mRNA_6013 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|348980
Unique NamemRNA_6013
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|348980 vs. uniprot
Match: A0A836CE38_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE38_9STRA)

HSP 1 Score: 826 bits (2134), Expect = 4.730e-293
Identity = 576/584 (98.63%), Postives = 576/584 (98.63%), Query Frame = 1
Query:    1 MVRATSRTRQRLVCALALACLPWDGLHAHAAAXXXXXXXXXXXXXNKPSAKKRKSRRRPGDSGSSPAKPLGTISEAERESGESSGGGAQADEPQTSTSASWPTSTSSSEKLAPPLFNAPLRPGRAHTVAEAGLEGFLPLQQRLVRYFTDDRAFALQAAGSLWFAAHAALTLAAPSAAAMDPLRMYRSALAGVAAKNAALLAQRVRRVALPPLLAAEAPGGGARAYARFRARAAALARDPAAQALVYCALMATLGGSGXXXXXXXXXXXXXXXXXPLVVNEGAWLXXXXXXXXXXXAPPRALRAAASRLAQWPMAALVARGDVKAWQEMGEAEWRAAVGRRVAQASLKLEVAVMALVLLRVYPRAMTAPNKIASIASFALFASTFARYLRVRSAQLGGDTRVLGGGAALCGVPLAPLELLLDSAAYAAPLGLPRWAGAAFALFQAASPARIAAARAWYATSPLAAKLGGXXXXXXXXXXXXXRGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMSAEAQQRSESXXXXXXXXRGADAEGVAGGAGGPGDINGSDAADSDAXXGSEEDSDED 1752
            MVRATSRTRQRLVCALALACLPWDGLHAHAAAXXXXXXXXXXXXXNKPSAKKRKSRRRPGDSGSSPAKPLGTISEAERESGESSGGGAQADEPQTSTSASWPTSTSSSEKLAPPLFNAPLRPGRAHTVAEAGLEGFLPLQQRLVRYFTDDRAFALQAAGSLWFAAHAALTLAAPSAAAMDPLRMYRSALAGVAAKNAALLAQRVRRVALPPLLAAEAPGGGARAYARFRARAAALARDPAAQALVYCALMATLGGSGXXXXXXXXXXXXXXXXXPLVVNEGAWLXXXXXXXXXXXAPPRALRAAASRLAQWPMAALVARGDVKAWQEMGEAEWRAAVGRRVAQASLKLEVAVMALVLLRVYPRAMTAPNKIASIASFALFASTFARYLRVRSAQLGGDTRVLGGGAALCGVPLAPLELLLDSAAYAAPLGLPRWAGAAFALFQAASPARIAAARAWYATSPLAAKLGGXXXXXXXXXXXXXRGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMSAEAQQRSES  XX    RGADAEGVAGGAGGPGDINGSDAADSDA  GSEEDSDED
Sbjct:    1 MVRATSRTRQRLVCALALACLPWDGLHAHAAAXXXXXXXXXXXXXNKPSAKKRKSRRRPGDSGSSPAKPLGTISEAERESGESSGGGAQADEPQTSTSASWPTSTSSSEKLAPPLFNAPLRPGRAHTVAEAGLEGFLPLQQRLVRYFTDDRAFALQAAGSLWFAAHAALTLAAPSAAAMDPLRMYRSALAGVAAKNAALLAQRVRRVALPPLLAAEAPGGGARAYARFRARAAALARDPAAQALVYCALMATLGGSGXXXXXXXXXXXXXXXXXPLVVNEGAWLXXXXXXXXXXXAPPRALRAAASRLAQWPMAALVARGDVKAWQEMGEAEWRAAVGRRVAQASLKLEVAVMALVLLRVYPRAMTAPNKIASIASFALFASTFARYLRVRSAQLGGDTRVLGGGAALCGVPLAPLELLLDSAAYAAPLGLPRWAGAAFALFQAASPARIAAARAWYATSPLAAKLGGXXXXXXXXXXXXXRGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMSAEAQQRSESEGXXAGDGRGADAEGVAGGAGGPGDINGSDAADSDASDGSEEDSDED 584          
BLAST of jgi.p|Trimin1|348980 vs. uniprot
Match: A0A835YJH6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJH6_9STRA)

HSP 1 Score: 228 bits (582), Expect = 2.860e-59
Identity = 157/322 (48.76%), Postives = 195/322 (60.56%), Query Frame = 1
Query:  367 GRAHTVAEAGLEGFLPLQQRLVRYFTDDRAFALQAAGSLWFAAHAA-LTLAAPSAAAMDPLRMYRSALAGVAAKNAALLAQRVRRVALPPLLAAEAPGGGARAYARFRARAAALARDPAAQALVYCALMATLGGSGXXXXXXXXXXXXXXXXXPLVVNEGAWLXXXXXXXXXXXAPPRALRAAASRLAQWPMAALVARGDVKAWQEMGEAEWRAAVGRRVAQASLKLEVAVMALVLLRVYPRAMTAPNKIASIASFALFASTFARYLRVRSAQLGGDTRVLGGGAALCGVPLAPLELLLDSAAYAAPLGLPRWAGAAFALFQ 1329
            G+AHT AEAGL+GFLPLQQRL++YFTDD+ F +Q AGSL+FAA+AA L L++   A+    R Y+ AL  +  K   ++  R+RR  +P L  A  PG     +  FRARA ALARDPA Q  ++CAL  T                      PL + EGA+L           AP RAL A  + L +WP A LVA+GDV+AW+ MGE      VGRRV+QA  KLEVA +   LLR YPRAM A NK+A+ A+FAL+   +A+ L VR AQLGGD RVL G   L GV L  LEL++DSA YA  LGLPRW     A+FQ
Sbjct:   26 GQAHTAAEAGLDGFLPLQQRLIKYFTDDKLFTVQIAGSLYFAANAAILALSSAPDASAARARAYQGALLALIIKYWCVVLGRMRRTLVPGL--AREPGK----FGLFRARARALARDPAVQTSLFCALALT------------RQPPLSAALAPLALREGAYLFLVAREVVSIAAP-RALPALGA-LVRWPAAVLVAKGDVRAWRAMGEGAQLVEVGRRVSQACFKLEVAALGAALLRDYPRAMKADNKLAAAAAFALYIGAYAQLLSVRHAQLGGDVRVLSG-LKLGGVGLGWLELVVDSALYARMLGLPRWTAFLMAVFQ 326          
BLAST of jgi.p|Trimin1|348980 vs. uniprot
Match: D8LSM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSM7_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 2.380e-19
Identity = 105/363 (28.93%), Postives = 158/363 (43.53%), Query Frame = 1
Query:  307 TSTSSSEKLAP--PLFNAPLRPGRAHTVAEAGLEGFLPLQQRLVRYFTDDRAFALQAAGSLWFAAHAALTLAAPSAAAMDPLRM---YRSALAGVAAKNAALLAQRVRRVALPPLLAAEAPGGGARAYARFRARAAALARDPAAQALVYCALMATLGGSGXXXXXXXXXXXXXXXXXPLVVNEGAWLXXXXXXXXXXXAPPRALRAAASRLAQWPMAALVARGDVKAWQEMGEAEWRAAVGRRVAQASLKLEVAVMALVLLRVYPRAMTAP------------------------NKIASIASFALFASTFARYLRVRSAQLGGDTRVLGGGAALCGVPLAPLELLLDSAAYAAPLGLPRWAG 1308
            T+T   E+  P  PLF+ P  P    T AE GL+  LP+QQRLV+Y T+DR F +Q   S++F   A   L       MD  +    Y++ALA +  K    +  RVRRV +P L+         + Y ++RAR +ALA DPA Q +VYC +   +  S                  PL++ E  +L           AP   L    + L++  M+  +  GD + W++    E R  +GRR+AQA  KLE+ +   V LRV P  +                            +   +    +    + + L V++ QL  D R+L G   + G     +E  +DS  +   +G P WAG
Sbjct:  244 TATEGEERRRPVAPLFSFPPGPRVRRTEAEDGLQEVLPVQQRLVKYLTEDRVFGVQILCSIYFFMSAVAYL-------MDSTKFGGSYQAALAVLTLKQWGTVVGRVRRVLVPHLIYEP------QRYVKYRARVSALALDPAVQGIVYCGIFMLMPLS--------------LALIPLLLKESVYLLWVMKEALQITAP--GLVETLTTLSEPLMSVFMTAGDSEKWRDTPAGEKRLLLGRRLAQACFKLEMVMPFGVALRVLPAVLQTSLGAGGGVADGEGAEGAAAGAGGQLGRALPLVKVLVLVMAYVKLLVVKNGQLEDDVRILSG-LKIRGYDCEWIERGVDSVVFGMMVGCPWWAG 576          
BLAST of jgi.p|Trimin1|348980 vs. uniprot
Match: A0A836CF13_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF13_9STRA)

HSP 1 Score: 3023 bits (7838), Expect = 0.000e+0
Identity = 1947/1947 (100.00%), Postives = 1947/1947 (100.00%), Query Frame = 1
Query:    1 MLEAYPKEGLSFEENERLHATVAELRRAVPSVAKLVALEVGLERTAAEDKGRRALELLRRKDATIRQLQQRLRTGAFKGSTDEHQQQQQQQXXXXXXXXXXXXXXXXXXXXXXXHAAELQAALDASNNEAAELRKQGREQAQALQALLDEVARLRHQAATSDCAATAGDDDAAALRKKLTDVEVERLERLQATAKQTVLASESALKQAVSQLQAQGTTAAAIASASAPERLKEQHQLREQLASSKERALLGVYLGELSLEVKRLRQALHDQSLALALAKQGELRIEAEARAKDRAWADKTAVLSAANAALAQGLETAKRAGAAQLELQRRTIDTLRGRGDLAAALAAARAELSRESEARVSAQGDAAVQRQEALDRRAVAATVAEPDASAAACGVTASTLLDHFAGTAAAQALRIKQLTHDNTKLKDVVRRHDGNAGAGSARIDSGGGTDAWSAALSSAACSALRLRAEALEKELEEAPXXXXXXXXXXXXXXXXRDEALSTAEVDLLSAREEIEALRAALADLRNADAIGGHVSQRQQGASAESTLAAEIQSLRSLLDERESQVRVLTASVEALQGTTTCSAAAEAGSDGEGLESGLAVLSRLGAQGMLKHCIGLTIQRRLQATLSSLKAEQSTKERAVAELRALRDEGRQRIGDAVEENRRLRLSLAQAHKNCVRETERAAKAVAEASTWEATARDARERHARDMTTAMKDANQRVQEALERAFATHNDSSSAMARAVQDAVHEWTRDSSNAQSSRGKSGLPRRAVHTFQTIAATLDATTQSAVRKSRWLEWDARRLRQLLAAEKMRCEEQAAEIARLAGVLEVTQRVRAAAAAAAEGGEVFDFCAPMISMHAEQEMDLLDAAAARAGAEVKAAQALERAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSGGASDTDLRKYLLQNIESWWECPGQPMRSPAWGGDLQLTPQDAMAAALVASKLDAVQHEGRLDRAIRARDTAAAHARGGADAVLREWEALAAETARLRQQLSTAQGQLTSMGAQAARQACAMRQLRALCDRLRADESRARETLADRLSGVRQELGRRFVLGEVKETLAEERLRFTREVAAQTAETMRLRAEITQLKLRLQRVAADLAEQLRVEQRGRRDAEAECDRLATECAKLKSQLRGLGDHADAQRQALDHLQKQLEKCAAAVGYVLGDVLPVGAPPPGPLAKALVEAKVAMADLDRRLRATAAGETRVRRMLARRDRRIAEAQSGGIIVIWRWCSDLEAFDPSVPAAKLWKRVSDQTAIIHSLELQLAEAVAGGGGQRSTAARDHRDAEDPIGGCPVCAALREQLRDAEARRIKAESERDTIVTSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSERLPAAEIARLASRVEDLSQELAEEQARNTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLQVEHELSALRLKFARGKFSAATPPAQELLEQLAEMRRSAKAEATKLRSQLAAASAALKAKPTKADMEALVQEVERRARTTAVLRGAQLAEEAKVTALKSRMQELELQLQQSQRDVQAKTSLVSDLKRKREELEASLAAATAHARATSVARGGFASAEEATALKDKLKALTTERGRLRTQQKAAESXXXXXXXXXXXXXXXXKMAALNQEFLQHKAAVAAWQQDAHASLQESDQEAGLCQRATHAIAQKLSALQSALVTALQALYDDALAATSTVXXXXXXXXXXXXXXXXXXXXXXXXXXXTVDEVDNIVGAERAQERAAFAAHARAAAEAGDAALLSAVLYALRDVQHAAAXXXXXXXXXXXXXXXXGLSPMPATAPQSPDNREAERASFEQQQQQWPRQQDSLLQSPNPLQRSPVQSPPQRRRHADMQSPRLQQPPPYPLPHSPISARMSQVSSFASFDDDGSDVDIDAVGDFDPDTEPPLVSVPPGKGGMGGWFEVEGQVLDDS 5841
            MLEAYPKEGLSFEENERLHATVAELRRAVPSVAKLVALEVGLERTAAEDKGRRALELLRRKDATIRQLQQRLRTGAFKGSTDEHQQQQQQQXXXXXXXXXXXXXXXXXXXXXXXHAAELQAALDASNNEAAELRKQGREQAQALQALLDEVARLRHQAATSDCAATAGDDDAAALRKKLTDVEVERLERLQATAKQTVLASESALKQAVSQLQAQGTTAAAIASASAPERLKEQHQLREQLASSKERALLGVYLGELSLEVKRLRQALHDQSLALALAKQGELRIEAEARAKDRAWADKTAVLSAANAALAQGLETAKRAGAAQLELQRRTIDTLRGRGDLAAALAAARAELSRESEARVSAQGDAAVQRQEALDRRAVAATVAEPDASAAACGVTASTLLDHFAGTAAAQALRIKQLTHDNTKLKDVVRRHDGNAGAGSARIDSGGGTDAWSAALSSAACSALRLRAEALEKELEEAPXXXXXXXXXXXXXXXXRDEALSTAEVDLLSAREEIEALRAALADLRNADAIGGHVSQRQQGASAESTLAAEIQSLRSLLDERESQVRVLTASVEALQGTTTCSAAAEAGSDGEGLESGLAVLSRLGAQGMLKHCIGLTIQRRLQATLSSLKAEQSTKERAVAELRALRDEGRQRIGDAVEENRRLRLSLAQAHKNCVRETERAAKAVAEASTWEATARDARERHARDMTTAMKDANQRVQEALERAFATHNDSSSAMARAVQDAVHEWTRDSSNAQSSRGKSGLPRRAVHTFQTIAATLDATTQSAVRKSRWLEWDARRLRQLLAAEKMRCEEQAAEIARLAGVLEVTQRVRAAAAAAAEGGEVFDFCAPMISMHAEQEMDLLDAAAARAGAEVKAAQALERAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSGGASDTDLRKYLLQNIESWWECPGQPMRSPAWGGDLQLTPQDAMAAALVASKLDAVQHEGRLDRAIRARDTAAAHARGGADAVLREWEALAAETARLRQQLSTAQGQLTSMGAQAARQACAMRQLRALCDRLRADESRARETLADRLSGVRQELGRRFVLGEVKETLAEERLRFTREVAAQTAETMRLRAEITQLKLRLQRVAADLAEQLRVEQRGRRDAEAECDRLATECAKLKSQLRGLGDHADAQRQALDHLQKQLEKCAAAVGYVLGDVLPVGAPPPGPLAKALVEAKVAMADLDRRLRATAAGETRVRRMLARRDRRIAEAQSGGIIVIWRWCSDLEAFDPSVPAAKLWKRVSDQTAIIHSLELQLAEAVAGGGGQRSTAARDHRDAEDPIGGCPVCAALREQLRDAEARRIKAESERDTIVTSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSERLPAAEIARLASRVEDLSQELAEEQARNTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLQVEHELSALRLKFARGKFSAATPPAQELLEQLAEMRRSAKAEATKLRSQLAAASAALKAKPTKADMEALVQEVERRARTTAVLRGAQLAEEAKVTALKSRMQELELQLQQSQRDVQAKTSLVSDLKRKREELEASLAAATAHARATSVARGGFASAEEATALKDKLKALTTERGRLRTQQKAAESXXXXXXXXXXXXXXXXKMAALNQEFLQHKAAVAAWQQDAHASLQESDQEAGLCQRATHAIAQKLSALQSALVTALQALYDDALAATSTVXXXXXXXXXXXXXXXXXXXXXXXXXXXTVDEVDNIVGAERAQERAAFAAHARAAAEAGDAALLSAVLYALRDVQHAAAXXXXXXXXXXXXXXXXGLSPMPATAPQSPDNREAERASFEQQQQQWPRQQDSLLQSPNPLQRSPVQSPPQRRRHADMQSPRLQQPPPYPLPHSPISARMSQVSSFASFDDDGSDVDIDAVGDFDPDTEPPLVSVPPGKGGMGGWFEVEGQVLDDS
Sbjct:    1 MLEAYPKEGLSFEENERLHATVAELRRAVPSVAKLVALEVGLERTAAEDKGRRALELLRRKDATIRQLQQRLRTGAFKGSTDEHQQQQQQQXXXXXXXXXXXXXXXXXXXXXXXHAAELQAALDASNNEAAELRKQGREQAQALQALLDEVARLRHQAATSDCAATAGDDDAAALRKKLTDVEVERLERLQATAKQTVLASESALKQAVSQLQAQGTTAAAIASASAPERLKEQHQLREQLASSKERALLGVYLGELSLEVKRLRQALHDQSLALALAKQGELRIEAEARAKDRAWADKTAVLSAANAALAQGLETAKRAGAAQLELQRRTIDTLRGRGDLAAALAAARAELSRESEARVSAQGDAAVQRQEALDRRAVAATVAEPDASAAACGVTASTLLDHFAGTAAAQALRIKQLTHDNTKLKDVVRRHDGNAGAGSARIDSGGGTDAWSAALSSAACSALRLRAEALEKELEEAPXXXXXXXXXXXXXXXXRDEALSTAEVDLLSAREEIEALRAALADLRNADAIGGHVSQRQQGASAESTLAAEIQSLRSLLDERESQVRVLTASVEALQGTTTCSAAAEAGSDGEGLESGLAVLSRLGAQGMLKHCIGLTIQRRLQATLSSLKAEQSTKERAVAELRALRDEGRQRIGDAVEENRRLRLSLAQAHKNCVRETERAAKAVAEASTWEATARDARERHARDMTTAMKDANQRVQEALERAFATHNDSSSAMARAVQDAVHEWTRDSSNAQSSRGKSGLPRRAVHTFQTIAATLDATTQSAVRKSRWLEWDARRLRQLLAAEKMRCEEQAAEIARLAGVLEVTQRVRAAAAAAAEGGEVFDFCAPMISMHAEQEMDLLDAAAARAGAEVKAAQALERAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSGGASDTDLRKYLLQNIESWWECPGQPMRSPAWGGDLQLTPQDAMAAALVASKLDAVQHEGRLDRAIRARDTAAAHARGGADAVLREWEALAAETARLRQQLSTAQGQLTSMGAQAARQACAMRQLRALCDRLRADESRARETLADRLSGVRQELGRRFVLGEVKETLAEERLRFTREVAAQTAETMRLRAEITQLKLRLQRVAADLAEQLRVEQRGRRDAEAECDRLATECAKLKSQLRGLGDHADAQRQALDHLQKQLEKCAAAVGYVLGDVLPVGAPPPGPLAKALVEAKVAMADLDRRLRATAAGETRVRRMLARRDRRIAEAQSGGIIVIWRWCSDLEAFDPSVPAAKLWKRVSDQTAIIHSLELQLAEAVAGGGGQRSTAARDHRDAEDPIGGCPVCAALREQLRDAEARRIKAESERDTIVTSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSERLPAAEIARLASRVEDLSQELAEEQARNTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLQVEHELSALRLKFARGKFSAATPPAQELLEQLAEMRRSAKAEATKLRSQLAAASAALKAKPTKADMEALVQEVERRARTTAVLRGAQLAEEAKVTALKSRMQELELQLQQSQRDVQAKTSLVSDLKRKREELEASLAAATAHARATSVARGGFASAEEATALKDKLKALTTERGRLRTQQKAAESXXXXXXXXXXXXXXXXKMAALNQEFLQHKAAVAAWQQDAHASLQESDQEAGLCQRATHAIAQKLSALQSALVTALQALYDDALAATSTVXXXXXXXXXXXXXXXXXXXXXXXXXXXTVDEVDNIVGAERAQERAAFAAHARAAAEAGDAALLSAVLYALRDVQHAAAXXXXXXXXXXXXXXXXGLSPMPATAPQSPDNREAERASFEQQQQQWPRQQDSLLQSPNPLQRSPVQSPPQRRRHADMQSPRLQQPPPYPLPHSPISARMSQVSSFASFDDDGSDVDIDAVGDFDPDTEPPLVSVPPGKGGMGGWFEVEGQVLDDS 1947          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348980 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A836CE38_9STRA4.730e-29398.63Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YJH6_9STRA2.860e-5948.76Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LSM7_ECTSI2.380e-1928.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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BLAST of jgi.p|Trimin1|348980 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CF13_9STRA0.000e+0100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_33contigContig_33:972545..975991 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|348980|estExt_Genemark1.C_Ctg_330127
Hectar predicted targeting categorychloroplast
TranscriptId349302
TrackFilteredModels1
ProteinId348980
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348980gene_6013Tribonema minus UTEX_B_3156 geneContig_33 972545..975991 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6013_3exon_6013_3Tribonema minus UTEX_B_3156 exonContig_33 972545..973715 -
exon_6013_2exon_6013_2Tribonema minus UTEX_B_3156 exonContig_33 974089..974257 -
exon_6013_1exon_6013_1Tribonema minus UTEX_B_3156 exonContig_33 974882..975991 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_6013UTR3_6013Tribonema minus UTEX_B_3156 three_prime_UTRContig_33 972545..973239 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6013CDS_6013Tribonema minus UTEX_B_3156 CDSContig_33 974882..975991 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348980Trimin1|348980|estExt_Genemark1.C_Ctg_330127Tribonema minus UTEX_B_3156 polypeptideContig_33 973240..975991 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6013 ID=mRNA_6013|Name=jgi.p|Trimin1|348980|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2450bp|location=Sequence derived from alignment at Contig_33:972545..975991- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCGAGCCACAAGCCGCACGCGGCAACGACTGGTCTGTGCCCTGGC
GCTGGCATGCCTGCCGTGGGACGGCTTGCACGCGCACGCAGCAGCTGCCA
GCGGCGCCGCCGCCGCCAGCACTGCACGCGGTGCGAACAAGCCCAGTGCG
AAGAAGCGAAAGTCCCGCAGACGGCCCGGCGACAGCGGATCATCGCCAGC
GAAACCGCTGGGCACTATCAGCGAGGCAGAGCGTGAATCTGGCGAGAGCA
GCGGCGGCGGCGCGCAGGCAGATGAACCACAAACTTCAACTTCAGCTTCA
TGGCCAACTTCAACTTCATCCTCAGAGAAGCTGGCGCCGCCGCTCTTCAA
CGCGCCGCTGCGCCCCGGGCGCGCCCACACGGTCGCGGAGGCTGGCCTCG
AGGGCTTCCTGCCGCTGCAGCAGCGCCTCGTGCGCTACTTCACCGACGAC
AGGGCCTTCGCGCTGCAGGCCGCGGGCAGCCTCTGGTTCGCTGCGCACGC
CGCGCTGACACTGGCAGCGCCCTCCGCCGCAGCAATGGACCCGCTGCGCA
TGTATCGCAGCGCGCTCGCGGGCGTCGCGGCCAAGAACGCGGCGCTGCTC
GCGCAGCGCGTGCGCCGCGTCGCGCTGCCGCCGCTGCTCGCCGCCGAAGC
CCCGGGCGGCGGTGCGCGCGCCTACGCGCGCTTCCGCGCGCGCGCCGCCG
CGCTCGCGCGCGACCCCGCCGCGCAGGCGCTCGTGTACTGCGCGCTGATG
GCGACGCTCGGCGGCAGCGGCAGCAGCGGCGGAGGCGGCGATTCGGCGGA
GCTGCTGCGCGCCGCGCTGCTGCCGCTGGTGGTGAACGAGGGCGCATGGC
TGCTGCTGGCCGCGCGCGAGGCGCTGGTGGTGGCGGCGCCGCCGCGCGCG
CTGCGCGCTGCCGCGTCGCGGCTCGCGCAGTGGCCGATGGCGGCGCTCGT
TGCAAGGGGGGATGTCAAGGCGTGGCAGGAGATGGGGGAGGCGGAGTGGC
GCGCGGCGGTGGGGCGGCGCGTTGCGCAGGCGAGCTTGAAGTTGGAGGTG
GCGGTGATGGCGCTGGTGCTGCTGCGCGTGTACCCGCGCGCGATGACAGC
GCCCAATAAGATCGCATCCATCGCCTCCTTCGCGCTCTTCGCGTCGACCT
TCGCGCGCTACCTGCGCGTCCGCAGCGCTCAGCTCGGCGGCGACACGCGC
GTCCTCGGCGGCGGCGCGGCGCTCTGCGGCGTCCCCCTAGCGCCGCTCGA
GCTGCTTCTCGACAGCGCCGCGTACGCAGCGCCGCTCGGCCTGCCGCGCT
GGGCCGGCGCGGCGTTCGCGCTCTTCCAGGCGGCGTCGCCGGCGCGCATC
GCCGCTGCGCGCGCGTGGTACGCGACGTCGCCCCTCGCCGCCAAGCTCGG
CGGCGGCGGCGGCGGCGGCAGCGGCAGCGGTGGGGGTGGCGGCAGGGGTG
ACGGCGGCGGCGACGGCGGCACGAGCGGCAGCGGCGGCAGCAGTGAGGCG
GAAGACGGCAGCGGCGAGGCCGCTTCTGGCGCGGATCTTGCGGATGTCGA
TGATGAGAATGACAGCGGCGACGCGGTGATGAGTGCAGAGGCGCAGCAGC
GCTCAGAGAGCGAGGGAGGAGGGGCAGGGGATGGGCGGGGGGCAGATGCG
GAGGGGGTCGCAGGGGGGGCCGGGGGGCCGGGGGACATAAATGGCTCGGA
CGCCGCTGACAGCGACGCGTCCGATGGAAGCGAAGAGGATTCGGACGAAG
ATTGAGCGCGAGGTAGCGGCAGCGCTCCGGCAGCAGCAGTGCTCAGGTGG
CAGCAGCGGCAGTGCTCATCTTAAGAGTCGATGCGCACAATGCCAACCCT
GCTGCGTCATGGACAGCCGATGGGGAGCTGGCTCAGCGAGGCGCTCGGGC
GGCGTGTGGCGAGTGCGCGAGCACTGCTGCCATGCGCTCCGCTCACAAAC
GTGCGGCGGCGTGTGCGCCGGCCGGCGCCAGCGCGGTGTCGCGGCGCGGC
GCCGATGCTCACGCTCACGTTTTCAAAGGGGGTCAGACAGCCAAGGGAAG
CGTTCACTAAGACGGAGCTGGGGCACGGCTCTGACAAGTGAAATGAGGCA
ACGTCTCATGGAGCGGAAGCCATGCGCATGCATAAGCCCTCGCATGACCC
TAGTTCTAACCCAAGGGCAGACGCGTCCAGCCGCAGCCCGCAAGGCTTTG
GGGCGGCTTCCGGATGATGCGCATGCTGCACGCAGTGTGGCGCTGCGTGG
CCACGCGAGCGCAGGCAGCGCAGCTTCCGTTGTCTCTCGAACATGAATGT
TCACATTCGACGTGCGAGGGCATTGCTCAGCTGGGCGCCAGCGATGTACG
AAATGCACGGGGTCCACTGGGGGGCAAGCCACCACCAGCTTGCTATGGCG
AAGGGCCTGCATCAAGCGGTTGAACCGGCAATTGACTACATTTCATGTTG
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protein sequence of jgi.p|Trimin1|348980

>Trimin1|348980|estExt_Genemark1.C_Ctg_330127 ID=Trimin1|348980|estExt_Genemark1.C_Ctg_330127|Name=jgi.p|Trimin1|348980|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=585bp
MVRATSRTRQRLVCALALACLPWDGLHAHAAAASGAAAASTARGANKPSA
KKRKSRRRPGDSGSSPAKPLGTISEAERESGESSGGGAQADEPQTSTSAS
WPTSTSSSEKLAPPLFNAPLRPGRAHTVAEAGLEGFLPLQQRLVRYFTDD
RAFALQAAGSLWFAAHAALTLAAPSAAAMDPLRMYRSALAGVAAKNAALL
AQRVRRVALPPLLAAEAPGGGARAYARFRARAAALARDPAAQALVYCALM
ATLGGSGSSGGGGDSAELLRAALLPLVVNEGAWLLLAAREALVVAAPPRA
LRAAASRLAQWPMAALVARGDVKAWQEMGEAEWRAAVGRRVAQASLKLEV
AVMALVLLRVYPRAMTAPNKIASIASFALFASTFARYLRVRSAQLGGDTR
VLGGGAALCGVPLAPLELLLDSAAYAAPLGLPRWAGAAFALFQAASPARI
AAARAWYATSPLAAKLGGGGGGGSGSGGGGGRGDGGGDGGTSGSGGSSEA
EDGSGEAASGADLADVDDENDSGDAVMSAEAQQRSESEGGGAGDGRGADA
EGVAGGAGGPGDINGSDAADSDASDGSEEDSDED*
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mRNA from alignment at Contig_33:972545..975991-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6013 ID=mRNA_6013|Name=jgi.p|Trimin1|348980|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3447bp|location=Sequence derived from alignment at Contig_33:972545..975991- (Tribonema minus UTEX_B_3156 )
ATGGTGCGAGCCACAAGCCGCACGCGGCAACGACTGGTCTGTGCCCTGGC GCTGGCATGCCTGCCGTGGGACGGCTTGCACGCGCACGCAGCAGCTGCCA GCGGCGCCGCCGCCGCCAGCACTGCACGCGGTGCGAACAAGCCCAGTGCG AAGAAGCGAAAGTCCCGCAGACGGCCCGGCGACAGCGGATCATCGCCAGC GAAACCGCTGGGCACTATCAGCGAGGCAGAGCGTGAATCTGGCGAGAGCA GCGGCGGCGGCGCGCAGGCAGATGAACCACAAACTTCAACTTCAGCTTCA TGGCCAACTTCAACTTCATCCTCAGAGAAGCTGGCGCCGCCGCTCTTCAA CGCGCCGCTGCGCCCCGGGCGCGCCCACACGGTCGCGGAGGCTGGCCTCG AGGGCTTCCTGCCGCTGCAGCAGCGCCTCGTGCGCTACTTCACCGACGAC AGGGCCTTCGCGCTGCAGGCCGCGGGCAGCCTCTGGTTCGCTGCGCACGC CGCGCTGACACTGGCAGCGCCCTCCGCCGCAGCAATGGACCCGCTGCGCA TGTATCGCAGCGCGCTCGCGGGCGTCGCGGCCAAGAACGCGGCGCTGCTC GCGCAGCGCGTGCGCCGCGTCGCGCTGCCGCCGCTGCTCGCCGCCGAAGC CCCGGGCGGCGGTGCGCGCGCCTACGCGCGCTTCCGCGCGCGCGCCGCCG CGCTCGCGCGCGACCCCGCCGCGCAGGCGCTCGTGTACTGCGCGCTGATG GCGACGCTCGGCGGCAGCGGCAGCAGCGGCGGAGGCGGCGATTCGGCGGA GCTGCTGCGCGCCGCGCTGCTGCCGCTGGTGGTGAACGAGGGCGCATGGC TGCTGCTGGCCGCGCGCGAGGCGCTGGTGGTGGCGGCGCCGCCGCGCGCG CTGCGCGCTGCCGCGTCGCGGCTCGCGCAGTGGCCGATGGCGGCGCTCGT TGCAAGGGGGGATGTCAAGGCGTGGCAGGAGATGGGGGAGGCGGAGTGGC GCGCGGCGGTGGGGCGGCGCGTTGCGCAGGCGAGCTTGAAGTTGGAGGTG GCGGTGATGGCGCTGGTGCTGCTGCGCGTGTACCCGCGCGCGATGACAGC GCCCAATAAGGTGGGGCGTGTGCGTATGCTCTCGCCGCAGGGATAGAATG GGCATCAGCGATGTTCCTTATGTGCCTTGAGTTGTGCTTCCGCGGGTTGG TCGGCATCGACGGTGCAGGGCACTTCAAGATGTTTGTACTTCTATGTACA TGAGGGTGACAAGGTTGCAGTAAGGCAGGAAAGGTATATGTGCGCGCACG AGTAGGCAGAGAGGCAGGAGAGTAGAAAAGGCAACGGTCCACCTTGGTGC TGAGATAGTCGACGCGCTAGTGCAGGGTGTTGTTCATGCCATTGCTGTCA CTGTCGGCAGCTTCTATAACGGGGGCACCCTTGTGCAACTCCGGTCAATT AATTAGCAGCGGCAGGTGTGCACTATTGATGGCAGTCCACCAATGCCTCG ACTTCAGCATGCAAGCCCGGTGCCACCTGCAGCTTTATCATCAATGCTCC GTTGTATCAGCAACTGCACACGGCTGGCACCGGCGATGTTTTGCACCGTC AAAACACATGCCACATCAACTCGAACACGAATTAATACCACAGCACACTT GCGCCTCCCGGTTTGCACAGCCCAAACATCCTCACTATTGCAACGCCCCC TCCCCCCCCCCTCCCCCTCTCCTCCCCCCCCCAGATCGCATCCATCGCCT CCTTCGCGCTCTTCGCGTCGACCTTCGCGCGCTACCTGCGCGTCCGCAGC GCTCAGCTCGGCGGCGACACGCGCGTCCTCGGCGGCGGCGCGGCGCTCTG CGGCGTCCCCCTAGCGCCGCTCGAGCTGCTTCTCGACAGCGCCGCGTACG CAGGTACTCGCCTTATGTGTTTGTTGTGTGCTTATATGTGTTAGTTGAAG TGCTTGTTGTCCTGATTGAAATGTCGTCGATGAGGTGCAGGACTTCGCGC AGGTGCGCGCGCGGAGCGTCCGTCGACGCGGGCATACGCACTTGTACTCT CTTGTCAACTCTCGCTCAGGGCGCGTGCACTCCGTTGCCTTGCGACGGAC GCCCTGCAGCTGCAGCTCTTTGCCTAGAACGCCGTATCTTCCATGTAAGA CTGGATTCGACAAGACAGTGTTTGGTGCAGGTCTTGGCGTGTGGGTGGGT GTTTCCCATGATCAGACGTTGTTGAAGTTGCAAAAATGCCAAAATTTGAT CCACCATACACACCACGCGTATGCAGCGCCGCTCGGCCTGCCGCGCTGGG CCGGCGCGGCGTTCGCGCTCTTCCAGGCGGCGTCGCCGGCGCGCATCGCC GCTGCGCGCGCGTGGTACGCGACGTCGCCCCTCGCCGCCAAGCTCGGCGG CGGCGGCGGCGGCGGCAGCGGCAGCGGTGGGGGTGGCGGCAGGGGTGACG GCGGCGGCGACGGCGGCACGAGCGGCAGCGGCGGCAGCAGTGAGGCGGAA GACGGCAGCGGCGAGGCCGCTTCTGGCGCGGATCTTGCGGATGTCGATGA TGAGAATGACAGCGGCGACGCGGTGATGAGTGCAGAGGCGCAGCAGCGCT CAGAGAGCGAGGGAGGAGGGGCAGGGGATGGGCGGGGGGCAGATGCGGAG GGGGTCGCAGGGGGGGCCGGGGGGCCGGGGGACATAAATGGCTCGGACGC CGCTGACAGCGACGCGTCCGATGGAAGCGAAGAGGATTCGGACGAAGATT GAGCGCGAGGTAGCGGCAGCGCTCCGGCAGCAGCAGTGCTCAGGTGGCAG CAGCGGCAGTGCTCATCTTAAGAGTCGATGCGCACAATGCCAACCCTGCT GCGTCATGGACAGCCGATGGGGAGCTGGCTCAGCGAGGCGCTCGGGCGGC GTGTGGCGAGTGCGCGAGCACTGCTGCCATGCGCTCCGCTCACAAACGTG CGGCGGCGTGTGCGCCGGCCGGCGCCAGCGCGGTGTCGCGGCGCGGCGCC GATGCTCACGCTCACGTTTTCAAAGGGGGTCAGACAGCCAAGGGAAGCGT TCACTAAGACGGAGCTGGGGCACGGCTCTGACAAGTGAAATGAGGCAACG TCTCATGGAGCGGAAGCCATGCGCATGCATAAGCCCTCGCATGACCCTAG TTCTAACCCAAGGGCAGACGCGTCCAGCCGCAGCCCGCAAGGCTTTGGGG CGGCTTCCGGATGATGCGCATGCTGCACGCAGTGTGGCGCTGCGTGGCCA CGCGAGCGCAGGCAGCGCAGCTTCCGTTGTCTCTCGAACATGAATGTTCA CATTCGACGTGCGAGGGCATTGCTCAGCTGGGCGCCAGCGATGTACGAAA TGCACGGGGTCCACTGGGGGGCAAGCCACCACCAGCTTGCTATGGCGAAG GGCCTGCATCAAGCGGTTGAACCGGCAATTGACTACATTTCATGTTG
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Coding sequence (CDS) from alignment at Contig_33:972545..975991-

>mRNA_6013 ID=mRNA_6013|Name=jgi.p|Trimin1|348980|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1755bp|location=Sequence derived from alignment at Contig_33:972545..975991- (Tribonema minus UTEX_B_3156 )
ATGGTGCGAGCCACAAGCCGCACGCGGCAACGACTGGTCTGTGCCCTGGC
GCTGGCATGCCTGCCGTGGGACGGCTTGCACGCGCACGCAGCAGCTGCCA
GCGGCGCCGCCGCCGCCAGCACTGCACGCGGTGCGAACAAGCCCAGTGCG
AAGAAGCGAAAGTCCCGCAGACGGCCCGGCGACAGCGGATCATCGCCAGC
GAAACCGCTGGGCACTATCAGCGAGGCAGAGCGTGAATCTGGCGAGAGCA
GCGGCGGCGGCGCGCAGGCAGATGAACCACAAACTTCAACTTCAGCTTCA
TGGCCAACTTCAACTTCATCCTCAGAGAAGCTGGCGCCGCCGCTCTTCAA
CGCGCCGCTGCGCCCCGGGCGCGCCCACACGGTCGCGGAGGCTGGCCTCG
AGGGCTTCCTGCCGCTGCAGCAGCGCCTCGTGCGCTACTTCACCGACGAC
AGGGCCTTCGCGCTGCAGGCCGCGGGCAGCCTCTGGTTCGCTGCGCACGC
CGCGCTGACACTGGCAGCGCCCTCCGCCGCAGCAATGGACCCGCTGCGCA
TGTATCGCAGCGCGCTCGCGGGCGTCGCGGCCAAGAACGCGGCGCTGCTC
GCGCAGCGCGTGCGCCGCGTCGCGCTGCCGCCGCTGCTCGCCGCCGAAGC
CCCGGGCGGCGGTGCGCGCGCCTACGCGCGCTTCCGCGCGCGCGCCGCCG
CGCTCGCGCGCGACCCCGCCGCGCAGGCGCTCGTGTACTGCGCGCTGATG
GCGACGCTCGGCGGCAGCGGCAGCAGCGGCGGAGGCGGCGATTCGGCGGA
GCTGCTGCGCGCCGCGCTGCTGCCGCTGGTGGTGAACGAGGGCGCATGGC
TGCTGCTGGCCGCGCGCGAGGCGCTGGTGGTGGCGGCGCCGCCGCGCGCG
CTGCGCGCTGCCGCGTCGCGGCTCGCGCAGTGGCCGATGGCGGCGCTCGT
TGCAAGGGGGGATGTCAAGGCGTGGCAGGAGATGGGGGAGGCGGAGTGGC
GCGCGGCGGTGGGGCGGCGCGTTGCGCAGGCGAGCTTGAAGTTGGAGGTG
GCGGTGATGGCGCTGGTGCTGCTGCGCGTGTACCCGCGCGCGATGACAGC
GCCCAATAAGATCGCATCCATCGCCTCCTTCGCGCTCTTCGCGTCGACCT
TCGCGCGCTACCTGCGCGTCCGCAGCGCTCAGCTCGGCGGCGACACGCGC
GTCCTCGGCGGCGGCGCGGCGCTCTGCGGCGTCCCCCTAGCGCCGCTCGA
GCTGCTTCTCGACAGCGCCGCGTACGCAGCGCCGCTCGGCCTGCCGCGCT
GGGCCGGCGCGGCGTTCGCGCTCTTCCAGGCGGCGTCGCCGGCGCGCATC
GCCGCTGCGCGCGCGTGGTACGCGACGTCGCCCCTCGCCGCCAAGCTCGG
CGGCGGCGGCGGCGGCGGCAGCGGCAGCGGTGGGGGTGGCGGCAGGGGTG
ACGGCGGCGGCGACGGCGGCACGAGCGGCAGCGGCGGCAGCAGTGAGGCG
GAAGACGGCAGCGGCGAGGCCGCTTCTGGCGCGGATCTTGCGGATGTCGA
TGATGAGAATGACAGCGGCGACGCGGTGATGAGTGCAGAGGCGCAGCAGC
GCTCAGAGAGCGAGGGAGGAGGGGCAGGGGATGGGCGGGGGGCAGATGCG
GAGGGGGTCGCAGGGGGGGCCGGGGGGCCGGGGGACATAAATGGCTCGGA
CGCCGCTGACAGCGACGCGTCCGATGGAAGCGAAGAGGATTCGGACGAAG
ATTGA
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