mRNA_15554 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|6109
Unique NamemRNA_15554
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|6109 vs. uniprot
Match: A0A835ZFF1_9STRA (Ubiquitin-conjugating enzyme/RWD-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFF1_9STRA)

HSP 1 Score: 684 bits (1765), Expect = 4.630e-247
Identity = 368/368 (100.00%), Postives = 368/368 (100.00%), Query Frame = 1 
Query:   52 MLPLVSAALGGSSSRRDSGWSRRSVTRHTCILALLAACMLLASSGVGAAAVAAAGDSTYGLRKSIGRAALTGKPGAEECNASDQSSIVLAARRRSQALVXXXXXXXXXXXXXREPKASREWREQRGLMLRGGGKGSLSKFQLFMQIFIPGYGEDAAGDDGDGKAALTSAQPGLAKRVKRFLSALFSGGKKQPTKGAKGGKGKGGSSKDDTVGKHLASKHRPGDANYRIQKELQEFMKNPPEGCQVSVGKSLKVWIITITGAKGTIFEGEKFKLRVGFPENYPLKPPSVYFLQDPPPPEHEHVYTNGDICLSLLGKDWTPNLTASALALSILSMLSSAKEKRRPADNFQNANRRPGQSQDSWIYHDNFS 1155
            MLPLVSAALGGSSSRRDSGWSRRSVTRHTCILALLAACMLLASSGVGAAAVAAAGDSTYGLRKSIGRAALTGKPGAEECNASDQSSIVLAARRRSQALVXXXXXXXXXXXXXREPKASREWREQRGLMLRGGGKGSLSKFQLFMQIFIPGYGEDAAGDDGDGKAALTSAQPGLAKRVKRFLSALFSGGKKQPTKGAKGGKGKGGSSKDDTVGKHLASKHRPGDANYRIQKELQEFMKNPPEGCQVSVGKSLKVWIITITGAKGTIFEGEKFKLRVGFPENYPLKPPSVYFLQDPPPPEHEHVYTNGDICLSLLGKDWTPNLTASALALSILSMLSSAKEKRRPADNFQNANRRPGQSQDSWIYHDNFS
Sbjct:    1 MLPLVSAALGGSSSRRDSGWSRRSVTRHTCILALLAACMLLASSGVGAAAVAAAGDSTYGLRKSIGRAALTGKPGAEECNASDQSSIVLAARRRSQALVXXXXXXXXXXXXXREPKASREWREQRGLMLRGGGKGSLSKFQLFMQIFIPGYGEDAAGDDGDGKAALTSAQPGLAKRVKRFLSALFSGGKKQPTKGAKGGKGKGGSSKDDTVGKHLASKHRPGDANYRIQKELQEFMKNPPEGCQVSVGKSLKVWIITITGAKGTIFEGEKFKLRVGFPENYPLKPPSVYFLQDPPPPEHEHVYTNGDICLSLLGKDWTPNLTASALALSILSMLSSAKEKRRPADNFQNANRRPGQSQDSWIYHDNFS 368
[Close]
BLAST of jgi.p|Trimin1|6109 vs. uniprot
Match: D7FQY7_ECTSI (Ubiquitin-conjugating enzyme n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQY7_ECTSI)

HSP 1 Score: 255 bits (651), Expect = 8.030e-79
Identity = 150/302 (49.67%), Postives = 186/302 (61.59%), Query Frame = 1 
Query:  277 AEECNASDQSSIVLAARRRSQALVXXXXXXXXXXXXXR-EPKASREWREQRGLMLRGGGKGSLSKFQLFMQIFIPGYGEDAAGDDGDGKAALTSAQPGLAKRVKRFLSALFSGGKKQPT---------KGAKGGKGKGGSSKDDTVGKHLASKHRPGDANYRIQKELQEFMKNPPEGCQVSVGKSLKVWIITITGAKGTIFEGEKFKLRVGFPENYPLKPPSVYFLQDPPPPEHEHVYTNGDICLSLLG-KDWTPNLTASALALSILSMLSSAKEKRRPADNFQNANRRPGQSQDSWIYHDN 1149
            A  C     S   LA  RRS AL              + E     +  E   L++RGG     S   LFM++ +PG+  D  GD   G+  L     GL +R+KR +S +F   +  P          K     K   G +K  T   HL   +RPG+ANYRIQKEL+EFM NPP+ C+VSVGK+++VWIITI+GA+GTI+ GEKF+LRV FPE YP KPP+VYFLQ PPPP+H+H+YTNGDICLSLL  +DW PNLT  +LALSILSMLSSAKEKR P DN  +A  RPGQ+Q  WIYHD+
Sbjct:   20 ASTCQGGAPSRAFLAHGRRSSALTSSNARSCNPGPTTQGESGHGEDALETFALVVRGGSDEDPSLTTLFMRVLMPGFRRDKGGD---GELDLEGG--GLMRRLKRLVSGVFRKVRGSPVPITEPKGEAKNVATKKKSKGKAKGATTTSHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVSFPEEYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRLPEDNATHAEARPGQAQ-QWIYHDD 315
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BLAST of jgi.p|Trimin1|6109 vs. uniprot
Match: W7U274_9STRA (Ubiquitin-conjugating enzyme n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U274_9STRA)

HSP 1 Score: 215 bits (548), Expect = 1.870e-63
Identity = 113/200 (56.50%), Postives = 148/200 (74.00%), Query Frame = 1 
Query:  577 RVKRFLSALFSGGK-------KQPT--KGAKGGKGKGGSSKDDTVGKHLASKHRPGDANYRIQKELQEFMKNPPEGCQVSVGKSLKVWIITITGAKGTIFEGEKFKLRVGFPENYPLKPPSVYFLQDPPPPEHEHVYTNGDICLSLLGKDWTPNLTASALALSILSMLSSAKEKRRPADNFQNANRRPGQSQDSWIYHDN 1149
            R+KRFL  L++          K+ T   G+ GG G GG    + + KHL  + R G+AN+R+QKEL+E++ NP E  QV+VG +++VW++T+TGAKGTIF GEK+KL+  FP +YP KPPSVYFLQ  PPP HEHVYTNGDICL+LLG+DW PN+TAS LALSILSMLSSA+EK+ P DN  +A+  PG+ Q +W+YHD+
Sbjct:  116 RIKRFLGLLWNAAGSSAGHDVKRSTIRSGSLGGVG-GGRLGGNRMQKHLGKEFRRGNANFRVQKELREWLANPTENLQVAVGDNIRVWVVTLTGAKGTIFAGEKYKLKFTFPMDYPSKPPSVYFLQ--PPPRHEHVYTNGDICLNLLGRDWRPNMTASMLALSILSMLSSAREKKIPQDNHVHADNPPGKEQANWLYHDD 312
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BLAST of jgi.p|Trimin1|6109 vs. uniprot
Match: A0A7S1TYR4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TYR4_9STRA)

HSP 1 Score: 211 bits (538), Expect = 6.520e-63
Identity = 100/159 (62.89%), Postives = 128/159 (80.50%), Query Frame = 1 
Query:  673 DDTVGKHLASKHRPGDANYRIQKELQEFMKNPPEGCQVSVGKSLKVWIITITGAKGTIFEGEKFKLRVGFPENYPLKPPSVYFLQDPPPPEHEHVYTNGDICLSLLGKDWTPNLTASALALSILSMLSSAKEKRRPADNFQNANRRPGQSQDSWIYHDN 1149
            ++   + L  + + G+  YRIQKEL+EF+ NPP  C+VSVG +++VW +T+TGA+ T++EGE++KLRV FP  YP KPPSVYFL+  PPP+H HVYTNGDICLSLLGKDW PNLTAS+LALSILSMLSSA+EKR P DN Q+A+  PG+ QD W+YHD+
Sbjct:   84 ENKASRQLGKRVKRGNPLYRIQKELREFVDNPPPNCKVSVGDNIRVWTVTLTGAEDTLYEGEEYKLRVTFPTGYPTKPPSVYFLK--PPPKHPHVYTNGDICLSLLGKDWRPNLTASSLALSILSMLSSAREKRLPNDNAQHADSPPGKPQDGWMYHDD 240
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BLAST of jgi.p|Trimin1|6109 vs. uniprot
Match: A0A0G4GVI6_9ALVE (UBC core domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GVI6_9ALVE)

HSP 1 Score: 207 bits (527), Expect = 8.070e-62
Identity = 102/168 (60.71%), Postives = 125/168 (74.40%), Query Frame = 1 
Query:  646 GKGKGGSSKDDTVGKHLASKHRPGDANYRIQKELQEFMKNPPEGCQVSVGKSLKVWIITITGAKGTIFEGEKFKLRVGFPENYPLKPPSVYFLQDPPPPEHEHVYTNGDICLSLLGKDWTPNLTASALALSILSMLSSAKEKRRPADNFQNANRRPGQSQDSWIYHDN 1149
            GK  GG  K D    HL +K  PG+ NYRIQKEL+EF+K+PP  C+VSVG +L+ WIITI G +GT++E E +KL+V FP+ YPL PPSVYFL+  P P H HVYTNGDICL+LLG DW P LT SA+AL+ILSMLSSAKEK+ P DN  +A   PG  Q +W+YHD+
Sbjct:   35 GKKSGGKKKADATSNHLKAKWTPGNPNYRIQKELKEFIKSPPPNCRVSVGSNLRAWIITIKGVEGTLYEKETYKLKVVFPDEYPLVPPSVYFLR--PAPRHPHVYTNGDICLNLLGTDWKPTLTVSAIALAILSMLSSAKEKKIPLDNAAHAEAPPGGQQHNWMYHDD 200
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BLAST of jgi.p|Trimin1|6109 vs. uniprot
Match: A0A7S4RNY0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RNY0_9STRA)

HSP 1 Score: 205 bits (522), Expect = 3.620e-59
Identity = 95/154 (61.69%), Postives = 122/154 (79.22%), Query Frame = 1 
Query:  688 KHLASKHRPGDANYRIQKELQEFMKNPPEGCQVSVGKSLKVWIITITGAKGTIFEGEKFKLRVGFPENYPLKPPSVYFLQDPPPPEHEHVYTNGDICLSLLGKDWTPNLTASALALSILSMLSSAKEKRRPADNFQNANRRPGQSQDSWIYHDN 1149
            KHL++K +    NYRIQKEL+ F+ +PP    V+VGK+++VWI+TITGA  TI+EGEK++LR+ FP NYP  PPSVYFL  PP P+HEHVYTNGDICLSLLGKDW P +T  +LA+SILS+LSSA+EK  P DN  ++  +PG +QD+WIYHD+
Sbjct:  195 KHLSAKLKSNSPNYRIQKELRAFLTSPPPNLSVAVGKNIRVWIVTITGASNTIYEGEKYRLRMSFPSNYPTSPPSVYFL--PPTPKHEHVYTNGDICLSLLGKDWRPTMTGQSLAVSILSLLSSAREKSLPMDNAAHSQNKPGGNQDNWIYHDD 346
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BLAST of jgi.p|Trimin1|6109 vs. uniprot
Match: A0A7S2R2N4_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R2N4_9STRA)

HSP 1 Score: 199 bits (506), Expect = 1.390e-58
Identity = 91/153 (59.48%), Postives = 120/153 (78.43%), Query Frame = 1 
Query:  691 HLASKHRPGDANYRIQKELQEFMKNPPEGCQVSVGKSLKVWIITITGAKGTIFEGEKFKLRVGFPENYPLKPPSVYFLQDPPPPEHEHVYTNGDICLSLLGKDWTPNLTASALALSILSMLSSAKEKRRPADNFQNANRRPGQSQDSWIYHDN 1149
            H+A + +  + NYRIQ+EL+EF+K+PP   +V+VGK+++VWIIT+ GAK TI++G+KF+LRV FP +YP  PPSVYFLQ  P P HEHVYTNGDICLSLLGKDW P +TA ++A+SILS+LS A+ K  P DN +N   +PG  QD W+YHD+
Sbjct:   57 HIAKELKSNNPNYRIQRELKEFLKSPPPNLKVNVGKNIRVWIITLIGAKNTIYDGDKFRLRVQFPADYPTSPPSVYFLQ--PTPRHEHVYTNGDICLSLLGKDWRPTMTAQSIAMSILSILSGAQRKSLPMDNARNCLNKPGAKQDDWVYHDD 207
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BLAST of jgi.p|Trimin1|6109 vs. uniprot
Match: A0A0G4GQN8_VITBC (UBC core domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GQN8_VITBC)

HSP 1 Score: 198 bits (504), Expect = 2.510e-58
Identity = 89/153 (58.17%), Postives = 120/153 (78.43%), Query Frame = 1 
Query:  691 HLASKHRPGDANYRIQKELQEFMKNPPEGCQVSVGKSLKVWIITITGAKGTIFEGEKFKLRVGFPENYPLKPPSVYFLQDPPPPEHEHVYTNGDICLSLLGKDWTPNLTASALALSILSMLSSAKEKRRPADNFQNANRRPGQSQDSWIYHDN 1149
            HL    RPG  NYRIQKEL++F+  PP+ C+++VG +++VWIIT+TG +GT++EGEK++L++ FP  YPLKPP +YFLQ  P P H HVY+NGDICL+LLG DW P LT +++ALSILSMLSSAKEK+ P DN  +A+ + G  Q +W+YHD+
Sbjct:   54 HLRRSFRPGHVNYRIQKELKDFLTTPPDHCEIAVGSNIRVWIITLTGVEGTLYEGEKYRLKIVFPPEYPLKPPIIYFLQ--PTPRHPHVYSNGDICLNLLGTDWKPTLTVASVALSILSMLSSAKEKKLPLDNASHADLKAGGQQHNWMYHDD 204
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BLAST of jgi.p|Trimin1|6109 vs. uniprot
Match: A0A7S2L3M3_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2L3M3_9STRA)

HSP 1 Score: 200 bits (508), Expect = 4.650e-57
Identity = 96/160 (60.00%), Postives = 120/160 (75.00%), Query Frame = 1 
Query:  670 KDDTVGKHLASKHRPGDANYRIQKELQEFMKNPPEGCQVSVGKSLKVWIITITGAKGTIFEGEKFKLRVGFPENYPLKPPSVYFLQDPPPPEHEHVYTNGDICLSLLGKDWTPNLTASALALSILSMLSSAKEKRRPADNFQNANRRPGQSQDSWIYHDN 1149
            K + V  HL S     + NYRIQ+EL+ F+K+PPE   V VGK+++VWIIT+TGA G+I+EGEK++L V FP+NYP  PPSVYFL   P P HEHVYTNGDICLSLLGKDW P +TA ++ALSILS+LSSA  K  P DN  +A  +PG +QD W+YHD+
Sbjct:  192 KSEAVDFHLKSSLSQNNPNYRIQQELKAFIKSPPENLSVKVGKNIRVWIITLTGATGSIYEGEKYRLHVKFPKNYPAAPPSVYFLN--PTPRHEHVYTNGDICLSLLGKDWRPTMTAQSIALSILSILSSASHKALPQDNAAHAGAQPGLAQDDWVYHDD 349
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BLAST of jgi.p|Trimin1|6109 vs. uniprot
Match: B7FUS1_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FUS1_PHATC)

HSP 1 Score: 191 bits (484), Expect = 7.460e-56
Identity = 90/153 (58.82%), Postives = 115/153 (75.16%), Query Frame = 1 
Query:  691 HLASKHRPGDANYRIQKELQEFMKNPPEGCQVSVGKSLKVWIITITGAKGTIFEGEKFKLRVGFPENYPLKPPSVYFLQDPPPPEHEHVYTNGDICLSLLGKDWTPNLTASALALSILSMLSSAKEKRRPADNFQNANRRPGQSQDSWIYHDN 1149
            HL +K +    NYRIQ+EL+ F+ +PP    V VGK+L+VWI++I GAKGT++EGE FKLR+ FP  YP  PPSVYFL  P  P HEHVYTNGDICLSLLGKDW P +TA ++A+SILS+LSSA+ K  P DN ++A  +PG+ Q  W+YHD+
Sbjct:   16 HLQAKLKSTSPNYRIQRELKAFLSDPPSNLSVKVGKNLRVWIVSIEGAKGTVYEGEIFKLRISFPPQYPTVPPSVYFLP-PSIPVHEHVYTNGDICLSLLGKDWRPTMTAQSIAVSILSILSSAQSKSLPMDNARHAQNKPGEYQKDWVYHDD 167
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|6109 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZFF1_9STRA4.630e-247100.00Ubiquitin-conjugating enzyme/RWD-like protein n=1 ... [more]
D7FQY7_ECTSI8.030e-7949.67Ubiquitin-conjugating enzyme n=1 Tax=Ectocarpus si... [more]
W7U274_9STRA1.870e-6356.50Ubiquitin-conjugating enzyme n=2 Tax=Monodopsidace... [more]
A0A7S1TYR4_9STRA6.520e-6362.89Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A0G4GVI6_9ALVE8.070e-6260.71UBC core domain-containing protein n=1 Tax=Chromer... [more]
A0A7S4RNY0_9STRA3.620e-5961.69Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2R2N4_9STRA1.390e-5859.48Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A0G4GQN8_VITBC2.510e-5858.17UBC core domain-containing protein n=1 Tax=Vitrell... [more]
A0A7S2L3M3_9STRA4.650e-5760.00Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
B7FUS1_PHATC7.460e-5658.82Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_108contigContig_108:175530..181319 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|6109|CE6108_193
BRITEko00000,ko00001,ko01000,ko03012,ko04121,ko04131
KEGG rclassRC00064,RC00141
KEGG ReactionR04112
KEGG Pathwayko04120,ko04138,ko05146,map04120,map04138,map05146
KEGG koko:K01446,ko:K10688,ko:K13963,ko:K19589,ko:K20182
EC2.1.1.297,2.3.2.25
GOsGO:0000209,GO:0001101,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006464,GO:0006508,GO:0006511,GO:0006513,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009719,GO:0009725,GO:0009739,GO:0009987,GO:0010033,GO:0010498,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0030163,GO:0031625,GO:0032446,GO:0033993,GO:0036211,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044424,GO:0044464,GO:0050896,GO:0051603,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901700
Preferred nameUBC17
Descriptionprotein polyubiquitination
COG categoryO
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5078@1|root,KOG0427@2759|Eukaryota
Evalue4.91e-80
Seed ortholog2880.D7FQY7
Hectar predicted targeting categorysignal peptide
TranscriptId6431
TrackFilteredModels1
ProteinId6109
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|6109gene_15554Tribonema minus UTEX_B_3156 geneContig_108 175530..181319 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|6109Trimin1|6109|CE6108_193Tribonema minus UTEX_B_3156 polypeptideContig_108 175605..181268 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15554_9exon_15554_9Tribonema minus UTEX_B_3156 exonContig_108 175530..175679 -
exon_15554_8exon_15554_8Tribonema minus UTEX_B_3156 exonContig_108 176151..176304 -
exon_15554_7exon_15554_7Tribonema minus UTEX_B_3156 exonContig_108 177133..177189 -
exon_15554_6exon_15554_6Tribonema minus UTEX_B_3156 exonContig_108 177915..178003 -
exon_15554_5exon_15554_5Tribonema minus UTEX_B_3156 exonContig_108 178553..178604 -
exon_15554_4exon_15554_4Tribonema minus UTEX_B_3156 exonContig_108 179195..179316 -
exon_15554_3exon_15554_3Tribonema minus UTEX_B_3156 exonContig_108 179814..179893 -
exon_15554_2exon_15554_2Tribonema minus UTEX_B_3156 exonContig_108 180402..180625 -
exon_15554_1exon_15554_1Tribonema minus UTEX_B_3156 exonContig_108 181015..181319 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_15554UTR3_15554Tribonema minus UTEX_B_3156 three_prime_UTRContig_108 175530..175604 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15554CDS_15554Tribonema minus UTEX_B_3156 CDSContig_108 181015..181268 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_15554UTR5_15554Tribonema minus UTEX_B_3156 five_prime_UTRContig_108 181269..181319 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15554 ID=mRNA_15554|Name=jgi.p|Trimin1|6109|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1233bp|location=Sequence derived from alignment at Contig_108:175530..181319- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AAGACCTGCACCTGCAGCGAGATCTTGGGTTTGAAGGGCGCGGCGCAAGC
GATGCTGCCGCTTGTCAGTGCGGCACTCGGCGGCAGCAGCAGCCGCAGAG
ACAGTGGCTGGTCACGGCGGTCGGTCACAAGGCACACATGCATCCTGGCT
CTGTTGGCAGCATGCATGCTGCTTGCATCCAGTGGCGTAGGAGCTGCTGC
GGTTGCTGCTGCGGGTGACAGCACCTATGGCCTTCGCAAATCTATTGGGC
GTGCAGCGTTAACAGGGAAGCCAGGGGCGGAGGAGTGCAACGCATCGGAC
CAAAGTTCCATTGTGCTGGCGGCACGAAGGCGTAGCCAAGCACTAGTTTC
GGAACGGCGCGCCAAAGGAGTGCTCTCACAACGACTACGGGAACCCAAGG
CATCACGGGAATGGAGGGAGCAGCGAGGTCTGATGCTGAGGGGAGGGGGC
AAGGGCTCGCTGTCAAAATTCCAGCTGTTCATGCAGATATTCATTCCTGG
ATATGGCGAAGACGCAGCTGGCGATGATGGCGATGGCAAGGCAGCGCTCA
CCTCTGCACAGCCGGGGCTTGCAAAGCGCGTCAAGCGCTTCCTCTCTGCG
CTCTTCTCGGGGGGCAAGAAGCAGCCGACCAAAGGAGCGAAGGGGGGCAA
AGGCAAGGGGGGCAGCAGCAAAGACGACACTGTGGGCAAGCACCTGGCTT
CAAAGCACAGGCCGGGGGATGCCAACTACCGGATTCAAAAGGAGCTCCAG
GAGTTCATGAAGAACCCACCTGAGGGGTGTCAGGTTTCAGTGGGCAAGAG
TTTGAAGGTGTGGATCATTACCATCACAGGGGCGAAGGGCACCATATTTG
AGGGAGAGAAATTCAAGCTCAGGGTGGGATTCCCAGAAAACTACCCGCTC
AAGCCCCCAAGCGTCTACTTCCTGCAAGACCCTCCGCCGCCAGAGCACGA
GCACGTGTACACCAACGGCGACATCTGCCTGTCGCTTCTGGGCAAAGACT
GGACGCCCAACCTCACTGCGTCAGCGCTCGCCCTCAGCATCTTGAGCATG
CTCTCAAGCGCCAAGGAGAAACGCCGACCAGCGGACAACTTCCAAAACGC
AAACCGACGTCCTGGGCAAAGCCAGGACTCCTGGATCTACCATGACAACT
TTTCGTGAAGGGATCATACACAAGTCATGCCAACGAAGGTTGTGTGTGGG
CTACATGTCAACAAAAGCCAGCATTAAAGATCG
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protein sequence of jgi.p|Trimin1|6109

>Trimin1|6109|CE6108_193 ID=Trimin1|6109|CE6108_193|Name=jgi.p|Trimin1|6109|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=369bp
MLPLVSAALGGSSSRRDSGWSRRSVTRHTCILALLAACMLLASSGVGAAA
VAAAGDSTYGLRKSIGRAALTGKPGAEECNASDQSSIVLAARRRSQALVS
ERRAKGVLSQRLREPKASREWREQRGLMLRGGGKGSLSKFQLFMQIFIPG
YGEDAAGDDGDGKAALTSAQPGLAKRVKRFLSALFSGGKKQPTKGAKGGK
GKGGSSKDDTVGKHLASKHRPGDANYRIQKELQEFMKNPPEGCQVSVGKS
LKVWIITITGAKGTIFEGEKFKLRVGFPENYPLKPPSVYFLQDPPPPEHE
HVYTNGDICLSLLGKDWTPNLTASALALSILSMLSSAKEKRRPADNFQNA
NRRPGQSQDSWIYHDNFS*
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mRNA from alignment at Contig_108:175530..181319-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15554 ID=mRNA_15554|Name=jgi.p|Trimin1|6109|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5790bp|location=Sequence derived from alignment at Contig_108:175530..181319- (Tribonema minus UTEX_B_3156 )
AAGACCTGCACCTGCAGCGAGATCTTGGGTTTGAAGGGCGCGGCGCAAGC
GATGCTGCCGCTTGTCAGTGCGGCACTCGGCGGCAGCAGCAGCCGCAGAG
ACAGTGGCTGGTCACGGCGGTCGGTCACAAGGCACACATGCATCCTGGCT
CTGTTGGCAGCATGCATGCTGCTTGCATCCAGTGGCGTAGGAGCTGCTGC
GGTTGCTGCTGCGGGTGACAGCACCTATGGCCTTCGCAAATCTATTGGGC
GTGCAGCGTTAACAGGGAAGCCAGGGGCGGAGGAGTGCAACGCATCGGAC
CAAAGGTGTGTGACATGATGTGAAGTAATCTAAGCACAACTGAAGGAGCA
GCCCATCTTCTTAACAGCTGCTGATACCTCAAGCTTGTTGTTTCTCATAG
AGGCGCTTGCAACAAGGAATGCTTCATGACAATGTAGGTGCAGACCGTCT
TGGCGACAAGCAAAAGTACGGCCACAAGCTGTAATGGAGTCATGTTGGTC
GATTATCGATTCTTTTGCCCTCTCATGCTGAGAGGGGATGCTGCAACCTG
ACTCAGCAAGCAGTGAACTTCCTGGCTTATATATCTCGATACTTGGCAGA
ATTTGGCTGTGCAAGGATGCTGAAGTTTAGCACTGAACAGGATATTTCGA
CTGTCTCACACGGTCCCTCATGATGCCACTGATTCGGATTGCAGTTCCAT
TGTGCTGGCGGCACGAAGGCGTAGCCAAGCACTAGTTTCGGAACGGCGCG
CCAAAGGAGTGCTCTCACAACGACTACGGGAACCCAAGGCATCACGGGAA
TGGAGGGAGCAGCGAGGTCTGATGCTGAGGGGAGGGGGCAAGGGCTCGCT
GTCAAAATTCCAGCTGTTCATGCAGATATTCATTCCTGGATATGGCGAAG
ACGCAGCTGGCGATGATGGTGAGCTGCCGGCCTTCGTACTTCAAGTATGA
CGTTCATGGTGACCGTGCTTCATCACAAGCTGGTCAGCTTGGATATTGTG
GCTATGGTTGATGAAGTTTATTGATGTTCACGGCAGCTTTGTGCATCATG
TTTCAGCCACTGCAAATACTGCTTCAGGCAGAAATAGTGCTTGCCGCTGC
TGAGCGTTGAGCAGTTGCGCTGTGTTTTTTCCGTTGTCTTGCGTTCTCTG
ACAGTAGTTCATGTACATCTGCACTACACCGCAGCATGGTGATCCTCTGC
TAGGACTTGCGTCGGATTGCTGAAGTGTGCTGCCGCTGCGTCGTCGCTGC
ACGTCCTTGATAATCCATTCAAATGCACATTTCTCTTTCTCTGCCATGTC
TCATGTACCCTGGCAGTTTGCCACCTGCTGCTGCAGTATGTATACTATCA
CAGTTGTGTAAATACATGTGTCCGTTGCTGAAGCGTGCTGCCGCGCTGTA
ACTGCCGCGTAACTGCCGTGTAACAGGCGATGGCAAGGCAGCGCTCACCT
CTGCACAGCCGGGGCTTGCAAAGCGCGTCAAGCGCTTCCTCTCTGCGCTC
TTCTCGGTGAGCAACAATGATATGCAAGCATATATGCTCCCTGAATGTTG
TCAGCATCTCAGCAATAGCCATTGTGCATGCATCAGAAACAGACAGACAG
GTGCACGAAGGAATGATGAATTTGTCGCATCAGTGGGTATCAAATTGGGC
AGTGTAGTTATTGTTGAAGTTAATGCGGCAGGCAGTGCACAATGCCATAT
TCTCATGATGCAAGCAGAACCCTGCAGTACCCGGAGGAAGCTGGTCGTGC
CGCGTGCAAAATCATCTAAGGATGCATGTATGCAAGTATGGCTAATTGCA
TGCAGTCGGTGGAAGTGGACACAGAGCGCCACAGCGCAGGGGCGCACATT
GCCCATGTTTTTACGACGGTTCTTCATTGTTTTGTCCTTCAATAGTGTTT
TCCATGTCGGAACAGTGAGAGCAACAGCTATATCATACTTCTCCAAGTGT
GCATCGATGAATTCACAAACACTGCTTTCTGTCGCAATTGTGTTTGTTGG
AAGGGGGGCAAGAAGCAGCCGACCAAAGGAGCGAAGGGGGGCAAAGGCAA
GGGGGGCAGCAGCAAAGACGACACTGTGGGCAAGCACCTGGCTTCAAAGC
ACAGGCCGGGGGATGCCAACTACCGGTGAGCTGCTGTTACTGTTGCTGAG
CGTTGATGCTTTCGCAGTTTGATGGGTTAGATTCAAGACAGTGCTGGCGA
TCTAAAACTGTTGTATGAAGGGAGGACATTTAGCTGCAGGCGCTGAGGCC
GCTCGGTGAAATGACGGCATGACGGATATACGATTATTTTTTGTTTTGGC
GGGCAGTTCACATGAACCGGTAAAGTGAGCCTATGAGTGACTGCTTCGCC
TCAGTCGTGCACACACGGCCAACGGTCGCGTTGATATTGCTGTGATGTGT
CATTAAGGGTAGTATGGGTCCAACAATCCGCATCAACTCATTATGTGTTG
GTGAAGACGTCAAGGAGCATTAATCTGCTTCCATACTGGTAATAAGTCTG
CGGTCATCAGCTGTACATGGGTCGTTCCACAGTCAGGGCAGCCAGGCAGG
TCGTGCAGGCTTCAAACGCAGGCAATACTTCATCTTTGAAGTACCATGTA
TATGTGGTGGAGCAGCTGGCAAATTGTTAACATACTTCAACATGCATTTT
TGTAAAATGACAAGAGCACCACGCGTCTGTCTTACGCTGTGACACTGCTG
TTATTGTGCACCCAGGATTCAAAAGGAGCTCCAGGAGTTCATGAAGAACC
CACCTGAGGGGTGTCAGGTGTGTATGTACTTCTAGATTTGAGAAGGCAGT
TAATTAGCCAGTGGCAACTGCTCAAATGGTTAGAGCCGTCCCGCACTGCA
TGACTGCCAGTATCCACACCAGGATGGCATCTTTGAGCAACAGGGTTATC
AGCGCGGAAAGAGCAAACCTTTTGGATCAACATCAATGCTTGGTGAAGTT
AATGCAGCGTCGCCTTCTTCCCATTTGTTGCCTCACTTCATTGCCTGGGG
GGGTAGCTCCAGTTTGTGCATGATTGTAACTACGTGATGCGGGTAAGTCA
CTTCCACTGAGGGTGCTGGCGCAGCTGCACATTCCCAAGTCTACATCCAG
GGGGTATGCATATATGCCTCACTGCTCTTCACAAGGGGGCAGATAGGGGT
ATGTGCTCTGCACATGCTCTGAGCAACAAAGATGCTTGCGCGTTTGCGTG
GTTCAGAGCGCTATGCTTGCATAGTTGACGGTTTTTGCTAGCTGTGCGCA
TGCGCTTGCATGCTTCAGTGCTCGCACTACTAATTCATGAACTTGAATGT
GCCCTTCACGCTACAGGTTTCAGTGGGCAAGAGTTTGAAGGTGTGGATCA
TTACCATCACAGGGGCGAAGGGCACCATATTTGAGGGAGAGAAATTCAAG
CTCAGGTGAATGGGTGCGCCTTTTGCACTTGCGAAATACCGTATATGTAC
ACTCGTTGTTATGCCTGATATGCCACCTCTGTACAACTACTGTTCAAAGC
ACATGTACTCTATCGCCGCTTGTTTTGATTCATATCAAAAACAAAGAAGC
TGTGGCTTACAACGCCTGATGTGCCACCGCTGTGCACTGGTGTGAAGCAC
ATGTACGGCATTGCCGCTCATTGTCATTGCTATCAGTTACAGAGGAGCTG
TGCACGATCCTGTGCGGCAGTTTTGCATGTAAAGTACGCTGCCCAACACG
TTGTGAACAGTATTGGGTTTAGGATCAATTAAGCAAGCCAGGAAAAAGCT
TGCACCACACTACTCAGTGTGTGTTTGTCTCATGCGTAGTAGTGTTGCAT
TCCTGAGCAGGTCATAGCAAATGGTTGCGGTTGGTCCATCACGTGTAATA
CACTGCTAATACACAATTAGCTCGCATGTATTTGCCATCCCAAGCTTCAG
TGCGAGGGCGATCTGGCAATTGCACACACTTGAAGTTTACGTACTTCGAA
GTACATGAAATGACAATCTGTAGTCAGCTTCTCTGGGATGCCAATTGCCA
ATAGAAGGAGGAATGCACCTGCGTATCTTCCTCAGGCATGTTTCACCATT
GTGCCGCGGCTTTTGCAATCAGTAAAGCTGTCCTGCAGTTTCATCCACGC
ATCGTGCGTCTGTGTTCGTGTCGTCTGCAGGGTGGGATTCCCAGAAAACT
ACCCGCTCAAGCCCCCAAGCGTCTACTTCCTGCAAGAGTGAGTGGTGCTG
GTATTGACTGAGTTGAACCTTTCGCATTCTCTTGCGCAATGCATTGCAGC
AGTGCCGTACTTCGCATTGAGAGCAAACTTGAAGGGATTTTACGCCACAG
GTGGTGTTTTGGAACAGAAGGAGCGCATATTTGCAATGTCAAGGCACCGT
AAGCTAGCTGCGTAGTGGTAGGACAAGTCCAGTTGCGTCCCACTTCATGA
CAATTGCGCCTGCTGCCTAGTACTTCGAAGTACGCCTGTGCTGCTGTCAG
AAGCTGCTGTTCACACTTGCGGTGGTCTTGCATGACGTTTTGATATTGAA
TCCTGCTCCTGAGTCCGTTTCCCTTCACTGTATGTTCATGTGTGGGTTGT
GCATAGCACGCAGCATACCGCTAACACTTAAATGCCGCCAGCACATGGGA
TTGAGTCTGTAGAGACACTGTCTGTTGGTCGCTGCTGCACTCTGAGTCTG
CTGCGCTGCCTGTCCATTAAGCACACTATTGCTTCTTGTGCTATGGCACG
CTGCAATCACCATGCCTCCGCAGTGCACACTCCTGCTACCCATCCGCCAT
CAGAGCAATAGTATGCGCAACGCCAAAATGGTCTGCTTGTCAGTGGCCTG
AAGATCGAGCCGTCACACACACACTCCACAGTTCTTGCGTGTGCTGACTC
TGGTCAATGACAATACATGCCTACCCATGTGTACACTTCTGCCAGCCCGC
CGCCGCCAGAGCACGAGCACGTGTACACCAAAATCAAGCTACTATCACAT
AAGTTCTACACGAGCTGACTCTGGTCAATAACAATACCCACCTACCTTGC
ATACGCTGTTGCCAGCCCTCCGCCGCCAGAGCACGAGCACGTGTACACCA
ACGGCGACATCTGCCTGTCGCTTCTGGGCAAAGACTGGACGCCCAACCTC
ACTGCGTCAGCGCTCGCCCTCAGCATCTTGAGCATGCTCTCAAGCGCCAA
GGAGAAACGCCGACCAGCGGTGAGTGCATTGATTCTTGCACCAGACTTGA
AGTGCCTACATGAACACCAGACTTCAAGTGCCCGCACAGACAATGAATGT
CTTTCCTGAACCCACTTGTCAGGCCCTGCTTGAAGTGGTGTCGGGGCTCG
CAGTCTCAGCTCTCGCGTTTGCAGTGTTGGTCAGTTGCTACTTCACGGCA
TGCTCAAAATGGAAACAAGTGCGATTGTGTTTCAAGTCGAAGTGTTGAAT
GCCGGGCGCAGCAGCAATGCCTGTGGTCGCCGGTTATGTGGCGCAATTTC
AAATGACGGCATGGGAATCTATGCGTACGCCACTTACACATCTCGTCGCT
CGTTGAAGATTAAAATGCTTTCAAGTCGCTGCTACTCCTCTCTGTGCAGC
ATCACAACTGACCATTGCAGCCTACCTACAGAGCATTGATGCACATCACT
TGACAGCTGCTTGTGTGCTACGTGTTTGTTTCATGTGCAGGACAACTTCC
AAAACGCAAACCGACGTCCTGGGCAAAGCCAGGACTCCTGGATCTACCAT
GACAACTTTTCGTGAAGGGATCATACACAAGTCATGCCAACGAAGGTTGT
GTGTGGGCTACATGTCAACAAAAGCCAGCATTAAAGATCG
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Coding sequence (CDS) from alignment at Contig_108:175530..181319-

>mRNA_15554 ID=mRNA_15554|Name=jgi.p|Trimin1|6109|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1107bp|location=Sequence derived from alignment at Contig_108:175530..181319- (Tribonema minus UTEX_B_3156 )
ATGCTGCCGCTTGTCAGTGCGGCACTCGGCGGCAGCAGCAGCCGCAGAGA
CAGTGGCTGGTCACGGCGGTCGGTCACAAGGCACACATGCATCCTGGCTC
TGTTGGCAGCATGCATGCTGCTTGCATCCAGTGGCGTAGGAGCTGCTGCG
GTTGCTGCTGCGGGTGACAGCACCTATGGCCTTCGCAAATCTATTGGGCG
TGCAGCGTTAACAGGGAAGCCAGGGGCGGAGGAGTGCAACGCATCGGACC
AAAGTTCCATTGTGCTGGCGGCACGAAGGCGTAGCCAAGCACTAGTTTCG
GAACGGCGCGCCAAAGGAGTGCTCTCACAACGACTACGGGAACCCAAGGC
ATCACGGGAATGGAGGGAGCAGCGAGGTCTGATGCTGAGGGGAGGGGGCA
AGGGCTCGCTGTCAAAATTCCAGCTGTTCATGCAGATATTCATTCCTGGA
TATGGCGAAGACGCAGCTGGCGATGATGGCGATGGCAAGGCAGCGCTCAC
CTCTGCACAGCCGGGGCTTGCAAAGCGCGTCAAGCGCTTCCTCTCTGCGC
TCTTCTCGGGGGGCAAGAAGCAGCCGACCAAAGGAGCGAAGGGGGGCAAA
GGCAAGGGGGGCAGCAGCAAAGACGACACTGTGGGCAAGCACCTGGCTTC
AAAGCACAGGCCGGGGGATGCCAACTACCGGATTCAAAAGGAGCTCCAGG
AGTTCATGAAGAACCCACCTGAGGGGTGTCAGGTTTCAGTGGGCAAGAGT
TTGAAGGTGTGGATCATTACCATCACAGGGGCGAAGGGCACCATATTTGA
GGGAGAGAAATTCAAGCTCAGGGTGGGATTCCCAGAAAACTACCCGCTCA
AGCCCCCAAGCGTCTACTTCCTGCAAGACCCTCCGCCGCCAGAGCACGAG
CACGTGTACACCAACGGCGACATCTGCCTGTCGCTTCTGGGCAAAGACTG
GACGCCCAACCTCACTGCGTCAGCGCTCGCCCTCAGCATCTTGAGCATGC
TCTCAAGCGCCAAGGAGAAACGCCGACCAGCGGACAACTTCCAAAACGCA
AACCGACGTCCTGGGCAAAGCCAGGACTCCTGGATCTACCATGACAACTT
TTCGTGA
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