95%), Query Frame = 0

Query:    1 MADNKFSIKHHQEGKRHQELVVQSERDKREGKAKTEHDEKMLKKELRAIEAAAAAAQAADMEFFGKPPGAKEGEEGPNPELA---------------------------------DEGLYQVGGSWYFDGKRHEDKLVKHAHCQLYIE 115
            M  +K +IKHH++GK+H+ELV ++ + KR+ K++  H E+ L+ +LR IE AA A  A DM   G  P                                               D G+Y + G  + +GKRHEDKL   + CQ+++E
Sbjct:   14 MQGDKTAIKHHEQGKKHKELVEETLKQKRKAKSEAYHSERDLQDQLREIEEAAQAKYAQDMARSGVLPXXXXXXXXXXXXXXXXXXXARXXXXXXXXXXXXXXXXXXXXXXXKEDDHGIYAIRGEVFLEGKRHEDKLETGSACQIWVE 161

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|348981 vs. uniprot

BLAST of jgi.p|Trimin1|348981 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
A0A836CFV0_9STRA	1.230e-277	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A6H5JFI0_9PHAE	6.440e-10	33.78	Matrin-type domain-containing protein n=2 Tax=Ecto...	[more]
K3WLJ6_GLOUD	2.380e-6	30.41	Matrin-type domain-containing protein n=1 Tax=Glob...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 32..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 242..274
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 191..235
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 284..320
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..330
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..42
None	No IPR available	PANTHER	PTHR13037:SF21	PROTEIN CAPPUCCINO	coord: 120..466
None	No IPR available	PANTHER	PTHR13037	FORMIN	coord: 120..466

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_33	contig	Contig_33:977801..985610 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|348981	mRNA_6015	Tribonema minus UTEX_B_3156	mRNA	Contig_33 977801..985645 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|348981|estExt_Genemark1.C_Ctg_330128 ID=Trimin1|348981|estExt_Genemark1.C_Ctg_330128|Name=jgi.p|Trimin1|348981|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=599bp
MADNKFSIKHHQEGKRHQELVVQSERDKREGKAKTEHDEKMLKKELRAIE
AAAAAAQAADMEFFGKPPGAKEGEEGPNPELADEGLYQVGGSWYFDGKRH
EDKLVKHAHCQLYIEGGIPGAPRRRAVKPEAVKREAAEAEPAAAAAAAAA
ASAPAPAPAAAAAAAAAGASAAPAVRVKEEAREAAEHDYEGAIPPPPPPL
LEATDVKPPPPPLPELEVAHGGDVPPPPPPPPLETASDEMIDVKPPPPPP
LEPTPDAMVDVEPLPPPPPPLLPGMQEAVGGEDGLAPPPPPPVGDEVDVP
PPPLEDGVEVPPPPPPLVDAGDAAEPEETDDGGVEEWIDALILEVALVAV
PNTDIRLRRHKVAYFAPGAEHETVVEDIPSDRLRIPAGEDAEWTAPDDAQ
LINVIIESDELKRAEHETVVEDVPSDRLRIPAAEDAEWTAPDDAQLIDAL
IESGELKPPPPPPPPPDENTGIGRWQTVKVTTFSQEELDARQAKAEVAKS
AKQKRRAAAAARAERDMELDLAMEADDAMGSYDPLGTGRYKGFDLERGGH
DAEEVSAEQKAAIAAALEAEKGAAAPVAFKKRKAAAPAKFKRRRTDDE*