mRNA_5206 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|155466 vs. uniprot
Match: A0A835YWV9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWV9_9STRA) HSP 1 Score: 172 bits (437), Expect = 9.440e-55 Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1 Query: 1 IGQGHLDAVLLPWPLASSGQRRQTDAATRTRDTARFLDTWQALEKLKQSGVVKALGVDQCLPWHLDVIQQDLRLSPAANFVFV 249 IGQGHLDAVLLPWPLASSGQRRQTDAATRTRDTARFLDTWQALEKLKQSGVVKALGVDQCLPWHLDVIQQDLRLSPAANFVFV Sbjct: 1 IGQGHLDAVLLPWPLASSGQRRQTDAATRTRDTARFLDTWQALEKLKQSGVVKALGVDQCLPWHLDVIQQDLRLSPAANFVFV 83
BLAST of jgi.p|Trimin1|155466 vs. uniprot
Match: A0A3A9G001_9BACT (Aldo/keto reductase n=1 Tax=bacterium 1XD42-8 TaxID=2320102 RepID=A0A3A9G001_9BACT) HSP 1 Score: 58.9 bits (141), Expect = 2.170e-8 Identity = 32/77 (41.56%), Postives = 45/77 (58.44%), Query Frame = 1 Query: 13 HLDAVLLPWPLASSGQRRQTDAATRTRDTARFLDTWQALEKLKQSGVVKALGVDQCLPWHLDVIQQDLRLSPAANFV 243 +LD L+ WP GQ++ AR LDTW+A+EKL Q G+V+A+GV C P HL+ I + ++ PA N V Sbjct: 102 YLDLFLIHWP----GQQK-----------ARLLDTWRAMEKLYQDGLVRAIGVCNCEPQHLEWILEKAQIIPAINQV 163
BLAST of jgi.p|Trimin1|155466 vs. uniprot
Match: A0A5M9I4X2_9FIRM (Aldo/keto reductase n=1 Tax=Mediterraneibacter catenae TaxID=2594882 RepID=A0A5M9I4X2_9FIRM) HSP 1 Score: 56.6 bits (135), Expect = 1.590e-7 Identity = 28/77 (36.36%), Postives = 43/77 (55.84%), Query Frame = 1 Query: 13 HLDAVLLPWPLASSGQR--RQTDAATRTRDTARFLDTWQALEKLKQSGVVKALGVDQCLPWHLDVIQQDLRLSPAAN 237 +LD L+ WPL G R +Q D +TW+A+E L + G ++A+G+ LP+H+D I +D R+ PA N Sbjct: 108 YLDLYLIHWPLPEPGYREWKQLDR-----------ETWRAMEDLYEEGKIRAIGLSNFLPYHIDNILKDCRVKPAVN 173
BLAST of jgi.p|Trimin1|155466 vs. uniprot
Match: A0A8H3YBY0_9TREE (Aldo_ket_red domain-containing protein n=1 Tax=Naganishia liquefaciens TaxID=104408 RepID=A0A8H3YBY0_9TREE) HSP 1 Score: 56.2 bits (134), Expect = 2.330e-7 Identity = 27/86 (31.40%), Postives = 47/86 (54.65%), Query Frame = 1 Query: 1 IGQGHLDAVLLPWPLASSGQRRQTDAATRTRDTAR-------FLDTWQALEKLKQSGVVKALGVDQCLPWHLDVIQQDLRLSPAAN 237 +G +LD L+ WP+ +G+ + + AR ++DTW+ +EKL +G VKA+GV C +L+ + + ++ PAAN Sbjct: 96 LGTDYLDLYLMHWPIPLNGENKSHPLVPTRANGARDLDEEWSYIDTWKEMEKLVDTGKVKAIGVSNCSVPYLEELLKHAKIVPAAN 181
BLAST of jgi.p|Trimin1|155466 vs. uniprot
Match: W1I6I6_9BACT (Uncultured bacterium extrachromosomal DNA RGI01730 n=1 Tax=uncultured bacterium TaxID=77133 RepID=W1I6I6_9BACT) HSP 1 Score: 55.5 bits (132), Expect = 2.360e-7 Identity = 28/77 (36.36%), Postives = 44/77 (57.14%), Query Frame = 1 Query: 13 HLDAVLLPWPLASSGQR--RQTDAATRTRDTARFLDTWQALEKLKQSGVVKALGVDQCLPWHLDVIQQDLRLSPAAN 237 +LD L+ WP+ G +Q D LDTW+A+E+L +SG ++A+G+ LP HL+ + Q+ R+ PA N Sbjct: 23 YLDLYLIHWPIPEVGYADWKQLD-----------LDTWRAMEELYESGRIRAIGLSNFLPHHLENLLQNARIKPAVN 88
BLAST of jgi.p|Trimin1|155466 vs. uniprot
Match: A0A2Y9BE08_9FIRM (Aldo/keto reductase n=2 Tax=Eubacteriales TaxID=186802 RepID=A0A2Y9BE08_9FIRM) HSP 1 Score: 55.5 bits (132), Expect = 4.050e-7 Identity = 28/79 (35.44%), Postives = 44/79 (55.70%), Query Frame = 1 Query: 1 IGQGHLDAVLLPWPLASSGQRRQTDAATRTRDTARFLDTWQALEKLKQSGVVKALGVDQCLPWHLDVIQQDLRLSPAAN 237 +G +LD L+ WPL G T A LDTW+A+E+L + G+++A+GV LP H++ I Q+ + PA + Sbjct: 99 LGTDYLDLYLIHWPLPEPGY---------TDWKALDLDTWKAMEELYKEGLIRAIGVSNFLPHHIENIWQNCEIYPAVD 168
BLAST of jgi.p|Trimin1|155466 vs. uniprot
Match: UPI001422966D (aldo/keto reductase n=2 Tax=Amycolatopsis TaxID=1813 RepID=UPI001422966D) HSP 1 Score: 55.1 bits (131), Expect = 5.480e-7 Identity = 28/79 (35.44%), Postives = 40/79 (50.63%), Query Frame = 1 Query: 1 IGQGHLDAVLLPWPLASSGQRRQTDAATRTRDTARFLDTWQALEKLKQSGVVKALGVDQCLPWHLDVIQQDLRLSPAAN 237 +G HLD L+ WP+ D R++ TW+ALEK+ G V+A+GV P HLD + Q+ + PA N Sbjct: 98 LGLDHLDLYLIHWPVP---------------DADRYVGTWRALEKVHAEGRVRAIGVSNFQPHHLDRLAQESDIVPAVN 161
BLAST of jgi.p|Trimin1|155466 vs. uniprot
Match: A0A371AUT1_9FIRM (Aldo/keto reductase n=1 Tax=Anaerosacchariphilus polymeriproducens TaxID=1812858 RepID=A0A371AUT1_9FIRM) HSP 1 Score: 55.1 bits (131), Expect = 5.580e-7 Identity = 26/79 (32.91%), Postives = 41/79 (51.90%), Query Frame = 1 Query: 1 IGQGHLDAVLLPWPLASSGQRRQTDAATRTRDTARFLDTWQALEKLKQSGVVKALGVDQCLPWHLDVIQQDLRLSPAAN 237 + ++D L+ WP A + LDTW+A+E+ ++G+VKA+GV LP HLDVI + ++ P N Sbjct: 96 LQMNYIDVYLVHWPKADIQDENWK---------VKLLDTWKAMEECYEAGLVKAIGVSNFLPHHLDVIMEKAKVQPMIN 165
BLAST of jgi.p|Trimin1|155466 vs. uniprot
Match: A0A4Y9F362_9MICC (Aldo/keto reductase n=10 Tax=Rothia nasimurium TaxID=85336 RepID=A0A4Y9F362_9MICC) HSP 1 Score: 54.7 bits (130), Expect = 7.450e-7 Identity = 27/79 (34.18%), Postives = 44/79 (55.70%), Query Frame = 1 Query: 1 IGQGHLDAVLLPWPLASSGQRRQTDAATRTRDTARFLDTWQALEKLKQSGVVKALGVDQCLPWHLDVIQQDLRLSPAAN 237 +G +LDA L+ WP S G ++DTW+AL K ++ G+VK++GV LP H+D + ++ ++PA N Sbjct: 95 MGFDYLDAYLIHWPNPSQGL---------------YVDTWRALIKAQEEGLVKSIGVSNFLPEHIDRLIEETGVTPAIN 158
BLAST of jgi.p|Trimin1|155466 vs. uniprot
Match: F6FR87_ISOV2 (2,5-didehydrogluconate reductase n=1 Tax=Isoptericola variabilis (strain 225) TaxID=743718 RepID=F6FR87_ISOV2) HSP 1 Score: 54.7 bits (130), Expect = 7.650e-7 Identity = 29/83 (34.94%), Postives = 43/83 (51.81%), Query Frame = 1 Query: 1 IGQGHLDAVLLPWPLASSGQRRQTDAATRTRDTARFLDTWQALEKLKQSGVVKALGVDQCLPWHLDVIQQDLRLSPAANFVFV 249 +G ++D L+ WP+ S +++TW+A EKL + GVVKA+GV LP HLD + + + PA N V V Sbjct: 97 LGLDYVDLYLIHWPVPSKDL---------------YVETWKAFEKLLEEGVVKAIGVSNFLPEHLDRLVSETDVVPAVNQVEV 164 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|155466 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_5206 ID=mRNA_5206|Name=jgi.p|Trimin1|155466|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=249bp|location=Sequence derived from alignment at Contig_32:431325..431573- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATAGGGCAGGGGCATCTGGACGCTGTGCTTCTGCCATGGCCCCTGGCGAGback to top protein sequence of jgi.p|Trimin1|155466 >Trimin1|155466|gw1.32.211.1 ID=Trimin1|155466|gw1.32.211.1|Name=jgi.p|Trimin1|155466|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=83bp IGQGHLDAVLLPWPLASSGQRRQTDAATRTRDTARFLDTWQALEKLKQSGback to top mRNA from alignment at Contig_32:431325..431573- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_5206 ID=mRNA_5206|Name=jgi.p|Trimin1|155466|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=249bp|location=Sequence derived from alignment at Contig_32:431325..431573- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_32:431325..431573- >mRNA_5206 ID=mRNA_5206|Name=jgi.p|Trimin1|155466|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=249bp|location=Sequence derived from alignment at Contig_32:431325..431573- (Tribonema minus UTEX_B_3156 )back to top |