Trimin1|348980|estExt_Genemark1.C_Ctg_330127 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|348980
Unique NameTrimin1|348980|estExt_Genemark1.C_Ctg_330127
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length585
Homology
BLAST of jgi.p|Trimin1|348980 vs. uniprot
Match: A0A836CE38_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE38_9STRA)

HSP 1 Score: 838 bits (2166), Expect = 1.170e-301
Identity = 584/584 (100.00%), Postives = 584/584 (100.00%), Query Frame = 0
Query:    1 MVRATSRTRQRLVCALALACLPWDGLHAHAAAXXXXXXXXXXXXXNKPSAKKRKSRRRPGDSGSSPAKPLGTISEAERESGESSGGGAQADEPQTSTSASWPTSTSSSEKLAPPLFNAPLRPGRAHTVAEAGLEGFLPLQQRLVRYFTDDRAFALQAAGSLWFAAHAALTLAAPSAAAMDPLRMYRSALAGVAAKNAALLAQRVRRVALPPLLAAEAPGGGARAYARFRARAAALARDPAAQALVYCALMATLGGSGXXXXXXXXXXXXXXXXXPLVVNEGAWLXXXXXXXXXXXAPPRALRAAASRLAQWPMAALVARGDVKAWQEMGEAEWRAAVGRRVAQASLKLEVAVMALVLLRVYPRAMTAPNKIASIASFALFASTFARYLRVRSAQLGGDTRVLGGGAALCGVPLAPLELLLDSAAYAAPLGLPRWAGAAFALFQAASPARIAAARAWYATSPLAAKLGGXXXXXXXXXXXXXRGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMSAEAQQRSESEGXXAGDGRGADAEGVAGGAGGPGDINGSDAADSDASDGSEEDSDED 584
            MVRATSRTRQRLVCALALACLPWDGLHAHAAAXXXXXXXXXXXXXNKPSAKKRKSRRRPGDSGSSPAKPLGTISEAERESGESSGGGAQADEPQTSTSASWPTSTSSSEKLAPPLFNAPLRPGRAHTVAEAGLEGFLPLQQRLVRYFTDDRAFALQAAGSLWFAAHAALTLAAPSAAAMDPLRMYRSALAGVAAKNAALLAQRVRRVALPPLLAAEAPGGGARAYARFRARAAALARDPAAQALVYCALMATLGGSGXXXXXXXXXXXXXXXXXPLVVNEGAWLXXXXXXXXXXXAPPRALRAAASRLAQWPMAALVARGDVKAWQEMGEAEWRAAVGRRVAQASLKLEVAVMALVLLRVYPRAMTAPNKIASIASFALFASTFARYLRVRSAQLGGDTRVLGGGAALCGVPLAPLELLLDSAAYAAPLGLPRWAGAAFALFQAASPARIAAARAWYATSPLAAKLGGXXXXXXXXXXXXXRGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMSAEAQQRSESEGXXAGDGRGADAEGVAGGAGGPGDINGSDAADSDASDGSEEDSDED
Sbjct:    1 MVRATSRTRQRLVCALALACLPWDGLHAHAAAXXXXXXXXXXXXXNKPSAKKRKSRRRPGDSGSSPAKPLGTISEAERESGESSGGGAQADEPQTSTSASWPTSTSSSEKLAPPLFNAPLRPGRAHTVAEAGLEGFLPLQQRLVRYFTDDRAFALQAAGSLWFAAHAALTLAAPSAAAMDPLRMYRSALAGVAAKNAALLAQRVRRVALPPLLAAEAPGGGARAYARFRARAAALARDPAAQALVYCALMATLGGSGXXXXXXXXXXXXXXXXXPLVVNEGAWLXXXXXXXXXXXAPPRALRAAASRLAQWPMAALVARGDVKAWQEMGEAEWRAAVGRRVAQASLKLEVAVMALVLLRVYPRAMTAPNKIASIASFALFASTFARYLRVRSAQLGGDTRVLGGGAALCGVPLAPLELLLDSAAYAAPLGLPRWAGAAFALFQAASPARIAAARAWYATSPLAAKLGGXXXXXXXXXXXXXRGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMSAEAQQRSESEGXXAGDGRGADAEGVAGGAGGPGDINGSDAADSDASDGSEEDSDED 584          
BLAST of jgi.p|Trimin1|348980 vs. uniprot
Match: A0A835YJH6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJH6_9STRA)

HSP 1 Score: 228 bits (582), Expect = 4.160e-61
Identity = 157/322 (48.76%), Postives = 195/322 (60.56%), Query Frame = 0
Query:  123 GRAHTVAEAGLEGFLPLQQRLVRYFTDDRAFALQAAGSLWFAAHAA-LTLAAPSAAAMDPLRMYRSALAGVAAKNAALLAQRVRRVALPPLLAAEAPGGGARAYARFRARAAALARDPAAQALVYCALMATLGGSGXXXXXXXXXXXXXXXXXPLVVNEGAWLXXXXXXXXXXXAPPRALRAAASRLAQWPMAALVARGDVKAWQEMGEAEWRAAVGRRVAQASLKLEVAVMALVLLRVYPRAMTAPNKIASIASFALFASTFARYLRVRSAQLGGDTRVLGGGAALCGVPLAPLELLLDSAAYAAPLGLPRWAGAAFALFQ 443
            G+AHT AEAGL+GFLPLQQRL++YFTDD+ F +Q AGSL+FAA+AA L L++   A+    R Y+ AL  +  K   ++  R+RR  +P L  A  PG     +  FRARA ALARDPA Q  ++CAL  T                      PL + EGA+L           AP RAL A  + L +WP A LVA+GDV+AW+ MGE      VGRRV+QA  KLEVA +   LLR YPRAM A NK+A+ A+FAL+   +A+ L VR AQLGGD RVL G   L GV L  LEL++DSA YA  LGLPRW     A+FQ
Sbjct:   26 GQAHTAAEAGLDGFLPLQQRLIKYFTDDKLFTVQIAGSLYFAANAAILALSSAPDASAARARAYQGALLALIIKYWCVVLGRMRRTLVPGL--AREPGK----FGLFRARARALARDPAVQTSLFCALALT------------RQPPLSAALAPLALREGAYLFLVAREVVSIAAP-RALPALGA-LVRWPAAVLVAKGDVRAWRAMGEGAQLVEVGRRVSQACFKLEVAALGAALLRDYPRAMKADNKLAAAAAFALYIGAYAQLLSVRHAQLGGDVRVLSG-LKLGGVGLGWLELVVDSALYARMLGLPRWTAFLMAVFQ 326          
BLAST of jgi.p|Trimin1|348980 vs. uniprot
Match: D8LSM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSM7_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 1.010e-19
Identity = 105/363 (28.93%), Postives = 158/363 (43.53%), Query Frame = 0
Query:  103 TSTSSSEKLAP--PLFNAPLRPGRAHTVAEAGLEGFLPLQQRLVRYFTDDRAFALQAAGSLWFAAHAALTLAAPSAAAMDPLRM---YRSALAGVAAKNAALLAQRVRRVALPPLLAAEAPGGGARAYARFRARAAALARDPAAQALVYCALMATLGGSGXXXXXXXXXXXXXXXXXPLVVNEGAWLXXXXXXXXXXXAPPRALRAAASRLAQWPMAALVARGDVKAWQEMGEAEWRAAVGRRVAQASLKLEVAVMALVLLRVYPRAMTAP------------------------NKIASIASFALFASTFARYLRVRSAQLGGDTRVLGGGAALCGVPLAPLELLLDSAAYAAPLGLPRWAG 436
            T+T   E+  P  PLF+ P  P    T AE GL+  LP+QQRLV+Y T+DR F +Q   S++F   A   L       MD  +    Y++ALA +  K    +  RVRRV +P L+         + Y ++RAR +ALA DPA Q +VYC +   +  S                  PL++ E  +L           AP   L    + L++  M+  +  GD + W++    E R  +GRR+AQA  KLE+ +   V LRV P  +                            +   +    +    + + L V++ QL  D R+L G   + G     +E  +DS  +   +G P WAG
Sbjct:  244 TATEGEERRRPVAPLFSFPPGPRVRRTEAEDGLQEVLPVQQRLVKYLTEDRVFGVQILCSIYFFMSAVAYL-------MDSTKFGGSYQAALAVLTLKQWGTVVGRVRRVLVPHLIYEP------QRYVKYRARVSALALDPAVQGIVYCGIFMLMPLS--------------LALIPLLLKESVYLLWVMKEALQITAP--GLVETLTTLSEPLMSVFMTAGDSEKWRDTPAGEKRLLLGRRLAQACFKLEMVMPFGVALRVLPAVLQTSLGAGGGVADGEGAEGAAAGAGGQLGRALPLVKVLVLVMAYVKLLVVKNGQLEDDVRILSG-LKIRGYDCEWIERGVDSVVFGMMVGCPWWAG 576          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348980 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A836CE38_9STRA1.170e-301100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YJH6_9STRA4.160e-6148.76Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LSM7_ECTSI1.010e-1928.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 87..112
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 473..584
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..119

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_33contigContig_33:973240..975991 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348980mRNA_6013Tribonema minus UTEX_B_3156 mRNAContig_33 972545..975991 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|348980|estExt_Genemark1.C_Ctg_330127 ID=Trimin1|348980|estExt_Genemark1.C_Ctg_330127|Name=jgi.p|Trimin1|348980|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=585bp
MVRATSRTRQRLVCALALACLPWDGLHAHAAAASGAAAASTARGANKPSA
KKRKSRRRPGDSGSSPAKPLGTISEAERESGESSGGGAQADEPQTSTSAS
WPTSTSSSEKLAPPLFNAPLRPGRAHTVAEAGLEGFLPLQQRLVRYFTDD
RAFALQAAGSLWFAAHAALTLAAPSAAAMDPLRMYRSALAGVAAKNAALL
AQRVRRVALPPLLAAEAPGGGARAYARFRARAAALARDPAAQALVYCALM
ATLGGSGSSGGGGDSAELLRAALLPLVVNEGAWLLLAAREALVVAAPPRA
LRAAASRLAQWPMAALVARGDVKAWQEMGEAEWRAAVGRRVAQASLKLEV
AVMALVLLRVYPRAMTAPNKIASIASFALFASTFARYLRVRSAQLGGDTR
VLGGGAALCGVPLAPLELLLDSAAYAAPLGLPRWAGAAFALFQAASPARI
AAARAWYATSPLAAKLGGGGGGGSGSGGGGGRGDGGGDGGTSGSGGSSEA
EDGSGEAASGADLADVDDENDSGDAVMSAEAQQRSESEGGGAGDGRGADA
EGVAGGAGGPGDINGSDAADSDASDGSEEDSDED*
back to top