mRNA_11561 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|352040 vs. uniprot
Match: A0A835ZP26_9STRA (RanBD1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZP26_9STRA) HSP 1 Score: 404 bits (1039), Expect = 5.810e-140 Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 1
Query: 1 MWQIGANPFQAALSTFGGGGFGSPSGAVGGIFGGXXXXXXXXXXXXXXXXXXXXXXPVQSDGXXDGTEPGSPEQSLSQEPTVIRVAGLQDPRDVRNGEEGERTLLQVRAKLFRLEAKAAPGXXXXXXXXXXXXXXSDTRPEWVEVGIGPVRVLQAQVPPAAGEGAAAAARAPSRVVMRRESHPGGAGTKVLLNVALRGKVEAASQSDKAVRLTAVLAKGSPPTTFLFKVKTNDEAAALLRCIREQVEQHAQHESGKAD 774
MWQIGANPFQAALSTFGGGGFGSPSGAVGGIFGGXXXXXXXXXXXXXXXXXXXXXXPVQSDGXXDGTEPGSPEQSLSQEPTVIRVAGLQDPRDVRNGEEGERTLLQVRAKLFRLEAKAAPGXXXXXXXXXXXXXXSDTRPEWVEVGIGPVRVLQAQVPPAAGEGAAAAARAPSRVVMRRESHPGGAGTKVLLNVALRGKVEAASQSDKAVRLTAVLAKGSPPTTFLFKVKTNDEAAALLRCIREQVEQHAQHESGKAD
Sbjct: 1 MWQIGANPFQAALSTFGGGGFGSPSGAVGGIFGGXXXXXXXXXXXXXXXXXXXXXXPVQSDGXXDGTEPGSPEQSLSQEPTVIRVAGLQDPRDVRNGEEGERTLLQVRAKLFRLEAKAAPGXXXXXXXXXXXXXXSDTRPEWVEVGIGPVRVLQAQVPPAAGEGAAAAARAPSRVVMRRESHPGGAGTKVLLNVALRGKVEAASQSDKAVRLTAVLAKGSPPTTFLFKVKTNDEAAALLRCIREQVEQHAQHESGKAD 258
BLAST of jgi.p|Trimin1|352040 vs. uniprot
Match: A0A7S2K2B0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K2B0_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 2.770e-14 Identity = 69/215 (32.09%), Postives = 92/215 (42.79%), Query Frame = 1
Query: 277 DVRNGEEGERTLLQVRAKLFRLEAKAAPGXXXXXXXXXXXXXXSDTRP-------------------------------------------------EWVEVGIGPVRVLQAQVPPAAGEGAAAAARAPSRVVMRRESHPGGAGTKVLLNVALRGKVEAASQSDKAVRLTAVLAKGSPPTTFLFKVKTNDEAAALLRCIREQVEQHAQHESGKAD 774
D+ NGEE E +LQ RAKLFRL KAA S P EW EVGIGP+RVL+ + + + + +R VMRRE HPGG GTKV+LN+ L +K VRLT V A+G P +LFK+KT DE L++ I ++ + E+G+A+
Sbjct: 256 DIANGEEEEECVLQCRAKLFRLCKKAAAAAVPQEAAEGTGLAASHVGPPTLPSAAKNDSVDDSKDEHEXXXXXXXTDAKAAKDGKEIKSDDSSSSGTEWREVGIGPLRVLRTE---------SKSKQITTRCVMRREMHPGGPGTKVILNMKLIKLANIKQSGEKFVRLTTV-AEGGEPVNYLFKLKTVDEVERLIKHIESGIDDAS--ETGEAE 458
BLAST of jgi.p|Trimin1|352040 vs. uniprot
Match: A0A7S1XJQ4_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XJQ4_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 1.590e-12 Identity = 72/226 (31.86%), Postives = 102/226 (45.13%), Query Frame = 1
Query: 196 GTEPGSPEQSLSQEPT-VIRVAGLQDPRDVRNGEEGERTLLQVRAKLFRL---------------------------EAKAAPGXXXXXXXXXXXXXXSDTRP---------EWVEVGIGPVRVLQAQVPPAAGEGAAAAARAPSRVVMRRESHPGGAGTKVLLNVALRGKVEAASQSDKAVRLTAVLAKGSPPTTFLFKVKTNDEAAALLRCIREQVEQHAQHES 762
G G E ++EP V+ +A ++ NGEE E +VRAKL+R EAK G X + +WVEVGIGP+R+L + G+ A R+VMRRES PGG GTKV+LNVAL +V Q + ++RL+ + + S PTT+L +VK +D+ LL E+VE + E+
Sbjct: 211 GGADGGAEPKAAEEPAPVVSLAEVK----TENGEEAEDVAHEVRAKLYRFAPAIVGDEDKESVKLVQSSAVAKASKTEAKEEEGKAEGESXAKDNGAAEAAKDGEAAKVAAMKWVEVGIGPLRLLARRADDEGGKRRA-------RLVMRRESAPGGPGTKVILNVALNEQVAVVKQMETSMRLSCMDSVTSKPTTYLLRVKRSDQCDDLL----EKVESFTKGEN 421
BLAST of jgi.p|Trimin1|352040 vs. uniprot
Match: A0A7S1Z143_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z143_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 4.430e-11 Identity = 64/190 (33.68%), Postives = 85/190 (44.74%), Query Frame = 1
Query: 277 DVRNGEEGERTLLQVRAKLFRLE-------------------------------AKAAPGXXXXXXXXXXXXXXSDTRPEWVEVGIGPVRVLQAQVPPAAGEGAAAAARAPSRVVMRRESHPGGAGTKVLLNVALRGKVEAASQSDKAVRLTAVLAK----GSPPTT-FLFKVKTNDEAAALLRCIREQV 738
DV NGEE E + Q RAKLF+L+ + P + + +W EVGIGPVR+L P+A +RVV RRES PGG GTK++LNVALR + Q+DK VRL V + GS + +L+KVKT EA L + + E +
Sbjct: 244 DVANGEENETCVFQTRAKLFKLDTTKPSSEPSPQESQDSIGSSMAATSVPPSSSSSLGPKKTNSTDADSKLEESQEEKQQWKEVGIGPVRILTL---PSAST---------TRVVQRRESTPGGPGTKLILNVALRKECHVFRQADKYVRLATVEQEEGEEGSLSSVMYLWKVKTVGEADDLEKFLGEGI 421
BLAST of jgi.p|Trimin1|352040 vs. uniprot
Match: D0NHN9_PHYIT (RanBD1 domain-containing protein n=12 Tax=Phytophthora TaxID=4783 RepID=D0NHN9_PHYIT) HSP 1 Score: 73.2 bits (178), Expect = 5.710e-11 Identity = 53/161 (32.92%), Postives = 83/161 (51.55%), Query Frame = 1
Query: 277 DVRNGEEGERTLLQVRAKLFRLEAKAAPGXXXXXXXXXXXXXXSDTRPEWVEVGIGPVRVLQAQVPPAAGEGAAAAARAPSRVVMRRESHPGGAGTKVLLNVALRGKVEAASQSDKAVRLTAVLAKGSP-------PTTFLFKVKTNDEAAALLRCIREQV 738
++ NGEEGER L++ RAKLF+L K ++ EVGIGPVRVL A+ A E + +RVVMRRES+P G GTK+L+N +L + +++K + LT + A P P T+L + ++++ ++ I+ +
Sbjct: 211 ELANGEEGERILVEKRAKLFKLVEK-----------------------DYTEVGIGPVRVLNAKDAKADDE------KVMARVVMRRESYPHGPGTKLLMNASLGSCLLCEKKTEKTMLLTVLEANEDPEADKKFTPVTYLMRFGSSEDLDVVMMRIQTHM 342
BLAST of jgi.p|Trimin1|352040 vs. uniprot
Match: A0A5D6YEL9_9STRA (RanBD1 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YEL9_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 2.800e-10 Identity = 56/136 (41.18%), Postives = 72/136 (52.94%), Query Frame = 1
Query: 238 PTVIRVAGLQDPRDVRNGEEGERTLLQVRAKLFRLEAKAAPGXXXXXXXXXXXXXXSDTRPEWVEVGIGPVRVLQAQVPPAAGEGAAAAARAPSRVVMRRESHPGGAGTKVLLNVALRGKVEAASQSDKAVRLTAV 645
P V L D ++ NGEEGER L++ RAKLF+L K E+ EVGIGP+RVL+ A E AA+A R+VMRRES+P G GTK+LLN L + ++DKA+ LT V
Sbjct: 192 PESTFVPALTDA-EIANGEEGERILIEKRAKLFKLGDK-----------------------EFAEVGIGPLRVLRL-----ATESAASA-----RLVMRRESYPRGPGTKLLLNARLNACLACIEKTDKAMLLTVV 293
BLAST of jgi.p|Trimin1|352040 vs. uniprot
Match: A0A8K1FEP6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FEP6_PYTOL) HSP 1 Score: 70.5 bits (171), Expect = 3.230e-10 Identity = 58/169 (34.32%), Postives = 84/169 (49.70%), Query Frame = 1
Query: 253 VAGLQDPRDVRNGEEGERTLLQVRAKLFRLEAKAAPGXXXXXXXXXXXXXXSDTRPEWVEVGIGPVRVLQAQVPPAAGEGAAAAARAPSRVVMRRESHPGGAGTKVLLNVALRGKVEAASQSDKAVRLTAVL---AKGSPPTTFLFKVKTNDEAAALLRCIREQVEQHA 750
VA L D ++ NGEE E L++ RAKLF+ ++ EVG+GP RVL+ P A + AA +A +R+VMRRESHP G GTK+LLN L + +++KA+ L A PTTFL + + ++ AL ++ + HA
Sbjct: 157 VAALADA-ELANGEEDETILVEKRAKLFKFVDS-----------------------DYSEVGVGPFRVLK---PKDAQDDDAA--KASARMVMRRESHPHGPGTKLLLNARLSACLSCVKKAEKALMLVIAETDEADKIKPTTFLLRFASQEDLLALQDAVKALLPAHA 296
BLAST of jgi.p|Trimin1|352040 vs. uniprot
Match: A0A7R9YC94_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YC94_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 6.610e-10 Identity = 45/104 (43.27%), Postives = 62/104 (59.62%), Query Frame = 1
Query: 424 WVEVGIGPVRVLQAQVPPAAGEGAAAAARAP------SRVVMRRESHPGGAGTKVLLNVALRGKVEAASQSDKAVRLTAVLAKGSPPTTFLFKVKTNDEAAALL 717
WVEVGIGP+R+L + ++ + A AP +R+VMRRES PGG GTKV+LNVAL + E +D +RL+ + P T+L +VK D+A LL
Sbjct: 337 WVEVGIGPLRLLTRKTSRSSEGDNSGEAPAPDERQDRARLVMRRESAPGGPGTKVILNVALSTQTEITMLTDTNLRLSCLDGVTKKPATYLVRVKRADQAEELL 440
BLAST of jgi.p|Trimin1|352040 vs. uniprot
Match: A0A6A3RDJ7_9STRA (RanBD1 domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3RDJ7_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 8.370e-10 Identity = 51/154 (33.12%), Postives = 80/154 (51.95%), Query Frame = 1
Query: 277 DVRNGEEGERTLLQVRAKLFRLEAKAAPGXXXXXXXXXXXXXXSDTRPEWVEVGIGPVRVLQAQVPPAAGEGAAAAARAPSRVVMRRESHPGGAGTKVLLNVALRGKVEAASQSDKAVRLTAVLA-------KGSPPTTFLFKVKTNDEAAALL 717
++ NGEEGE+ L++ RAKLF+L K ++ EVGIGP+RVL A G+ ++ +RVVMRRESHP G G+K+L+N +L + +++K + LT + A K P T+L + + D+ A++
Sbjct: 218 ELANGEEGEQILVEKRAKLFKLVEK-----------------------DYAEVGIGPLRVLNATDAKTDGD------KSTARVVMRRESHPHGPGSKLLMNASLGSCLLCEKKTEKTMLLTVLEANEDAEAEKKVVPVTYLMRFGSPDDLDAVM 342
BLAST of jgi.p|Trimin1|352040 vs. uniprot
Match: A0A2P4XGM7_9STRA (Zinc ion binding protein n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XGM7_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 6.740e-9 Identity = 49/161 (30.43%), Postives = 82/161 (50.93%), Query Frame = 1
Query: 277 DVRNGEEGERTLLQVRAKLFRLEAKAAPGXXXXXXXXXXXXXXSDTRPEWVEVGIGPVRVLQAQVPPAAGEGAAAAARAPSRVVMRRESHPGGAGTKVLLNVALRGKVEAASQSDKAVRLTAVLA-------KGSPPTTFLFKVKTNDEAAALLRCIREQV 738
++ NGEEGE+ L++ RAKLF+L K ++ EVGIGP+RVL A+ E ++ +R+VMRRES+P G GTK+L+N +L + +++K + LT + A K P T+L + + ++ ++ I+ +
Sbjct: 206 ELANGEEGEQILVEKRAKLFKLVEK-----------------------DYAEVGIGPLRVLDAKDAKIEDE------KSTARIVMRRESYPHGPGTKLLMNASLSSCLLCEKKTEKTMLLTVLEANEDSEAEKKFVPATYLMRFGSPEDLDVVMMRIQTHI 337
BLAST of jgi.p|Trimin1|352040 vs. uniprot
Match: A0A835YG99_9STRA (J domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YG99_9STRA) HSP 1 Score: 960 bits (2482), Expect = 0.000e+0 Identity = 762/762 (100.00%), Postives = 762/762 (100.00%), Query Frame = 1
Query: 1 MTHRDANLYGILGIEPNATAEDIRRAYLAKARACHPNITSALNDARRNHVCRRGSVAXXXXXXXXXXXXXXAPHRAXXXXXXXXXXXXXXXAPHAAEAFKRVAHAHETLSHPLRRARYDEAHAGGGMSSGAHYTYPRGSGYGGYAAGGEDLRGFAGRASAARGSAAECAHDWAHAGGGMSSGAHYPYPRGSYSGYTGRGPAGVRWQGLRCQSGGYGGSYAAGGEDLRSSRAGPPLPEARALRGARASRSSASAFNALDVFVHPRFIASCXXXXXXXXXXXXXXXXXMFGVLPLLLLGGGLVGGLLSTDDGATKRAPQGDKVPAWFNPASQRWETPSPWDPRYRAQLARNPEQMVAPVAAAATATGAXXXXXXXVTGAFAXXXXXXXXXXXXAGSSGTCLPTPPLLPALALPLPQGCRSQLQWHLPXXXXXXXXXXPQGAPAVTSVAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSSLCRHCDGVFDDDSKMIDSFISRGALGTALVAALRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRASKAAALRVFIGCSALSWVQGSSAQAADGSAAQPAHLRGLCLQWSVAAAKSSVNINSGARNAPARGTPNSSAPRANHTGMQQMAARTAHRRRCVRAAADASRNLKAAARLCKAGARSFRNRIPPVRSVS 2286
MTHRDANLYGILGIEPNATAEDIRRAYLAKARACHPNITSALNDARRNHVCRRGSVAXXXXXXXXXXXXXXAPHRAXXXXXXXXXXXXXXXAPHAAEAFKRVAHAHETLSHPLRRARYDEAHAGGGMSSGAHYTYPRGSGYGGYAAGGEDLRGFAGRASAARGSAAECAHDWAHAGGGMSSGAHYPYPRGSYSGYTGRGPAGVRWQGLRCQSGGYGGSYAAGGEDLRSSRAGPPLPEARALRGARASRSSASAFNALDVFVHPRFIASCXXXXXXXXXXXXXXXXXMFGVLPLLLLGGGLVGGLLSTDDGATKRAPQGDKVPAWFNPASQRWETPSPWDPRYRAQLARNPEQMVAPVAAAATATGAXXXXXXXVTGAFAXXXXXXXXXXXXAGSSGTCLPTPPLLPALALPLPQGCRSQLQWHLPXXXXXXXXXXPQGAPAVTSVAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSSLCRHCDGVFDDDSKMIDSFISRGALGTALVAALRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRASKAAALRVFIGCSALSWVQGSSAQAADGSAAQPAHLRGLCLQWSVAAAKSSVNINSGARNAPARGTPNSSAPRANHTGMQQMAARTAHRRRCVRAAADASRNLKAAARLCKAGARSFRNRIPPVRSVS
Sbjct: 1 MTHRDANLYGILGIEPNATAEDIRRAYLAKARACHPNITSALNDARRNHVCRRGSVAXXXXXXXXXXXXXXAPHRAXXXXXXXXXXXXXXXAPHAAEAFKRVAHAHETLSHPLRRARYDEAHAGGGMSSGAHYTYPRGSGYGGYAAGGEDLRGFAGRASAARGSAAECAHDWAHAGGGMSSGAHYPYPRGSYSGYTGRGPAGVRWQGLRCQSGGYGGSYAAGGEDLRSSRAGPPLPEARALRGARASRSSASAFNALDVFVHPRFIASCXXXXXXXXXXXXXXXXXMFGVLPLLLLGGGLVGGLLSTDDGATKRAPQGDKVPAWFNPASQRWETPSPWDPRYRAQLARNPEQMVAPVAAAATATGAXXXXXXXVTGAFAXXXXXXXXXXXXAGSSGTCLPTPPLLPALALPLPQGCRSQLQWHLPXXXXXXXXXXPQGAPAVTSVAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSSLCRHCDGVFDDDSKMIDSFISRGALGTALVAALRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRASKAAALRVFIGCSALSWVQGSSAQAADGSAAQPAHLRGLCLQWSVAAAKSSVNINSGARNAPARGTPNSSAPRANHTGMQQMAARTAHRRRCVRAAADASRNLKAAARLCKAGARSFRNRIPPVRSVS 762 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352040 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
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BLAST of jgi.p|Trimin1|352040 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_11561 ID=mRNA_11561|Name=jgi.p|Trimin1|352040|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=935bp|location=Sequence derived from alignment at Contig_107:80699..84635+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGTGGCAGATCGGAGCAAACCCCTTTCAGGCGGCGCTGAGCACATTCGGback to top protein sequence of jgi.p|Trimin1|352040 >Trimin1|352040|estExt_Genemark1.C_Ctg_1070009 ID=Trimin1|352040|estExt_Genemark1.C_Ctg_1070009|Name=jgi.p|Trimin1|352040|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=259bp MWQIGANPFQAALSTFGGGGFGSPSGAVGGIFGGGGGGLGMGMGGFGAGAback to top mRNA from alignment at Contig_107:80699..84635+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_11561 ID=mRNA_11561|Name=jgi.p|Trimin1|352040|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3937bp|location=Sequence derived from alignment at Contig_107:80699..84635+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_107:80699..84635+ >mRNA_11561 ID=mRNA_11561|Name=jgi.p|Trimin1|352040|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=777bp|location=Sequence derived from alignment at Contig_107:80699..84635+ (Tribonema minus UTEX_B_3156 )back to top |