Trimin1|348975|estExt_Genemark1.C_Ctg_330118 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|348975
Unique NameTrimin1|348975|estExt_Genemark1.C_Ctg_330118
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length281
Homology
BLAST of jgi.p|Trimin1|348975 vs. uniprot
Match: A0A835YVR1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVR1_9STRA)

HSP 1 Score: 585 bits (1508), Expect = 1.390e-211
Identity = 280/280 (100.00%), Postives = 280/280 (100.00%), Query Frame = 0
Query:    1 MQTRKKARDGSASARVMQHAELLRCMVEYLGDDKDLCSFATLSRTARDDRMWTPALECLCQEFPLPECSSFEIPEDDNLSPAAPPGFVRLARHKIINSSPKFNSDTGVLEFAFTTDSHAEFNAHCHSWRHCENHMDPSERVSAQFVDPRHAEPECFARLPAVRQWAALHKYVAAVMRRLHAPLTNAGGRANMKSTAEWACDSLLEHRYLQEDIRNQALARLSTSSAARGSTKLCVSDFEAIGLRPGSWAREAIVHGWADWCPDGSSSSRELLFCITGVHF 280
            MQTRKKARDGSASARVMQHAELLRCMVEYLGDDKDLCSFATLSRTARDDRMWTPALECLCQEFPLPECSSFEIPEDDNLSPAAPPGFVRLARHKIINSSPKFNSDTGVLEFAFTTDSHAEFNAHCHSWRHCENHMDPSERVSAQFVDPRHAEPECFARLPAVRQWAALHKYVAAVMRRLHAPLTNAGGRANMKSTAEWACDSLLEHRYLQEDIRNQALARLSTSSAARGSTKLCVSDFEAIGLRPGSWAREAIVHGWADWCPDGSSSSRELLFCITGVHF
Sbjct:    1 MQTRKKARDGSASARVMQHAELLRCMVEYLGDDKDLCSFATLSRTARDDRMWTPALECLCQEFPLPECSSFEIPEDDNLSPAAPPGFVRLARHKIINSSPKFNSDTGVLEFAFTTDSHAEFNAHCHSWRHCENHMDPSERVSAQFVDPRHAEPECFARLPAVRQWAALHKYVAAVMRRLHAPLTNAGGRANMKSTAEWACDSLLEHRYLQEDIRNQALARLSTSSAARGSTKLCVSDFEAIGLRPGSWAREAIVHGWADWCPDGSSSSRELLFCITGVHF 280          
BLAST of jgi.p|Trimin1|348975 vs. uniprot
Match: A0A835YTA7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTA7_9STRA)

HSP 1 Score: 294 bits (753), Expect = 9.970e-96
Identity = 158/289 (54.67%), Postives = 190/289 (65.74%), Query Frame = 0
Query:    2 QTRKKARDGSASARVMQHAELLRCMVEYLGDDKDLCSFATLSRTARDDRMWTPALECLCQEFPLPECSSFEIPEDDNLSPAAPPGFVRLARHKIINS----SPKFNSDTGVLEFAFTT---------------------------DSHAEFNAHCHSWRHCENHMDPSERVSAQFVDPRHAEPECFARLPAVRQWAALHKYVAAVMRRLHAPLTNAGGRANMKSTAEWACDSLLEHRYLQEDIRNQALARLSTSSAARGSTKLCVSDFEAIGLRPGSWAREAIVHGWAD 259
            +T KK RDGSASARVMQ AELL+C VEYLGDDKDLCS ATL RTARDD +W+P +  LC EFPLP+ S    P  + +   APPGFVR   H+        SP+FN DTGVLEF F +                           DSHA F AHC SWRHCE+  +PSERV A FVDPRHA+PE FA+LPA RQWAAL ++V+AV+R+L  PL +A  RANM+  A+WA D L +H +L ED   QALA ++TSSAAR  T  C+ D ++ GL PGS+AR AIV GWA+
Sbjct:   59 ETLKKTRDGSASARVMQRAELLQCAVEYLGDDKDLCSAATLCRTARDDTIWSPLVNRLCNEFPLPQYSHV-TPGFNEMDMEAPPGFVRPEMHEHGMDDPYLSPRFNRDTGVLEFGFVSPNEFVLNWYGRSKRACQKCRRSRAGRADSHAAFRAHCRSWRHCESRREPSERVPAAFVDPRHADPERFAQLPAARQWAALRRHVSAVLRQLRVPLADARVRANMERLADWARDELCDHEFLHEDEVQQALAGVTTSSAARACTDFCIGDLKSNGLCPGSYARVAIVDGWAN 346          
BLAST of jgi.p|Trimin1|348975 vs. uniprot
Match: A0A835YLJ0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLJ0_9STRA)

HSP 1 Score: 288 bits (736), Expect = 1.350e-94
Identity = 152/280 (54.29%), Postives = 184/280 (65.71%), Query Frame = 0
Query:    1 MQTRKKARDGSASARVMQHAELLRCMVEYLGDDKDLCSFATLSRTARDDRMWTPALECLCQEFPLPECSSFEIPEDDNLSPAAPPGFVRLARHKIINSSPKFNSDTGVLEFAFTTDSHAEFNAHCHSWRHCENHMDPSERVSAQFVDPRHAEPECFARLPAVRQWAALHKYVAAVMRRLHAPLTNAGGRANMKSTAEWACDSLLEHRYLQEDIRNQALARLSTSSAARGSTKLCVSDFEAIGLRPGSWAREAIVHGWADWCPDGSSSSRELLFCITGVHF 280
            MQTRKKA DGSASARVMQ AELL+C+VEYLGDD+DLCS ATL RTA DD +W+P L  LC EFP PE   +++P          PGF                          TTDSHA F+AHCHSW HCE+  D   R+ A FVDPRHA+PE FA+LPA R+WAAL  ++  V+RRL  PLT+A  RANMK  A+W  D+L +H    ED   QALAR++T S AR  T  C+S+ E+ GL PGS+AR+AIV GWA+W P G+SS+  LL+CITGV F
Sbjct:    1 MQTRKKACDGSASARVMQRAELLQCVVEYLGDDEDLCSAATLCRTASDDSIWSPLLNRLCYEFPQPE---YDLP--------IIPGF--------------------------TTDSHAAFSAHCHSWHHCESRKDLRWRLPAAFVDPRHADPEGFAQLPAARRWAALRMHMTKVLRRLRVPLTDAAVRANMKFLADWVRDALCDHELFHEDEVQQALARVTTRSTARACTGFCISELESNGLCPGSYARDAIVDGWANWGPSGTSSANALLWCITGVDF 243          
BLAST of jgi.p|Trimin1|348975 vs. uniprot
Match: A0A835YVI4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVI4_9STRA)

HSP 1 Score: 232 bits (591), Expect = 1.650e-69
Identity = 134/281 (47.69%), Postives = 163/281 (58.01%), Query Frame = 0
Query:    1 MQTRKKARDGSASARVMQHAELLRCMVEYLGDDKDLCSFATLSRTARDDRMWTPALECLCQEFPLPECSSFEIPEDDNLSPAAPPGFVRLARHKIINSSPKFNSDTGVLEFAFTTDSHAEFNAHCHSWRHCENHMDPSERVSAQFVDPRHAEPECFARLPAVRQWAALHKYVAAVMRRLHAPLTNAGGRANMKSTAEWACDSLLEHRYLQEDIRNQA-----LARLSTSSAARGSTKLCVSDFEAIGLRPGSWAREAIVHGWADWCPDGSSSSRELLFCIT 276
            MQTRKKARDGS SA VMQHAELL+CMVEYLGDDKDLCS A LSR A  D++W+  L+   QEFPL E     IP                                      FTTD++A F  HC SW H EN MDP ERV A+FVDPRH +PE FA+LPAVRQWAALHK+V  VM+  HAP  +   +A + S  + A + L E  + ++D  + A     LA ++TSSA RG  + CV  F   GL P S AR+ +V GWA WC    +S R LL C++
Sbjct:  251 MQTRKKARDGSFSASVMQHAELLQCMVEYLGDDKDLCSEARLSRVACSDKVWSVVLKRFSQEFPLREWEFASIP-------------------------------------GFTTDTYAAFREHCCSWHHRENRMDPRERVPARFVDPRHDDPEGFAQLPAVRQWAALHKHVTTVMQYFHAPPADRRAQATVDSIVQCAQEVLYE--FAEDDELDDAELEHELALITTSSALRGRAEWCVDQFRDHGLWPLSVARDMVVDGWASWCTGEYASKRLLLCCVS 492          
BLAST of jgi.p|Trimin1|348975 vs. uniprot
Match: A0A835Z5U8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5U8_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 6.500e-11
Identity = 46/122 (37.70%), Postives = 57/122 (46.72%), Query Frame = 0
Query:  135 MDPSERVSAQFVDPRHAEPECFARLPAVRQWAALHKYVAAVMRRLHAPLTNAGGRANMKSTAEWACDSLLEHRYLQEDIRNQALARLSTSSAARGSTKLCVSDFEAIGLRPGSWAREAIVHG 256
            M+P +RV ++F +PRHA+PE FA+LPAVRQWAAL  +VA V + L  PL  AG                                     S   GS  L + DF   GLRP   AR  +VHG
Sbjct:    1 MNPPKRVPSRFANPRHADPEGFAQLPAVRQWAALRMHVATVEQYLGLPLAVAG-----------------------------------VGSIMAGSD-LILYDFGRAGLRPEPNARSVVVHG 86          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348975 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835YVR1_9STRA1.390e-211100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YTA7_9STRA9.970e-9654.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YLJ0_9STRA1.350e-9454.29Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YVI4_9STRA1.650e-6947.69Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z5U8_9STRA6.500e-1137.70Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_33contigContig_33:895035..896639 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348975mRNA_6004Tribonema minus UTEX_B_3156 mRNAContig_33 895035..896651 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|348975|estExt_Genemark1.C_Ctg_330118 ID=Trimin1|348975|estExt_Genemark1.C_Ctg_330118|Name=jgi.p|Trimin1|348975|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=281bp
MQTRKKARDGSASARVMQHAELLRCMVEYLGDDKDLCSFATLSRTARDDR
MWTPALECLCQEFPLPECSSFEIPEDDNLSPAAPPGFVRLARHKIINSSP
KFNSDTGVLEFAFTTDSHAEFNAHCHSWRHCENHMDPSERVSAQFVDPRH
AEPECFARLPAVRQWAALHKYVAAVMRRLHAPLTNAGGRANMKSTAEWAC
DSLLEHRYLQEDIRNQALARLSTSSAARGSTKLCVSDFEAIGLRPGSWAR
EAIVHGWADWCPDGSSSSRELLFCITGVHF*
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