Trimin1|352040|estExt_Genemark1.C_Ctg_1070009 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|352040
Unique NameTrimin1|352040|estExt_Genemark1.C_Ctg_1070009
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length259
Homology
BLAST of jgi.p|Trimin1|352040 vs. uniprot
Match: A0A835ZP26_9STRA (RanBD1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZP26_9STRA)

HSP 1 Score: 404 bits (1037), Expect = 1.550e-140
Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 0
Query:    1 MWQIGANPFQAALSTFGGGGFGSPSGAVGGIFGGXXXXXXXXXXXXXXXXXXXXXXPVQSDGXXDGTEPGSPEQSLSQEPTVIRVAGLQDPRDVRNGEEGERTLLQVRAKLFRLEAKAAPGXXXXXXXXXXXXXXSDTRPEWVEVGIGPVRVLQAQVPPAAGEGAAAAARAPSRVVMRRESHPGGAGTKVLLNVALRGKVEAASQSDKAVRLTAVLAKGSPPTTFLFKVKTNDEAAALLRCIREQVEQHAQHESGKAD 258
            MWQIGANPFQAALSTFGGGGFGSPSGAVGGIFGGXXXXXXXXXXXXXXXXXXXXXXPVQSDGXXDGTEPGSPEQSLSQEPTVIRVAGLQDPRDVRNGEEGERTLLQVRAKLFRLEAKAAPGXXXXXXXXXXXXXXSDTRPEWVEVGIGPVRVLQAQVPPAAGEGAAAAARAPSRVVMRRESHPGGAGTKVLLNVALRGKVEAASQSDKAVRLTAVLAKGSPPTTFLFKVKTNDEAAALLRCIREQVEQHAQHESGKAD
Sbjct:    1 MWQIGANPFQAALSTFGGGGFGSPSGAVGGIFGGXXXXXXXXXXXXXXXXXXXXXXPVQSDGXXDGTEPGSPEQSLSQEPTVIRVAGLQDPRDVRNGEEGERTLLQVRAKLFRLEAKAAPGXXXXXXXXXXXXXXSDTRPEWVEVGIGPVRVLQAQVPPAAGEGAAAAARAPSRVVMRRESHPGGAGTKVLLNVALRGKVEAASQSDKAVRLTAVLAKGSPPTTFLFKVKTNDEAAALLRCIREQVEQHAQHESGKAD 258          
BLAST of jgi.p|Trimin1|352040 vs. uniprot
Match: A0A7S2K2B0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K2B0_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.990e-14
Identity = 69/215 (32.09%), Postives = 92/215 (42.79%), Query Frame = 0
Query:   93 DVRNGEEGERTLLQVRAKLFRLEAKAAPGXXXXXXXXXXXXXXSDTRP-------------------------------------------------EWVEVGIGPVRVLQAQVPPAAGEGAAAAARAPSRVVMRRESHPGGAGTKVLLNVALRGKVEAASQSDKAVRLTAVLAKGSPPTTFLFKVKTNDEAAALLRCIREQVEQHAQHESGKAD 258
            D+ NGEE E  +LQ RAKLFRL  KAA                S   P                                                 EW EVGIGP+RVL+ +         + + +  +R VMRRE HPGG GTKV+LN+ L          +K VRLT V A+G  P  +LFK+KT DE   L++ I   ++  +  E+G+A+
Sbjct:  256 DIANGEEEEECVLQCRAKLFRLCKKAAAAAVPQEAAEGTGLAASHVGPPTLPSAAKNDSVDDSKDEHEXXXXXXXTDAKAAKDGKEIKSDDSSSSGTEWREVGIGPLRVLRTE---------SKSKQITTRCVMRREMHPGGPGTKVILNMKLIKLANIKQSGEKFVRLTTV-AEGGEPVNYLFKLKTVDEVERLIKHIESGIDDAS--ETGEAE 458          
BLAST of jgi.p|Trimin1|352040 vs. uniprot
Match: A0A7S1XJQ4_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XJQ4_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 9.180e-13
Identity = 68/214 (31.78%), Postives = 96/214 (44.86%), Query Frame = 0
Query:   66 GTEPGSPEQSLSQEPT-VIRVAGLQDPRDVRNGEEGERTLLQVRAKLFRL---------------------------EAKAAPGXXXXXXXXXXXXXXSDTRP---------EWVEVGIGPVRVLQAQVPPAAGEGAAAAARAPSRVVMRRESHPGGAGTKVLLNVALRGKVEAASQSDKAVRLTAVLAKGSPPTTFLFKVKTNDEAAALLRCI 242
            G   G  E   ++EP  V+ +A ++      NGEE E    +VRAKL+R                            EAK   G      X          +          +WVEVGIGP+R+L  +     G+  A       R+VMRRES PGG GTKV+LNVAL  +V    Q + ++RL+ + +  S PTT+L +VK +D+   LL  +
Sbjct:  211 GGADGGAEPKAAEEPAPVVSLAEVK----TENGEEAEDVAHEVRAKLYRFAPAIVGDEDKESVKLVQSSAVAKASKTEAKEEEGKAEGESXAKDNGAAEAAKDGEAAKVAAMKWVEVGIGPLRLLARRADDEGGKRRA-------RLVMRRESAPGGPGTKVILNVALNEQVAVVKQMETSMRLSCMDSVTSKPTTYLLRVKRSDQCDDLLEKV 413          
BLAST of jgi.p|Trimin1|352040 vs. uniprot
Match: A0A7S1Z143_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z143_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 2.680e-11
Identity = 64/190 (33.68%), Postives = 85/190 (44.74%), Query Frame = 0
Query:   93 DVRNGEEGERTLLQVRAKLFRLE-------------------------------AKAAPGXXXXXXXXXXXXXXSDTRPEWVEVGIGPVRVLQAQVPPAAGEGAAAAARAPSRVVMRRESHPGGAGTKVLLNVALRGKVEAASQSDKAVRLTAVLAK----GSPPTT-FLFKVKTNDEAAALLRCIREQV 246
            DV NGEE E  + Q RAKLF+L+                               +   P                + + +W EVGIGPVR+L     P+A           +RVV RRES PGG GTK++LNVALR +     Q+DK VRL  V  +    GS  +  +L+KVKT  EA  L + + E +
Sbjct:  244 DVANGEENETCVFQTRAKLFKLDTTKPSSEPSPQESQDSIGSSMAATSVPPSSSSSLGPKKTNSTDADSKLEESQEEKQQWKEVGIGPVRILTL---PSAST---------TRVVQRRESTPGGPGTKLILNVALRKECHVFRQADKYVRLATVEQEEGEEGSLSSVMYLWKVKTVGEADDLEKFLGEGI 421          
BLAST of jgi.p|Trimin1|352040 vs. uniprot
Match: D0NHN9_PHYIT (RanBD1 domain-containing protein n=12 Tax=Phytophthora TaxID=4783 RepID=D0NHN9_PHYIT)

HSP 1 Score: 72.8 bits (177), Expect = 3.640e-11
Identity = 53/158 (33.54%), Postives = 82/158 (51.90%), Query Frame = 0
Query:   93 DVRNGEEGERTLLQVRAKLFRLEAKAAPGXXXXXXXXXXXXXXSDTRPEWVEVGIGPVRVLQAQVPPAAGEGAAAAARAPSRVVMRRESHPGGAGTKVLLNVALRGKVEAASQSDKAVRLTAVLAKGSP-------PTTFLFKVKTNDEAAALLRCIR 243
            ++ NGEEGER L++ RAKLF+L  K                       ++ EVGIGPVRVL A+   A  E      +  +RVVMRRES+P G GTK+L+N +L   +    +++K + LT + A   P       P T+L +  ++++   ++  I+
Sbjct:  211 ELANGEEGERILVEKRAKLFKLVEK-----------------------DYTEVGIGPVRVLNAKDAKADDE------KVMARVVMRRESYPHGPGTKLLMNASLGSCLLCEKKTEKTMLLTVLEANEDPEADKKFTPVTYLMRFGSSEDLDVVMMRIQ 339          
BLAST of jgi.p|Trimin1|352040 vs. uniprot
Match: A0A5D6YEL9_9STRA (RanBD1 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YEL9_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.340e-10
Identity = 56/136 (41.18%), Postives = 72/136 (52.94%), Query Frame = 0
Query:   80 PTVIRVAGLQDPRDVRNGEEGERTLLQVRAKLFRLEAKAAPGXXXXXXXXXXXXXXSDTRPEWVEVGIGPVRVLQAQVPPAAGEGAAAAARAPSRVVMRRESHPGGAGTKVLLNVALRGKVEAASQSDKAVRLTAV 215
            P    V  L D  ++ NGEEGER L++ RAKLF+L  K                       E+ EVGIGP+RVL+      A E AA+A     R+VMRRES+P G GTK+LLN  L   +    ++DKA+ LT V
Sbjct:  192 PESTFVPALTDA-EIANGEEGERILIEKRAKLFKLGDK-----------------------EFAEVGIGPLRVLRL-----ATESAASA-----RLVMRRESYPRGPGTKLLLNARLNACLACIEKTDKAMLLTVV 293          
BLAST of jgi.p|Trimin1|352040 vs. uniprot
Match: A0A8K1FEP6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FEP6_PYTOL)

HSP 1 Score: 70.1 bits (170), Expect = 2.190e-10
Identity = 58/169 (34.32%), Postives = 84/169 (49.70%), Query Frame = 0
Query:   85 VAGLQDPRDVRNGEEGERTLLQVRAKLFRLEAKAAPGXXXXXXXXXXXXXXSDTRPEWVEVGIGPVRVLQAQVPPAAGEGAAAAARAPSRVVMRRESHPGGAGTKVLLNVALRGKVEAASQSDKAVRLTAVL---AKGSPPTTFLFKVKTNDEAAALLRCIREQVEQHA 250
            VA L D  ++ NGEE E  L++ RAKLF+                           ++ EVG+GP RVL+   P  A +  AA  +A +R+VMRRESHP G GTK+LLN  L   +    +++KA+ L       A    PTTFL +  + ++  AL   ++  +  HA
Sbjct:  157 VAALADA-ELANGEEDETILVEKRAKLFKFVDS-----------------------DYSEVGVGPFRVLK---PKDAQDDDAA--KASARMVMRRESHPHGPGTKLLLNARLSACLSCVKKAEKALMLVIAETDEADKIKPTTFLLRFASQEDLLALQDAVKALLPAHA 296          
BLAST of jgi.p|Trimin1|352040 vs. uniprot
Match: A0A7R9YC94_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YC94_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 3.080e-10
Identity = 45/104 (43.27%), Postives = 62/104 (59.62%), Query Frame = 0
Query:  142 WVEVGIGPVRVLQAQVPPAAGEGAAAAARAP------SRVVMRRESHPGGAGTKVLLNVALRGKVEAASQSDKAVRLTAVLAKGSPPTTFLFKVKTNDEAAALL 239
            WVEVGIGP+R+L  +   ++    +  A AP      +R+VMRRES PGG GTKV+LNVAL  + E    +D  +RL+ +      P T+L +VK  D+A  LL
Sbjct:  337 WVEVGIGPLRLLTRKTSRSSEGDNSGEAPAPDERQDRARLVMRRESAPGGPGTKVILNVALSTQTEITMLTDTNLRLSCLDGVTKKPATYLVRVKRADQAEELL 440          
BLAST of jgi.p|Trimin1|352040 vs. uniprot
Match: A0A6A3RDJ7_9STRA (RanBD1 domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3RDJ7_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 4.120e-10
Identity = 51/154 (33.12%), Postives = 80/154 (51.95%), Query Frame = 0
Query:   93 DVRNGEEGERTLLQVRAKLFRLEAKAAPGXXXXXXXXXXXXXXSDTRPEWVEVGIGPVRVLQAQVPPAAGEGAAAAARAPSRVVMRRESHPGGAGTKVLLNVALRGKVEAASQSDKAVRLTAVLA-------KGSPPTTFLFKVKTNDEAAALL 239
            ++ NGEEGE+ L++ RAKLF+L  K                       ++ EVGIGP+RVL A      G+      ++ +RVVMRRESHP G G+K+L+N +L   +    +++K + LT + A       K   P T+L +  + D+  A++
Sbjct:  218 ELANGEEGEQILVEKRAKLFKLVEK-----------------------DYAEVGIGPLRVLNATDAKTDGD------KSTARVVMRRESHPHGPGSKLLMNASLGSCLLCEKKTEKTMLLTVLEANEDAEAEKKVVPVTYLMRFGSPDDLDAVM 342          
BLAST of jgi.p|Trimin1|352040 vs. uniprot
Match: A0A2P4XGM7_9STRA (Zinc ion binding protein n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XGM7_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 4.680e-9
Identity = 49/161 (30.43%), Postives = 82/161 (50.93%), Query Frame = 0
Query:   93 DVRNGEEGERTLLQVRAKLFRLEAKAAPGXXXXXXXXXXXXXXSDTRPEWVEVGIGPVRVLQAQVPPAAGEGAAAAARAPSRVVMRRESHPGGAGTKVLLNVALRGKVEAASQSDKAVRLTAVLA-------KGSPPTTFLFKVKTNDEAAALLRCIREQV 246
            ++ NGEEGE+ L++ RAKLF+L  K                       ++ EVGIGP+RVL A+      E      ++ +R+VMRRES+P G GTK+L+N +L   +    +++K + LT + A       K   P T+L +  + ++   ++  I+  +
Sbjct:  206 ELANGEEGEQILVEKRAKLFKLVEK-----------------------DYAEVGIGPLRVLDAKDAKIEDE------KSTARIVMRRESYPHGPGTKLLMNASLSSCLLCEKKTEKTMLLTVLEANEDSEAEKKFVPATYLMRFGSPEDLDVVMMRIQTHI 337          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352040 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A835ZP26_9STRA1.550e-140100.00RanBD1 domain-containing protein n=1 Tax=Tribonema... [more]
A0A7S2K2B0_9STRA1.990e-1432.09Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S1XJQ4_9STRA9.180e-1331.78Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S1Z143_9STRA2.680e-1133.68Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
D0NHN9_PHYIT3.640e-1133.54RanBD1 domain-containing protein n=12 Tax=Phytopht... [more]
A0A5D6YEL9_9STRA1.340e-1041.18RanBD1 domain-containing protein n=1 Tax=Pythium b... [more]
A0A8K1FEP6_PYTOL2.190e-1034.32Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7R9YC94_9STRA3.080e-1043.27Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A6A3RDJ7_9STRA4.120e-1033.12RanBD1 domain-containing protein n=2 Tax=Phytophth... [more]
A0A2P4XGM7_9STRA4.680e-930.43Zinc ion binding protein n=2 Tax=Phytophthora palm... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000156Ran binding domainSMARTSM00160ranbd_3coord: 85..246
e-value: 3.3E-5
score: 1.1
IPR000156Ran binding domainPROSITEPS50196RANBD1coord: 85..180
score: 12.941475
IPR011993PH-like domain superfamilyGENE3D2.30.29.30coord: 91..257
e-value: 1.7E-24
score: 88.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 116..140
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..101
NoneNo IPR availableSUPERFAMILY50729PH domain-likecoord: 89..248
IPR045255Ran binding protein RanBP1-likePANTHERPTHR23138RAN BINDING PROTEINcoord: 37..241

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_107contigContig_107:80699..84477 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352040mRNA_11561Tribonema minus UTEX_B_3156 mRNAContig_107 80699..84635 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|352040|estExt_Genemark1.C_Ctg_1070009 ID=Trimin1|352040|estExt_Genemark1.C_Ctg_1070009|Name=jgi.p|Trimin1|352040|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=259bp
MWQIGANPFQAALSTFGGGGFGSPSGAVGGIFGGGGGGLGMGMGGFGAGA
AQGTGSPVQSDGEGDGTEPGSPEQSLSQEPTVIRVAGLQDPRDVRNGEEG
ERTLLQVRAKLFRLEAKAAPGGGGGGGGGGGGGGSSDTRPEWVEVGIGPV
RVLQAQVPPAAGEGAAAAARAPSRVVMRRESHPGGAGTKVLLNVALRGKV
EAASQSDKAVRLTAVLAKGSPPTTFLFKVKTNDEAAALLRCIREQVEQHA
QHESGKAD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000156Ran_bind_dom
IPR011993PH-like_dom_sf
IPR045255RanBP1-like