Trimin1|348942|estExt_Genemark1.C_Ctg_330048 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|348942
Unique Name	Trimin1\|348942\|estExt_Genemark1.C_Ctg_330048
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	552

Homology

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BLAST of jgi.p|Trimin1|348942 vs. uniprot
Match: A0A836CDA5_9STRA (KH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDA5_9STRA)

HSP 1 Score: 735 bits (1898), Expect = 5.540e-262
Identity = 551/551 (100.00%), Postives = 551/551 (100.00%), Query Frame = 0

Query:    1 MQQGGEPAXXXXXXXXXXXXXQXHKRVNKKKKAPVVSTGPNAGDSPAVSQDPAVQQHQSSAAPINGAKQXXXXXXXXXXXXXXXXXXPXXXXXXXXXXXXXXXXXRRTDDAGGSHRQTDRSPSSEPSDGGAGGLGGVQNSAPHATVGADLPSVGDVSNVEGLFMEAVDIPAVLNEWAREGNAAFVGVLAAVKRQTEVQCLQTRVVAAPLTGPQRKQLVVAAAEAALARAAAMLLTTHVRCQAALLALERRASAERREVHVAYQVEVEKGLRVSFNATTXXXXXXXXXXXXVPEAFVGLLIGKQGNRINAAMEKTGCNIHVEDGGIVTVIGPSAEAVAAARESMDFEQAAVTITPAQLASLSNVRIGELRDNAGCSAISVDDHCDPPKVMLLGTRSAVAAAREMLDTLFLCAEPQQKLQRQQSVFAARMASLXXXXXXXXXXXXXXXXXXXXXXXXXXGGFKPAGGXXXXXXXXXXXXXXXXXGRGGYQRAQMSQTPVLLQRPTGAAAGQQLGRXXXXXXXXXXXXXXXXXXXXXXXXXXGRGANMAGRRRK 551
            MQQGGEPAXXXXXXXXXXXXXQXHKRVNKKKKAPVVSTGPNAGDSPAVSQDPAVQQHQSSAAPINGAKQXXXXXXXXXXXXXXXXXXPXXXXXXXXXXXXXXXXXRRTDDAGGSHRQTDRSPSSEPSDGGAGGLGGVQNSAPHATVGADLPSVGDVSNVEGLFMEAVDIPAVLNEWAREGNAAFVGVLAAVKRQTEVQCLQTRVVAAPLTGPQRKQLVVAAAEAALARAAAMLLTTHVRCQAALLALERRASAERREVHVAYQVEVEKGLRVSFNATTXXXXXXXXXXXXVPEAFVGLLIGKQGNRINAAMEKTGCNIHVEDGGIVTVIGPSAEAVAAARESMDFEQAAVTITPAQLASLSNVRIGELRDNAGCSAISVDDHCDPPKVMLLGTRSAVAAAREMLDTLFLCAEPQQKLQRQQSVFAARMASLXXXXXXXXXXXXXXXXXXXXXXXXXXGGFKPAGGXXXXXXXXXXXXXXXXXGRGGYQRAQMSQTPVLLQRPTGAAAGQQLGRXXXXXXXXXXXXXXXXXXXXXXXXXXGRGANMAGRRRK
Sbjct:    1 MQQGGEPAXXXXXXXXXXXXXQXHKRVNKKKKAPVVSTGPNAGDSPAVSQDPAVQQHQSSAAPINGAKQXXXXXXXXXXXXXXXXXXPXXXXXXXXXXXXXXXXXRRTDDAGGSHRQTDRSPSSEPSDGGAGGLGGVQNSAPHATVGADLPSVGDVSNVEGLFMEAVDIPAVLNEWAREGNAAFVGVLAAVKRQTEVQCLQTRVVAAPLTGPQRKQLVVAAAEAALARAAAMLLTTHVRCQAALLALERRASAERREVHVAYQVEVEKGLRVSFNATTXXXXXXXXXXXXVPEAFVGLLIGKQGNRINAAMEKTGCNIHVEDGGIVTVIGPSAEAVAAARESMDFEQAAVTITPAQLASLSNVRIGELRDNAGCSAISVDDHCDPPKVMLLGTRSAVAAAREMLDTLFLCAEPQQKLQRQQSVFAARMASLXXXXXXXXXXXXXXXXXXXXXXXXXXGGFKPAGGXXXXXXXXXXXXXXXXXGRGGYQRAQMSQTPVLLQRPTGAAAGQQLGRXXXXXXXXXXXXXXXXXXXXXXXXXXGRGANMAGRRRK 551

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BLAST of jgi.p|Trimin1|348942 vs. uniprot
Match: A0A7S3BPL6_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3BPL6_9EUKA)

HSP 1 Score: 62.0 bits (149), Expect = 1.840e-6
Identity = 64/205 (31.22%), Postives = 103/205 (50.24%), Query Frame = 0

Query:  210 TGPQRKQLVVAAAEAALARAAAMLLTTHVRCQAALLALERRASAERREVHVAYQVEVEK---GLRVSFNATTXXXXXXXXXXXXVPEAFVGLLIGKQGNRINAAMEKTGCN-IHVEDGGI-VTVIGPSAEAVAAARESMDFEQAAVTITPAQLASL---SNVRIGELRDNAGCSAISVDDHCDPPKVMLLGTRSAVAAAREMLDT 406
            T P+  QL +  +E ++A+A  MLL  H++ Q+ +     R S ER  +    + E EK   G RV F  T                  +GL++GK G  I    + TG + + V+  G  V +IGP+ EAV AARE ++F    V + P Q+  L   +     +L++    + ++VD   +  +V+L+GT+SAV AA+  +DT
Sbjct:  166 TSPKIAQLRLIGSEKSIAKAK-MLLELHIKHQSEM----HRISNERSMLSTKLEAEREKLSSGYRVEFPITRDV---------------IGLVVGKSGKNIVDTQKATGVDRVEVDPSGPRVVIIGPTQEAVDAARELLEFVTVRVDVKPEQVGWLIGRAGKTFKDLQEKTKVTRLNVDKTMN--QVVLVGTKSAVEAAQLYMDT 348

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|348942 vs. uniprot

BLAST of jgi.p|Trimin1|348942 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A836CDA5_9STRA	5.540e-262	100.00	KH domain-containing protein n=1 Tax=Tribonema min...	[more]
A0A7S3BPL6_9EUKA	1.840e-6	31.22	Hypothetical protein n=1 Tax=Haptolina ericina Tax...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004087	K Homology domain	SMART	SM00322	kh_6	coord: 283..348 e-value: 2.3E-12 score: 57.1
IPR036612	K Homology domain, type 1 superfamily	GENE3D	3.30.1370.10	K Homology domain, type 1	coord: 286..344 e-value: 2.4E-11 score: 45.5
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 288..342
IPR004088	K Homology domain, type 1	PFAM	PF00013	KH_1	coord: 287..341 e-value: 1.2E-12 score: 47.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..116
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..149
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 480..551
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 507..523
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..89
None	No IPR available	PROSITE	PS50084	KH_TYPE_1	coord: 284..343 score: 14.026051
None	No IPR available	CDD	cd00105	KH-I	coord: 287..341 e-value: 8.92416E-12 score: 58.3403

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_33	contig	Contig_33:324200..328672 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|348942	mRNA_5936	Tribonema minus UTEX_B_3156	mRNA	Contig_33 324200..328672 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|348942|estExt_Genemark1.C_Ctg_330048 ID=Trimin1|348942|estExt_Genemark1.C_Ctg_330048|Name=jgi.p|Trimin1|348942|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=552bp
MQQGGEPAAAANGGGAGAQKLQQHKRVNKKKKAPVVSTGPNAGDSPAVSQ
DPAVQQHQSSAAPINGAKQQQQQQYQQQHVQVAKKASPQHQHKPQQKPRQ
HLQQQRRTDDAGGSHRQTDRSPSSEPSDGGAGGLGGVQNSAPHATVGADL
PSVGDVSNVEGLFMEAVDIPAVLNEWAREGNAAFVGVLAAVKRQTEVQCL
QTRVVAAPLTGPQRKQLVVAAAEAALARAAAMLLTTHVRCQAALLALERR
ASAERREVHVAYQVEVEKGLRVSFNATTVEVEKGLRVSFNVPEAFVGLLI
GKQGNRINAAMEKTGCNIHVEDGGIVTVIGPSAEAVAAARESMDFEQAAV
TITPAQLASLSNVRIGELRDNAGCSAISVDDHCDPPKVMLLGTRSAVAAA
REMLDTLFLCAEPQQKLQRQQSVFAARMASLLQQQQQQRSLAGRGAGAAG
GSAAAAAGGFKPAGGAAAAGGFKPAGAGGEGGGRGGYQRAQMSQTPVLLQ
RPTGAAAGQQLGRQQQQHEQQQHRGAPAAAAYDGGGGSGGRGANMAGRRR
K*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR004087	KH_dom
IPR036612	KH_dom_type_1_sf
IPR004088	KH_dom_type_1