Homology
BLAST of jgi.p|Trimin1|348942 vs. uniprot
Match:
A0A836CDA5_9STRA (KH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDA5_9STRA)
HSP 1 Score: 735 bits (1898), Expect = 5.540e-262
Identity = 551/551 (100.00%), Postives = 551/551 (100.00%), Query Frame = 1
Query: 1 MQQGGEPAXXXXXXXXXXXXXQXHKRVNKKKKAPVVSTGPNAGDSPAVSQDPAVQQHQSSAAPINGAKQXXXXXXXXXXXXXXXXXXPXXXXXXXXXXXXXXXXXRRTDDAGGSHRQTDRSPSSEPSDGGAGGLGGVQNSAPHATVGADLPSVGDVSNVEGLFMEAVDIPAVLNEWAREGNAAFVGVLAAVKRQTEVQCLQTRVVAAPLTGPQRKQLVVAAAEAALARAAAMLLTTHVRCQAALLALERRASAERREVHVAYQVEVEKGLRVSFNATTXXXXXXXXXXXXVPEAFVGLLIGKQGNRINAAMEKTGCNIHVEDGGIVTVIGPSAEAVAAARESMDFEQAAVTITPAQLASLSNVRIGELRDNAGCSAISVDDHCDPPKVMLLGTRSAVAAAREMLDTLFLCAEPQQKLQRQQSVFAARMASLXXXXXXXXXXXXXXXXXXXXXXXXXXGGFKPAGGXXXXXXXXXXXXXXXXXGRGGYQRAQMSQTPVLLQRPTGAAAGQQLGRXXXXXXXXXXXXXXXXXXXXXXXXXXGRGANMAGRRRK 1653
MQQGGEPAXXXXXXXXXXXXXQXHKRVNKKKKAPVVSTGPNAGDSPAVSQDPAVQQHQSSAAPINGAKQXXXXXXXXXXXXXXXXXXPXXXXXXXXXXXXXXXXXRRTDDAGGSHRQTDRSPSSEPSDGGAGGLGGVQNSAPHATVGADLPSVGDVSNVEGLFMEAVDIPAVLNEWAREGNAAFVGVLAAVKRQTEVQCLQTRVVAAPLTGPQRKQLVVAAAEAALARAAAMLLTTHVRCQAALLALERRASAERREVHVAYQVEVEKGLRVSFNATTXXXXXXXXXXXXVPEAFVGLLIGKQGNRINAAMEKTGCNIHVEDGGIVTVIGPSAEAVAAARESMDFEQAAVTITPAQLASLSNVRIGELRDNAGCSAISVDDHCDPPKVMLLGTRSAVAAAREMLDTLFLCAEPQQKLQRQQSVFAARMASLXXXXXXXXXXXXXXXXXXXXXXXXXXGGFKPAGGXXXXXXXXXXXXXXXXXGRGGYQRAQMSQTPVLLQRPTGAAAGQQLGRXXXXXXXXXXXXXXXXXXXXXXXXXXGRGANMAGRRRK
Sbjct: 1 MQQGGEPAXXXXXXXXXXXXXQXHKRVNKKKKAPVVSTGPNAGDSPAVSQDPAVQQHQSSAAPINGAKQXXXXXXXXXXXXXXXXXXPXXXXXXXXXXXXXXXXXRRTDDAGGSHRQTDRSPSSEPSDGGAGGLGGVQNSAPHATVGADLPSVGDVSNVEGLFMEAVDIPAVLNEWAREGNAAFVGVLAAVKRQTEVQCLQTRVVAAPLTGPQRKQLVVAAAEAALARAAAMLLTTHVRCQAALLALERRASAERREVHVAYQVEVEKGLRVSFNATTXXXXXXXXXXXXVPEAFVGLLIGKQGNRINAAMEKTGCNIHVEDGGIVTVIGPSAEAVAAARESMDFEQAAVTITPAQLASLSNVRIGELRDNAGCSAISVDDHCDPPKVMLLGTRSAVAAAREMLDTLFLCAEPQQKLQRQQSVFAARMASLXXXXXXXXXXXXXXXXXXXXXXXXXXGGFKPAGGXXXXXXXXXXXXXXXXXGRGGYQRAQMSQTPVLLQRPTGAAAGQQLGRXXXXXXXXXXXXXXXXXXXXXXXXXXGRGANMAGRRRK 551
BLAST of jgi.p|Trimin1|348942 vs. uniprot
Match:
A0A7S3BPL6_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3BPL6_9EUKA)
HSP 1 Score: 62.0 bits (149), Expect = 1.840e-6
Identity = 64/205 (31.22%), Postives = 103/205 (50.24%), Query Frame = 1
Query: 628 TGPQRKQLVVAAAEAALARAAAMLLTTHVRCQAALLALERRASAERREVHVAYQVEVEK---GLRVSFNATTXXXXXXXXXXXXVPEAFVGLLIGKQGNRINAAMEKTGCN-IHVEDGGI-VTVIGPSAEAVAAARESMDFEQAAVTITPAQLASL---SNVRIGELRDNAGCSAISVDDHCDPPKVMLLGTRSAVAAAREMLDT 1218
T P+ QL + +E ++A+A MLL H++ Q+ + R S ER + + E EK G RV F T +GL++GK G I + TG + + V+ G V +IGP+ EAV AARE ++F V + P Q+ L + +L++ + ++VD + +V+L+GT+SAV AA+ +DT
Sbjct: 166 TSPKIAQLRLIGSEKSIAKAK-MLLELHIKHQSEM----HRISNERSMLSTKLEAEREKLSSGYRVEFPITRDV---------------IGLVVGKSGKNIVDTQKATGVDRVEVDPSGPRVVIIGPTQEAVDAARELLEFVTVRVDVKPEQVGWLIGRAGKTFKDLQEKTKVTRLNVDKTMN--QVVLVGTKSAVEAAQLYMDT 348
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348942 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 5.54e-262 / Id = 100.00 Expect = 1.84e-6 / Id = 31.22 Sequence A0A836CDA5_9STRA A0A7S3BPL6_9EUKA back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
ProteomeId Trimin1|348942|estExt_Genemark1.C_Ctg_330048 Hectar predicted targeting category other localisation Ec32 ortholog description K Homology domain, type 1 Ec32 ortholog Ec-16_002550.1 TranscriptId 349264 Track FilteredModels1 ProteinId 348942
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA
>mRNA_5936 ID=mRNA_5936|Name=jgi.p|Trimin1|348942|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1656bp|location=Sequence derived from alignment at Contig_33:324200..328672+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.
ATGCAGCAGGGCGGCGAGCCTGCAGCAGCAGCTAACGGAGGAGGAGCAGG back to top protein sequence of jgi.p|Trimin1|348942
>Trimin1|348942|estExt_Genemark1.C_Ctg_330048 ID=Trimin1|348942|estExt_Genemark1.C_Ctg_330048|Name=jgi.p|Trimin1|348942|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=552bp
MQQGGEPAAAANGGGAGAQKLQQHKRVNKKKKAPVVSTGPNAGDSPAVSQ back to top mRNA from alignment at Contig_33:324200..328672+
Legend: polypeptide exon CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5936 ID=mRNA_5936|Name=jgi.p|Trimin1|348942|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4473bp|location=Sequence derived from alignment at Contig_33:324200..328672+ (Tribonema minus UTEX_B_3156 )ATGCAGCAGGGCGGCGAGCCTGCAGCAGCAGCTAACGGAGGAGGAGCAGG
CGCGCAAAAACTCCAGCAGCACAAGCGCGTCAACAAGAAGAAGAAAGCTC
CCGTCGTCTCAACTGGACCAAACGCTGGCGACAGCCCGGCTGTCTCCCAG
GATCCAGCCGTGCAGCAGCATCAGTCATCGGCAGCCCCTATTAATGGTGC
GAAGCAGCAGCAGCAGCAGCAATATCAACAACAGCACGTCCAGGTAGCGA
AGAAGGCTTCTCCGCAGCACCAACACAAGCCGCAGCAGAAGCCGAGGCAG
CATCTGCAGCAGCAGCGTCGGACCGACGATGCCGGCGGCAGCCACCGACA
GACGGATAGATCGCCCTCTTCTGAGCCCTCAGACGGAGGCGCAGGAGGCC
TAGGAGGCGTCCAAAACTCTGCTCCTCATGCTACCGTGGGCGCGGACCTG
CCGAGCGTCGGGGATGTCAGCAATGTTGAGGGGCTCTTCATGGAGGCAGT
TGACATCCCTGCTGTGCTCAATGAGTGGGCCCGCGAGGGCAACGCGGCGT
TTGTGGGTGTGCTGGCCGCCGTCAAGCGGCAG ACGGAGGTGCAGTGCCTGCAGACGCG
CGTGGTCGCGGCGCCGCTGACCGGCCCGCAGCGCAAGCAGTTGGTTGTGG
CGGCGGCGGAGGCGGCGCTGGCGCGCGCGGCGGCGATGCTGCTGACGACG
CACGTGAGGTGTCAGGCGGCGCTGCTGGCACTGGAGCGGCGTGCGTCTGC
GGAGCGCAGGGAGGTGCACGTGGCGTATCAGGTGGAGGTGGAGAAGGGGC
TGCGCGTGTCCTTCAA TGCAACGACAGTGGAGGTGGAGAAGGGGCTGCGCGTGTCCTTCAA CGTCCCAGAAGCCTTTGTGGGACTGCT
GATAGGCAAGCAGGGCAACCGCATCAATGCCGCCATGGAGAAAACGGGCT
GCAACATACACGTGGAGGACGGCGGAATCGTAACTGTCATTGGGCCGAGC
GCTGAGGCAGTGGCAGCAGCGCGCGAGTCCATGGACTTTGAGCAGGCGGC
GGTGACCATCACGCCCGCGCAGCTCG CGTCGCTGTCA
AACGTGCGCATCGGCGAGCTGCGCGACAACGCGGGCTGCAGCGCCATCTC
CGTGGACGACCACTGCGACCCTCCCAAGGTCATGCTGCTCGGCACGCGCT
CCGCCGTCGCGGCCGCGCGCGAGATGCTCGACACGCTGTTCCTCTGCGCG
GAGCCGCAGCAGAAGCTGCAGCGCCAGCAGAGTGTCTTCGCGGCGCGCAT
GGCGTCGCTGCTGCAGCAGCAGCAGCAGCAGCGCTCGCTGGCGGGGCGGG
GGGCGGGGGCGGCGGGCGGCAGCGCTGCCGCTGCTGCGGGCGGGTTCAAG
CCTGCCGGCGGCGCTGCTGCTGCGGGCGGTTTCAAGCCTGCCGGCGCGGG
GGGGGAGGGGGGGGGGCGGGGCGGATATCAACGCGCGCAGATGTCGCAGA
CGCCGGTGCTGCTGCAGCGGCCTACGGGCGCGGCGGCAGGGCAGCAGCTG
GGGCGGCAGCAGCAGCAGCACGAGCAGCAGCAGCACCGCGGCGCGCCGGC
GGCAGCGGCGTATGATGGCGGCGGCGGCAGCGGGGGCAGGGGGGCAAACA
TGGCGGGGCGCAGGCGGAAGTAG back to top Coding sequence (CDS) from alignment at Contig_33:324200..328672+
>mRNA_5936 ID=mRNA_5936|Name=jgi.p|Trimin1|348942|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1656bp|location=Sequence derived from alignment at Contig_33:324200..328672+ (Tribonema minus UTEX_B_3156 ) back to top