mRNA_11579 (mRNA) Tribonema minus UTEX_B_3156
|
Overview
Homology
BLAST of jgi.p|Trimin1|352052 vs. uniprot
Match: A0A835ZE73_9STRA (XPA_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE73_9STRA) HSP 1 Score: 361 bits (927), Expect = 5.200e-125 Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 1
Query: 10 MEKLAARKKQQSEQQQVXXXXXXXXXXXXXXXSRKRPSPSHAPLPDAKRAGGGDAETVSGGRVCESCGARDTDDPRGTLDRKLLEAFDVAVCRNCKDSKEAYELMTKADVQKLFLLPEGTIRVLKYVERENPRNKGWTPMRLYLHKDARVWALKRWSTVEALEEERKRRDAKKWEESVKRTKGVFSSAXXXXXXXXXGASRGRRKAALGPSII 648
MEKLAARKKQQSEQQQVXXXXXXXXXXXXXXXSRKRPSPSHAPLPDAKRAGGGDAETVSGGRVCESCGARDTDDPRGTLDRKLLEAFDVAVCRNCKDSKEAYELMTKADVQKLFLLPEGTIRVLKYVERENPRNKGWTPMRLYLHKDARVWALKRWSTVEALEEERKRRDAKKWEESVKRTKGVFSSAXXXXXXXXXGASRGRRKAALGPSII
Sbjct: 1 MEKLAARKKQQSEQQQVXXXXXXXXXXXXXXXSRKRPSPSHAPLPDAKRAGGGDAETVSGGRVCESCGARDTDDPRGTLDRKLLEAFDVAVCRNCKDSKEAYELMTKADVQKLFLLPEGTIRVLKYVERENPRNKGWTPMRLYLHKDARVWALKRWSTVEALEEERKRRDAKKWEESVKRTKGVFSSAXXXXXXXXXGASRGRRKAALGPSII 213
BLAST of jgi.p|Trimin1|352052 vs. uniprot
Match: A0A6H5KUI3_9PHAE (XPA_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUI3_9PHAE) HSP 1 Score: 122 bits (306), Expect = 5.660e-30 Identity = 57/123 (46.34%), Postives = 88/123 (71.54%), Query Frame = 1
Query: 196 VCESCGARDTDDPRGTLDRKLLEAFDVAVCRNCKDSKEAYELMTKADVQKLFLLPEGTIRVLKYVERENPRNKGWTPMRLYLHKDARVWALKRWSTVEALEEERKRRDAKKWEESVKRTKGVF 564
CE CG + DD R +D++LLEAF ++VCR CK S+E ++ +T DV+ +LLP+GTI VLK+VER+NP + WT M+LYL ++ ++ +RW + + L ER+RR++ K++ S+ RTKG+F
Sbjct: 171 ACEGCGG-EQDDAR--MDKELLEAFGISVCRTCKMSREEFQYVTTKDVKDTYLLPQGTIAVLKFVERDNPHHSSWTKMKLYLRREVVAYSYRRWGSEDGLAAERRRRESLKYDRSLARTKGIF 290
BLAST of jgi.p|Trimin1|352052 vs. uniprot
Match: D7FX65_ECTSI (XPA_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX65_ECTSI) HSP 1 Score: 115 bits (287), Expect = 3.630e-29 Identity = 50/107 (46.73%), Postives = 80/107 (74.77%), Query Frame = 1
Query: 244 LDRKLLEAFDVAVCRNCKDSKEAYELMTKADVQKLFLLPEGTIRVLKYVERENPRNKGWTPMRLYLHKDARVWALKRWSTVEALEEERKRRDAKKWEESVKRTKGVF 564
+D++LLEAF ++VCR CK S+E ++ ++ DV+ +LLP+GTI VLK+VER+NP + WT M+LYL ++ ++ KRW + + L ER+RR++ K++ S+ RTKG+F
Sbjct: 1 MDKELLEAFGISVCRTCKMSREEFQYVSTKDVKDTYLLPQGTIAVLKFVERDNPHHSSWTKMKLYLRREVVAYSYKRWGSEDGLAAERRRRESLKYDRSLARTKGIF 107
BLAST of jgi.p|Trimin1|352052 vs. uniprot
Match: A0A7S3XXW5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXW5_HETAK) HSP 1 Score: 109 bits (273), Expect = 5.860e-27 Identity = 54/125 (43.20%), Postives = 84/125 (67.20%), Query Frame = 1
Query: 199 CESCGARDTDDPRGTLDRKLLEAFDVAVCRNCKDSKEAYELMTKADVQKLFLLPEGTIRVLKYVERENPRNKGWTPMRLYLHKDARVWALKRWSTVEALEEERKRRDAKKWEESVKRTKGVFSSA 573
CE+C D++ L+ + F V+VC CK S + Y+L+TKA+V ++F LPEGTI+VL ++E+ENPR+ WTPM+L+L K + ++ RW +E L +ER+RRD KK + ++KRT G+ +
Sbjct: 8 CEAC-REDSE-----LNETFYQRFQVSVCNQCKISNDDYKLITKAEVVQMFCLPEGTIQVLDFIEKENPRHGTWTPMKLFLQKQVKKYSHDRWGGLEGLLQERRRRDEKKLKNALKRTSGLLKKS 126
BLAST of jgi.p|Trimin1|352052 vs. uniprot
Match: A0A4D9D9F3_9STRA (XPA_C domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9F3_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 1.120e-19 Identity = 57/146 (39.04%), Postives = 80/146 (54.79%), Query Frame = 1
Query: 133 APLPDAKRAGGGDAETVSGGRVCESCGARDTDDPRGTLDRKLLEAFDVAVCRNCKDS-KEAYELMTKADVQKLFLLPEGTIRVLKYVERENPRNKGWTPMRLYLHKDARVWALKRWSTVEALEEERKRRDAKKWEESVKRTKGVFS 567
AP+P A R G G CE CG+ G +D + F + VC CK++ +E Y L+TK D FLL EGT+RV+ Y+ER NPRN + M+LY + R A +RW E L EER RR +++E ++ +T VF+
Sbjct: 89 APVPKAARVAGK-------GLSCEVCGS-------GLVDPMYHDVFRITVCTPCKNNNEEEYGLVTKGDAVAEFLLQEGTMRVMPYLERNNPRNTKYQKMKLYCRRLLRAKAYERWDGPEGLAEERNRRRERRYESAIDKTLNVFT 220
BLAST of jgi.p|Trimin1|352052 vs. uniprot
Match: A0A7S4A3N4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A3N4_9STRA) HSP 1 Score: 79.0 bits (193), Expect = 7.670e-15 Identity = 43/123 (34.96%), Postives = 62/123 (50.41%), Query Frame = 1
Query: 199 CESCGARDTDDPRGTLDRKLLEAFDVAVCRNCKDSKEAYELMTKADVQKLFLLPEGTIRVLKYVERENPRNKGWTPMRLYLHKDARVWALKRWSTVEALEEERKRRDAKKWEESVKRTKGVFS 567
C++CGA D AF + C C+ + +L+ D + +LLP+ T++ L +ERENPR WTPMRL+L + A +RW LE ER+RR A K + + K FS
Sbjct: 44 CDTCGA--------LADAAFRTAFSIQTCNACRRRDPSLDLLNATDAARTYLLPQATLKCLPTLERENPRQPTWTPMRLFLRRHLVEHANRRWGDEAGLEAERRRRAAAKVKRDDAKAKDFFS 158
BLAST of jgi.p|Trimin1|352052 vs. uniprot
Match: A0A7S2MFG3_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MFG3_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 1.710e-13 Identity = 39/96 (40.62%), Postives = 60/96 (62.50%), Query Frame = 1
Query: 292 CKDSKEAYEL-----MTKADVQKLFLLPEGTIRVLKYVERENPRNKGWTPMRLYLHKDARVWALKRWSTVEALEEERKRRDAKKWEESVKRTKGVF 564
C D E +E +TK++ +++ LPEGT+ V YVE+ENPR KGW M+LY + R A KR+ ++ L EER +R K++E+ ++ TK +F
Sbjct: 95 CTDDLEDFERDVGPHVTKSEAMQMYCLPEGTLAVCSYVEKENPRRKGWNKMKLYNRAEIRRRARKRYGGLDGLIEERAKRSMKRFEKDLEETKDIF 190
BLAST of jgi.p|Trimin1|352052 vs. uniprot
Match: B6K268_SCHJY (XP-A family Rhp14 n=1 Tax=Schizosaccharomyces japonicus (strain yFS275 / FY16936) TaxID=402676 RepID=B6K268_SCHJY) HSP 1 Score: 74.3 bits (181), Expect = 3.720e-12 Identity = 41/106 (38.68%), Postives = 66/106 (62.26%), Query Frame = 1
Query: 244 LDRKLLEAFDVAVCRNCKDS-KEAYELMTKADVQKLFLLPEGTIR---VLKYVERENPRNKGWTPMRLYLHKDARVWALKRWSTVEALEEERKRRDAKKWEESVKR 549
LD K LE F VC C++ E Y L+TK++ ++ +LL E +R V+ ++ + NP +GW+ M LYL +A +W ++EAL+EE +RR+AKK E++ K+
Sbjct: 128 LDAKYLEVFRCRVCHVCREKYPEKYSLLTKSECKQDYLLTEPELRDDTVMPHLLKANPHQQGWSNMMLYLRYQVEEFAKNKWGSLEALDEEFERREAKKKEQNEKK 233
BLAST of jgi.p|Trimin1|352052 vs. uniprot
Match: A0A7S1E1A0_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E1A0_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 3.810e-12 Identity = 36/82 (43.90%), Postives = 54/82 (65.85%), Query Frame = 1
Query: 319 LMTKADVQKLFLLPEGTIRVLKYVERENPRNKGWTPMRLYLHKDARVWALKRWSTVEALEEERKRRDAKKWEESVKRTKGVF 564
L+TK + ++ + LPEGT+ V +VE+ENP KGW M+LY + R+ A KR+ +E L EER R KK+E+ + +TK +F
Sbjct: 70 LVTKKEAKERYCLPEGTLAVCSFVEKENPHRKGWNKMKLYERFEIRLRARKRYGGLEGLIEERDERARKKFEKDLDKTKHIF 151
BLAST of jgi.p|Trimin1|352052 vs. uniprot
Match: A0A7R9ZBY9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZBY9_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 1.130e-11 Identity = 32/70 (45.71%), Postives = 48/70 (68.57%), Query Frame = 1
Query: 310 AYELMTKADVQKLFLLPEGTIRVLKYVERENPRNKGWTPMRLYLHKDARVWALKRWSTVEALEEERKRRD 519
A + +TK++ + + LPEGT+ V +Y ER+NPR +GW PM+LY + R A +RW +E L EER+RR+
Sbjct: 85 ASKYVTKSEASRQYCLPEGTLAVCRYEERDNPRGRGWAPMKLYRRVEVRRRARERWGGMEGLREERERRE 154 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352052 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_11579 ID=mRNA_11579|Name=jgi.p|Trimin1|352052|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=686bp|location=Sequence derived from alignment at Contig_107:243798..244948- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CGCAAGGCGATGGAGAAGCTGGCAGCGAGAAAGAAGCAGCAGTCAGAGCAback to top protein sequence of jgi.p|Trimin1|352052 >Trimin1|352052|estExt_Genemark1.C_Ctg_1070026 ID=Trimin1|352052|estExt_Genemark1.C_Ctg_1070026|Name=jgi.p|Trimin1|352052|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=214bp MEKLAARKKQQSEQQQVQQQAQHREQEQPEQPSRKRPSPSHAPLPDAKRAback to top mRNA from alignment at Contig_107:243798..244948- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_11579 ID=mRNA_11579|Name=jgi.p|Trimin1|352052|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1151bp|location=Sequence derived from alignment at Contig_107:243798..244948- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_107:243798..244948- >mRNA_11579 ID=mRNA_11579|Name=jgi.p|Trimin1|352052|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=642bp|location=Sequence derived from alignment at Contig_107:243798..244948- (Tribonema minus UTEX_B_3156 )back to top |