Trimin1|352052|estExt_Genemark1.C_Ctg_1070026 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|352052
Unique NameTrimin1|352052|estExt_Genemark1.C_Ctg_1070026
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length214
Homology
BLAST of jgi.p|Trimin1|352052 vs. uniprot
Match: A0A835ZE73_9STRA (XPA_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE73_9STRA)

HSP 1 Score: 361 bits (926), Expect = 4.230e-125
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0
Query:    1 MEKLAARKKQQSEQQQVXXXXXXXXXXXXXXXSRKRPSPSHAPLPDAKRAGGGDAETVSGGRVCESCGARDTDDPRGTLDRKLLEAFDVAVCRNCKDSKEAYELMTKADVQKLFLLPEGTIRVLKYVERENPRNKGWTPMRLYLHKDARVWALKRWSTVEALEEERKRRDAKKWEESVKRTKGVFSSAXXXXXXXXXGASRGRRKAALGPSII 213
            MEKLAARKKQQSEQQQVXXXXXXXXXXXXXXXSRKRPSPSHAPLPDAKRAGGGDAETVSGGRVCESCGARDTDDPRGTLDRKLLEAFDVAVCRNCKDSKEAYELMTKADVQKLFLLPEGTIRVLKYVERENPRNKGWTPMRLYLHKDARVWALKRWSTVEALEEERKRRDAKKWEESVKRTKGVFSSAXXXXXXXXXGASRGRRKAALGPSII
Sbjct:    1 MEKLAARKKQQSEQQQVXXXXXXXXXXXXXXXSRKRPSPSHAPLPDAKRAGGGDAETVSGGRVCESCGARDTDDPRGTLDRKLLEAFDVAVCRNCKDSKEAYELMTKADVQKLFLLPEGTIRVLKYVERENPRNKGWTPMRLYLHKDARVWALKRWSTVEALEEERKRRDAKKWEESVKRTKGVFSSAXXXXXXXXXGASRGRRKAALGPSII 213          
BLAST of jgi.p|Trimin1|352052 vs. uniprot
Match: A0A6H5KUI3_9PHAE (XPA_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUI3_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 3.700e-30
Identity = 57/123 (46.34%), Postives = 88/123 (71.54%), Query Frame = 0
Query:   63 VCESCGARDTDDPRGTLDRKLLEAFDVAVCRNCKDSKEAYELMTKADVQKLFLLPEGTIRVLKYVERENPRNKGWTPMRLYLHKDARVWALKRWSTVEALEEERKRRDAKKWEESVKRTKGVF 185
             CE CG  + DD R  +D++LLEAF ++VCR CK S+E ++ +T  DV+  +LLP+GTI VLK+VER+NP +  WT M+LYL ++   ++ +RW + + L  ER+RR++ K++ S+ RTKG+F
Sbjct:  171 ACEGCGG-EQDDAR--MDKELLEAFGISVCRTCKMSREEFQYVTTKDVKDTYLLPQGTIAVLKFVERDNPHHSSWTKMKLYLRREVVAYSYRRWGSEDGLAAERRRRESLKYDRSLARTKGIF 290          
BLAST of jgi.p|Trimin1|352052 vs. uniprot
Match: D7FX65_ECTSI (XPA_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX65_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 2.410e-29
Identity = 50/107 (46.73%), Postives = 80/107 (74.77%), Query Frame = 0
Query:   79 LDRKLLEAFDVAVCRNCKDSKEAYELMTKADVQKLFLLPEGTIRVLKYVERENPRNKGWTPMRLYLHKDARVWALKRWSTVEALEEERKRRDAKKWEESVKRTKGVF 185
            +D++LLEAF ++VCR CK S+E ++ ++  DV+  +LLP+GTI VLK+VER+NP +  WT M+LYL ++   ++ KRW + + L  ER+RR++ K++ S+ RTKG+F
Sbjct:    1 MDKELLEAFGISVCRTCKMSREEFQYVSTKDVKDTYLLPQGTIAVLKFVERDNPHHSSWTKMKLYLRREVVAYSYKRWGSEDGLAAERRRRESLKYDRSLARTKGIF 107          
BLAST of jgi.p|Trimin1|352052 vs. uniprot
Match: A0A7S3XXW5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXW5_HETAK)

HSP 1 Score: 109 bits (273), Expect = 3.940e-27
Identity = 54/125 (43.20%), Postives = 84/125 (67.20%), Query Frame = 0
Query:   64 CESCGARDTDDPRGTLDRKLLEAFDVAVCRNCKDSKEAYELMTKADVQKLFLLPEGTIRVLKYVERENPRNKGWTPMRLYLHKDARVWALKRWSTVEALEEERKRRDAKKWEESVKRTKGVFSSA 188
            CE+C   D++     L+    + F V+VC  CK S + Y+L+TKA+V ++F LPEGTI+VL ++E+ENPR+  WTPM+L+L K  + ++  RW  +E L +ER+RRD KK + ++KRT G+   +
Sbjct:    8 CEAC-REDSE-----LNETFYQRFQVSVCNQCKISNDDYKLITKAEVVQMFCLPEGTIQVLDFIEKENPRHGTWTPMKLFLQKQVKKYSHDRWGGLEGLLQERRRRDEKKLKNALKRTSGLLKKS 126          
BLAST of jgi.p|Trimin1|352052 vs. uniprot
Match: A0A4D9D9F3_9STRA (XPA_C domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9F3_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 7.840e-20
Identity = 57/146 (39.04%), Postives = 80/146 (54.79%), Query Frame = 0
Query:   42 APLPDAKRAGGGDAETVSGGRVCESCGARDTDDPRGTLDRKLLEAFDVAVCRNCKDS-KEAYELMTKADVQKLFLLPEGTIRVLKYVERENPRNKGWTPMRLYLHKDARVWALKRWSTVEALEEERKRRDAKKWEESVKRTKGVFS 186
            AP+P A R  G        G  CE CG+       G +D    + F + VC  CK++ +E Y L+TK D    FLL EGT+RV+ Y+ER NPRN  +  M+LY  +  R  A +RW   E L EER RR  +++E ++ +T  VF+
Sbjct:   89 APVPKAARVAGK-------GLSCEVCGS-------GLVDPMYHDVFRITVCTPCKNNNEEEYGLVTKGDAVAEFLLQEGTMRVMPYLERNNPRNTKYQKMKLYCRRLLRAKAYERWDGPEGLAEERNRRRERRYESAIDKTLNVFT 220          
BLAST of jgi.p|Trimin1|352052 vs. uniprot
Match: A0A7S4A3N4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A3N4_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 5.620e-15
Identity = 43/123 (34.96%), Postives = 62/123 (50.41%), Query Frame = 0
Query:   64 CESCGARDTDDPRGTLDRKLLEAFDVAVCRNCKDSKEAYELMTKADVQKLFLLPEGTIRVLKYVERENPRNKGWTPMRLYLHKDARVWALKRWSTVEALEEERKRRDAKKWEESVKRTKGVFS 186
            C++CGA          D     AF +  C  C+    + +L+   D  + +LLP+ T++ L  +ERENPR   WTPMRL+L +     A +RW     LE ER+RR A K +    + K  FS
Sbjct:   44 CDTCGA--------LADAAFRTAFSIQTCNACRRRDPSLDLLNATDAARTYLLPQATLKCLPTLERENPRQPTWTPMRLFLRRHLVEHANRRWGDEAGLEAERRRRAAAKVKRDDAKAKDFFS 158          
BLAST of jgi.p|Trimin1|352052 vs. uniprot
Match: A0A7S2MFG3_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MFG3_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.270e-13
Identity = 39/96 (40.62%), Postives = 60/96 (62.50%), Query Frame = 0
Query:   95 CKDSKEAYEL-----MTKADVQKLFLLPEGTIRVLKYVERENPRNKGWTPMRLYLHKDARVWALKRWSTVEALEEERKRRDAKKWEESVKRTKGVF 185
            C D  E +E      +TK++  +++ LPEGT+ V  YVE+ENPR KGW  M+LY   + R  A KR+  ++ L EER +R  K++E+ ++ TK +F
Sbjct:   95 CTDDLEDFERDVGPHVTKSEAMQMYCLPEGTLAVCSYVEKENPRRKGWNKMKLYNRAEIRRRARKRYGGLDGLIEERAKRSMKRFEKDLEETKDIF 190          
BLAST of jgi.p|Trimin1|352052 vs. uniprot
Match: B6K268_SCHJY (XP-A family Rhp14 n=1 Tax=Schizosaccharomyces japonicus (strain yFS275 / FY16936) TaxID=402676 RepID=B6K268_SCHJY)

HSP 1 Score: 74.3 bits (181), Expect = 2.760e-12
Identity = 41/106 (38.68%), Postives = 66/106 (62.26%), Query Frame = 0
Query:   79 LDRKLLEAFDVAVCRNCKDS-KEAYELMTKADVQKLFLLPEGTIR---VLKYVERENPRNKGWTPMRLYLHKDARVWALKRWSTVEALEEERKRRDAKKWEESVKR 180
            LD K LE F   VC  C++   E Y L+TK++ ++ +LL E  +R   V+ ++ + NP  +GW+ M LYL      +A  +W ++EAL+EE +RR+AKK E++ K+
Sbjct:  128 LDAKYLEVFRCRVCHVCREKYPEKYSLLTKSECKQDYLLTEPELRDDTVMPHLLKANPHQQGWSNMMLYLRYQVEEFAKNKWGSLEALDEEFERREAKKKEQNEKK 233          
BLAST of jgi.p|Trimin1|352052 vs. uniprot
Match: A0A7S1E1A0_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E1A0_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 2.880e-12
Identity = 36/82 (43.90%), Postives = 54/82 (65.85%), Query Frame = 0
Query:  104 LMTKADVQKLFLLPEGTIRVLKYVERENPRNKGWTPMRLYLHKDARVWALKRWSTVEALEEERKRRDAKKWEESVKRTKGVF 185
            L+TK + ++ + LPEGT+ V  +VE+ENP  KGW  M+LY   + R+ A KR+  +E L EER  R  KK+E+ + +TK +F
Sbjct:   70 LVTKKEAKERYCLPEGTLAVCSFVEKENPHRKGWNKMKLYERFEIRLRARKRYGGLEGLIEERDERARKKFEKDLDKTKHIF 151          
BLAST of jgi.p|Trimin1|352052 vs. uniprot
Match: A0A7R9ZBY9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZBY9_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 8.560e-12
Identity = 32/70 (45.71%), Postives = 48/70 (68.57%), Query Frame = 0
Query:  101 AYELMTKADVQKLFLLPEGTIRVLKYVERENPRNKGWTPMRLYLHKDARVWALKRWSTVEALEEERKRRD 170
            A + +TK++  + + LPEGT+ V +Y ER+NPR +GW PM+LY   + R  A +RW  +E L EER+RR+
Sbjct:   85 ASKYVTKSEASRQYCLPEGTLAVCRYEERDNPRGRGWAPMKLYRRVEVRRRARERWGGMEGLREERERRE 154          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352052 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A835ZE73_9STRA4.230e-125100.00XPA_C domain-containing protein n=1 Tax=Tribonema ... [more]
A0A6H5KUI3_9PHAE3.700e-3046.34XPA_C domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FX65_ECTSI2.410e-2946.73XPA_C domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A7S3XXW5_HETAK3.940e-2743.20Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A4D9D9F3_9STRA7.840e-2039.04XPA_C domain-containing protein n=2 Tax=Monodopsid... [more]
A0A7S4A3N4_9STRA5.620e-1534.96Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2MFG3_9STRA1.270e-1340.63Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
B6K268_SCHJY2.760e-1238.68XP-A family Rhp14 n=1 Tax=Schizosaccharomyces japo... [more]
A0A7S1E1A0_9STRA2.880e-1243.90Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A7R9ZBY9_9STRA8.560e-1245.71Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 7..27
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 185..213
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..60
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 10..26
IPR022656XPA, C-terminalPFAMPF05181XPA_Ccoord: 102..146
e-value: 1.3E-10
score: 41.0
IPR037129XPA domain superfamilyGENE3D3.90.530.10coord: 59..170
e-value: 1.1E-22
score: 82.1
IPR000465XPAPANTHERPTHR10142DNA REPAIR PROTEIN COMPLEMENTING XP-A CELLScoord: 22..182
IPR009061Putative DNA-binding domain superfamilySUPERFAMILY46955Putative DNA-binding domaincoord: 101..169

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_107contigContig_107:243833..244939 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352052mRNA_11579Tribonema minus UTEX_B_3156 mRNAContig_107 243798..244948 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|352052|estExt_Genemark1.C_Ctg_1070026 ID=Trimin1|352052|estExt_Genemark1.C_Ctg_1070026|Name=jgi.p|Trimin1|352052|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=214bp
MEKLAARKKQQSEQQQVQQQAQHREQEQPEQPSRKRPSPSHAPLPDAKRA
GGGDAETVSGGRVCESCGARDTDDPRGTLDRKLLEAFDVAVCRNCKDSKE
AYELMTKADVQKLFLLPEGTIRVLKYVERENPRNKGWTPMRLYLHKDARV
WALKRWSTVEALEEERKRRDAKKWEESVKRTKGVFSSAGGAAAGGGSGAS
RGRRKAALGPSII*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022656XPA_C
IPR037129XPA_sf
IPR000465XPA
IPR009061DNA-bd_dom_put_sf