mRNA_6004 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|348975
Unique NamemRNA_6004
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|348975 vs. uniprot
Match: A0A835YVR1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVR1_9STRA)

HSP 1 Score: 586 bits (1510), Expect = 8.080e-212
Identity = 280/280 (100.00%), Postives = 280/280 (100.00%), Query Frame = 1 
Query:    1 MQTRKKARDGSASARVMQHAELLRCMVEYLGDDKDLCSFATLSRTARDDRMWTPALECLCQEFPLPECSSFEIPEDDNLSPAAPPGFVRLARHKIINSSPKFNSDTGVLEFAFTTDSHAEFNAHCHSWRHCENHMDPSERVSAQFVDPRHAEPECFARLPAVRQWAALHKYVAAVMRRLHAPLTNAGGRANMKSTAEWACDSLLEHRYLQEDIRNQALARLSTSSAARGSTKLCVSDFEAIGLRPGSWAREAIVHGWADWCPDGSSSSRELLFCITGVHF 840
            MQTRKKARDGSASARVMQHAELLRCMVEYLGDDKDLCSFATLSRTARDDRMWTPALECLCQEFPLPECSSFEIPEDDNLSPAAPPGFVRLARHKIINSSPKFNSDTGVLEFAFTTDSHAEFNAHCHSWRHCENHMDPSERVSAQFVDPRHAEPECFARLPAVRQWAALHKYVAAVMRRLHAPLTNAGGRANMKSTAEWACDSLLEHRYLQEDIRNQALARLSTSSAARGSTKLCVSDFEAIGLRPGSWAREAIVHGWADWCPDGSSSSRELLFCITGVHF
Sbjct:    1 MQTRKKARDGSASARVMQHAELLRCMVEYLGDDKDLCSFATLSRTARDDRMWTPALECLCQEFPLPECSSFEIPEDDNLSPAAPPGFVRLARHKIINSSPKFNSDTGVLEFAFTTDSHAEFNAHCHSWRHCENHMDPSERVSAQFVDPRHAEPECFARLPAVRQWAALHKYVAAVMRRLHAPLTNAGGRANMKSTAEWACDSLLEHRYLQEDIRNQALARLSTSSAARGSTKLCVSDFEAIGLRPGSWAREAIVHGWADWCPDGSSSSRELLFCITGVHF 280
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BLAST of jgi.p|Trimin1|348975 vs. uniprot
Match: A0A835YTA7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTA7_9STRA)

HSP 1 Score: 294 bits (753), Expect = 1.160e-95
Identity = 158/289 (54.67%), Postives = 190/289 (65.74%), Query Frame = 1 
Query:    4 QTRKKARDGSASARVMQHAELLRCMVEYLGDDKDLCSFATLSRTARDDRMWTPALECLCQEFPLPECSSFEIPEDDNLSPAAPPGFVRLARHKIINS----SPKFNSDTGVLEFAFTT---------------------------DSHAEFNAHCHSWRHCENHMDPSERVSAQFVDPRHAEPECFARLPAVRQWAALHKYVAAVMRRLHAPLTNAGGRANMKSTAEWACDSLLEHRYLQEDIRNQALARLSTSSAARGSTKLCVSDFEAIGLRPGSWAREAIVHGWAD 777
            +T KK RDGSASARVMQ AELL+C VEYLGDDKDLCS ATL RTARDD +W+P +  LC EFPLP+ S    P  + +   APPGFVR   H+        SP+FN DTGVLEF F +                           DSHA F AHC SWRHCE+  +PSERV A FVDPRHA+PE FA+LPA RQWAAL ++V+AV+R+L  PL +A  RANM+  A+WA D L +H +L ED   QALA ++TSSAAR  T  C+ D ++ GL PGS+AR AIV GWA+
Sbjct:   59 ETLKKTRDGSASARVMQRAELLQCAVEYLGDDKDLCSAATLCRTARDDTIWSPLVNRLCNEFPLPQYSHV-TPGFNEMDMEAPPGFVRPEMHEHGMDDPYLSPRFNRDTGVLEFGFVSPNEFVLNWYGRSKRACQKCRRSRAGRADSHAAFRAHCRSWRHCESRREPSERVPAAFVDPRHADPERFAQLPAARQWAALRRHVSAVLRQLRVPLADARVRANMERLADWARDELCDHEFLHEDEVQQALAGVTTSSAARACTDFCIGDLKSNGLCPGSYARVAIVDGWAN 346
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BLAST of jgi.p|Trimin1|348975 vs. uniprot
Match: A0A835YLJ0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLJ0_9STRA)

HSP 1 Score: 288 bits (738), Expect = 7.780e-95
Identity = 152/280 (54.29%), Postives = 184/280 (65.71%), Query Frame = 1 
Query:    1 MQTRKKARDGSASARVMQHAELLRCMVEYLGDDKDLCSFATLSRTARDDRMWTPALECLCQEFPLPECSSFEIPEDDNLSPAAPPGFVRLARHKIINSSPKFNSDTGVLEFAFTTDSHAEFNAHCHSWRHCENHMDPSERVSAQFVDPRHAEPECFARLPAVRQWAALHKYVAAVMRRLHAPLTNAGGRANMKSTAEWACDSLLEHRYLQEDIRNQALARLSTSSAARGSTKLCVSDFEAIGLRPGSWAREAIVHGWADWCPDGSSSSRELLFCITGVHF 840
            MQTRKKA DGSASARVMQ AELL+C+VEYLGDD+DLCS ATL RTA DD +W+P L  LC EFP PE   +++P          PGF                          TTDSHA F+AHCHSW HCE+  D   R+ A FVDPRHA+PE FA+LPA R+WAAL  ++  V+RRL  PLT+A  RANMK  A+W  D+L +H    ED   QALAR++T S AR  T  C+S+ E+ GL PGS+AR+AIV GWA+W P G+SS+  LL+CITGV F
Sbjct:    1 MQTRKKACDGSASARVMQRAELLQCVVEYLGDDEDLCSAATLCRTASDDSIWSPLLNRLCYEFPQPE---YDLP--------IIPGF--------------------------TTDSHAAFSAHCHSWHHCESRKDLRWRLPAAFVDPRHADPEGFAQLPAARRWAALRMHMTKVLRRLRVPLTDAAVRANMKFLADWVRDALCDHELFHEDEVQQALARVTTRSTARACTGFCISELESNGLCPGSYARDAIVDGWANWGPSGTSSANALLWCITGVDF 243
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BLAST of jgi.p|Trimin1|348975 vs. uniprot
Match: A0A835YVI4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVI4_9STRA)

HSP 1 Score: 233 bits (593), Expect = 9.580e-70
Identity = 134/281 (47.69%), Postives = 163/281 (58.01%), Query Frame = 1 
Query:    1 MQTRKKARDGSASARVMQHAELLRCMVEYLGDDKDLCSFATLSRTARDDRMWTPALECLCQEFPLPECSSFEIPEDDNLSPAAPPGFVRLARHKIINSSPKFNSDTGVLEFAFTTDSHAEFNAHCHSWRHCENHMDPSERVSAQFVDPRHAEPECFARLPAVRQWAALHKYVAAVMRRLHAPLTNAGGRANMKSTAEWACDSLLEHRYLQEDIRNQA-----LARLSTSSAARGSTKLCVSDFEAIGLRPGSWAREAIVHGWADWCPDGSSSSRELLFCIT 828
            MQTRKKARDGS SA VMQHAELL+CMVEYLGDDKDLCS A LSR A  D++W+  L+   QEFPL E     IP                                      FTTD++A F  HC SW H EN MDP ERV A+FVDPRH +PE FA+LPAVRQWAALHK+V  VM+  HAP  +   +A + S  + A + L E  + ++D  + A     LA ++TSSA RG  + CV  F   GL P S AR+ +V GWA WC    +S R LL C++
Sbjct:  251 MQTRKKARDGSFSASVMQHAELLQCMVEYLGDDKDLCSEARLSRVACSDKVWSVVLKRFSQEFPLREWEFASIP-------------------------------------GFTTDTYAAFREHCCSWHHRENRMDPRERVPARFVDPRHDDPEGFAQLPAVRQWAALHKHVTTVMQYFHAPPADRRAQATVDSIVQCAQEVLYE--FAEDDELDDAELEHELALITTSSALRGRAEWCVDQFRDHGLWPLSVARDMVVDGWASWCTGEYASKRLLLCCVS 492
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BLAST of jgi.p|Trimin1|348975 vs. uniprot
Match: A0A835Z5U8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5U8_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 6.800e-11
Identity = 46/122 (37.70%), Postives = 57/122 (46.72%), Query Frame = 1 
Query:  403 MDPSERVSAQFVDPRHAEPECFARLPAVRQWAALHKYVAAVMRRLHAPLTNAGGRANMKSTAEWACDSLLEHRYLQEDIRNQALARLSTSSAARGSTKLCVSDFEAIGLRPGSWAREAIVHG 768
            M+P +RV ++F +PRHA+PE FA+LPAVRQWAAL  +VA V + L  PL  AG                                     S   GS  L + DF   GLRP   AR  +VHG
Sbjct:    1 MNPPKRVPSRFANPRHADPEGFAQLPAVRQWAALRMHVATVEQYLGLPLAVAG-----------------------------------VGSIMAGSD-LILYDFGRAGLRPEPNARSVVVHG 86
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348975 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835YVR1_9STRA8.080e-212100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YTA7_9STRA1.160e-9554.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YLJ0_9STRA7.780e-9554.29Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YVI4_9STRA9.580e-7047.69Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z5U8_9STRA6.800e-1137.70Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_33contigContig_33:895035..896651 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|348975|estExt_Genemark1.C_Ctg_330118
Hectar predicted targeting categoryother localisation
TranscriptId349297
TrackFilteredModels1
ProteinId348975
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348975gene_6004Tribonema minus UTEX_B_3156 geneContig_33 895035..896651 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6004_1exon_6004_1Tribonema minus UTEX_B_3156 exonContig_33 895035..895095 +
exon_6004_2exon_6004_2Tribonema minus UTEX_B_3156 exonContig_33 895328..895601 +
exon_6004_3exon_6004_3Tribonema minus UTEX_B_3156 exonContig_33 896132..896651 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6004CDS_6004Tribonema minus UTEX_B_3156 CDSContig_33 895035..895095 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_6004UTR3_6004Tribonema minus UTEX_B_3156 three_prime_UTRContig_33 896640..896651 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348975Trimin1|348975|estExt_Genemark1.C_Ctg_330118Tribonema minus UTEX_B_3156 polypeptideContig_33 895035..896639 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6004 ID=mRNA_6004|Name=jgi.p|Trimin1|348975|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=855bp|location=Sequence derived from alignment at Contig_33:895035..896651+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGACGCGCAAGAAGGCCCGCGATGGATCCGCCTCGGCGAGGGTGAT
GCAGCACGCTGAACTGCTGCGGTGCATGGTCGAGTATCTGGGCGATGACA
AGGACCTCTGCAGCTTCGCCACTCTATCCAGGACCGCCCGCGACGACAGG
ATGTGGACCCCGGCACTGGAGTGCCTGTGTCAGGAGTTTCCGCTGCCGGA
GTGCTCTTCATTTGAGATCCCAGAAGACGACAACTTGAGCCCGGCAGCAC
CCCCGGGCTTTGTGCGCCTAGCCCGACATAAAATCATCAACAGCTCACCA
AAATTCAATAGCGACACTGGAGTGCTGGAGTTTGCGTTCACCACCGACAG
CCATGCGGAGTTCAATGCGCACTGCCACTCGTGGCGCCACTGTGAGAACC
ACATGGACCCAAGCGAGCGCGTTTCCGCGCAGTTCGTCGACCCGCGCCAC
GCAGAACCCGAATGCTTTGCGCGACTGCCAGCGGTGCGGCAGTGGGCCGC
GCTCCACAAGTACGTGGCCGCAGTGATGCGGAGGCTGCACGCGCCGCTGA
CGAACGCGGGAGGGCGCGCCAACATGAAGTCCACGGCCGAGTGGGCGTGC
GACTCGCTGCTTGAGCACAGATACTTGCAAGAGGACATCCGCAACCAGGC
GCTGGCGCGGCTCTCAACGAGCAGCGCTGCGCGCGGAAGCACAAAGCTGT
GTGTCAGCGACTTTGAGGCTATAGGCCTGAGGCCGGGGTCCTGGGCACGC
GAAGCGATTGTGCACGGGTGGGCCGACTGGTGCCCAGACGGCTCGAGCAG
CAGCCGCGAGCTGCTGTTCTGCATCACTGGAGTCCACTTCTGAGGGTAGT
GCGGC
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protein sequence of jgi.p|Trimin1|348975

>Trimin1|348975|estExt_Genemark1.C_Ctg_330118 ID=Trimin1|348975|estExt_Genemark1.C_Ctg_330118|Name=jgi.p|Trimin1|348975|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=281bp
MQTRKKARDGSASARVMQHAELLRCMVEYLGDDKDLCSFATLSRTARDDR
MWTPALECLCQEFPLPECSSFEIPEDDNLSPAAPPGFVRLARHKIINSSP
KFNSDTGVLEFAFTTDSHAEFNAHCHSWRHCENHMDPSERVSAQFVDPRH
AEPECFARLPAVRQWAALHKYVAAVMRRLHAPLTNAGGRANMKSTAEWAC
DSLLEHRYLQEDIRNQALARLSTSSAARGSTKLCVSDFEAIGLRPGSWAR
EAIVHGWADWCPDGSSSSRELLFCITGVHF*
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mRNA from alignment at Contig_33:895035..896651+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6004 ID=mRNA_6004|Name=jgi.p|Trimin1|348975|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1617bp|location=Sequence derived from alignment at Contig_33:895035..896651+ (Tribonema minus UTEX_B_3156 )
ATGCAGACGCGCAAGAAGGCCCGCGATGGATCCGCCTCGGCGAGGGTGAT
GCAGCACGCTGGTGAGTACCTGGCTGCATTTTTCCTTGCCACCATAGCGC
CTGTATCTAATCGTAGGCTTTAGCTAGTTCCTAAGCGTGTCTACATAGAA
GCCATGCAGATCTCTAGAGCAGTTACCTCCGCGTTGCAATGTGTCCGAAG
CCCGCTGTTCTGTGCAGCCCGTTGCTCATTGCTTCCTGGCCTATCGAAAG
CGCTGACCTGTTTCACGCCCTGTCTGCCTGCGTTCTCTGTTAGAACTGCT
GCGGTGCATGGTCGAGTATCTGGGCGATGACAAGGACCTCTGCAGCTTCG
CCACTCTATCCAGGACCGCCCGCGACGACAGGATGTGGACCCCGGCACTG
GAGTGCCTGTGTCAGGAGTTTCCGCTGCCGGAGTGCTCTTCATTTGAGAT
CCCAGAAGACGACAACTTGAGCCCGGCAGCACCCCCGGGCTTTGTGCGCC
TAGCCCGACATAAAATCATCAACAGCTCACCAAAATTCAATAGCGACACT
GGAGTGCTGGAGTTTGCGTTCGTTTCCTCGGACCAGCACGTCACAGACGC
CAGAGCTGTGACATGGATGCCAGCGCTGCCGCCGCTGTCATGCATGCCAT
GCAGGTGCGCATGATCTGCTGCCACACACTAGAGTATACTTCTATAGCAT
ATGTATGCCAATGGCACATGGATGATCTGCCCTGCTGCTTGAGCACATGC
TCGCCAGCATGCATACATGAAGATGCAGCTCACCATCTTCTGTCATCATC
ACATGTAGAGCACATGCTGACGCTCGCAAACACGACGACACCATCTCACT
GATGTCATCACCCCACCTCACGATATGCCGCCTCCCCCCATCGCATTCGA
GGTCTGCATCGACAGCGACATGGTAGCCATTTGACTTGCACAGTGCTGCT
CACAGATGCGCCGCAAGCGCCGCATATGCAGCGGTCCGCGCCATAATCAT
GGCTCACTGCAATACACTATCAATTTTGAACCAACACTCATCAGTCTGGC
TCTGTCCGTTAATGTCCCAATGCTTGCCCGTCTTGCTGCTTGGGCAGGTT
CACCACCGACAGCCATGCGGAGTTCAATGCGCACTGCCACTCGTGGCGCC
ACTGTGAGAACCACATGGACCCAAGCGAGCGCGTTTCCGCGCAGTTCGTC
GACCCGCGCCACGCAGAACCCGAATGCTTTGCGCGACTGCCAGCGGTGCG
GCAGTGGGCCGCGCTCCACAAGTACGTGGCCGCAGTGATGCGGAGGCTGC
ACGCGCCGCTGACGAACGCGGGAGGGCGCGCCAACATGAAGTCCACGGCC
GAGTGGGCGTGCGACTCGCTGCTTGAGCACAGATACTTGCAAGAGGACAT
CCGCAACCAGGCGCTGGCGCGGCTCTCAACGAGCAGCGCTGCGCGCGGAA
GCACAAAGCTGTGTGTCAGCGACTTTGAGGCTATAGGCCTGAGGCCGGGG
TCCTGGGCACGCGAAGCGATTGTGCACGGGTGGGCCGACTGGTGCCCAGA
CGGCTCGAGCAGCAGCCGCGAGCTGCTGTTCTGCATCACTGGAGTCCACT
TCTGAGGGTAGTGCGGC
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Coding sequence (CDS) from alignment at Contig_33:895035..896651+

>mRNA_6004 ID=mRNA_6004|Name=jgi.p|Trimin1|348975|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=843bp|location=Sequence derived from alignment at Contig_33:895035..896651+ (Tribonema minus UTEX_B_3156 )
ATGCAGACGCGCAAGAAGGCCCGCGATGGATCCGCCTCGGCGAGGGTGAT
GCAGCACGCTGAACTGCTGCGGTGCATGGTCGAGTATCTGGGCGATGACA
AGGACCTCTGCAGCTTCGCCACTCTATCCAGGACCGCCCGCGACGACAGG
ATGTGGACCCCGGCACTGGAGTGCCTGTGTCAGGAGTTTCCGCTGCCGGA
GTGCTCTTCATTTGAGATCCCAGAAGACGACAACTTGAGCCCGGCAGCAC
CCCCGGGCTTTGTGCGCCTAGCCCGACATAAAATCATCAACAGCTCACCA
AAATTCAATAGCGACACTGGAGTGCTGGAGTTTGCGTTCACCACCGACAG
CCATGCGGAGTTCAATGCGCACTGCCACTCGTGGCGCCACTGTGAGAACC
ACATGGACCCAAGCGAGCGCGTTTCCGCGCAGTTCGTCGACCCGCGCCAC
GCAGAACCCGAATGCTTTGCGCGACTGCCAGCGGTGCGGCAGTGGGCCGC
GCTCCACAAGTACGTGGCCGCAGTGATGCGGAGGCTGCACGCGCCGCTGA
CGAACGCGGGAGGGCGCGCCAACATGAAGTCCACGGCCGAGTGGGCGTGC
GACTCGCTGCTTGAGCACAGATACTTGCAAGAGGACATCCGCAACCAGGC
GCTGGCGCGGCTCTCAACGAGCAGCGCTGCGCGCGGAAGCACAAAGCTGT
GTGTCAGCGACTTTGAGGCTATAGGCCTGAGGCCGGGGTCCTGGGCACGC
GAAGCGATTGTGCACGGGTGGGCCGACTGGTGCCCAGACGGCTCGAGCAG
CAGCCGCGAGCTGCTGTTCTGCATCACTGGAGTCCACTTCTGA
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