mRNA_5206 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|155466
Unique NamemRNA_5206
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|155466 vs. uniprot
Match: A0A835YWV9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWV9_9STRA)

HSP 1 Score: 172 bits (437), Expect = 9.440e-55
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1
Query:    1 IGQGHLDAVLLPWPLASSGQRRQTDAATRTRDTARFLDTWQALEKLKQSGVVKALGVDQCLPWHLDVIQQDLRLSPAANFVFV 249
            IGQGHLDAVLLPWPLASSGQRRQTDAATRTRDTARFLDTWQALEKLKQSGVVKALGVDQCLPWHLDVIQQDLRLSPAANFVFV
Sbjct:    1 IGQGHLDAVLLPWPLASSGQRRQTDAATRTRDTARFLDTWQALEKLKQSGVVKALGVDQCLPWHLDVIQQDLRLSPAANFVFV 83          
BLAST of jgi.p|Trimin1|155466 vs. uniprot
Match: A0A3A9G001_9BACT (Aldo/keto reductase n=1 Tax=bacterium 1XD42-8 TaxID=2320102 RepID=A0A3A9G001_9BACT)

HSP 1 Score: 58.9 bits (141), Expect = 2.170e-8
Identity = 32/77 (41.56%), Postives = 45/77 (58.44%), Query Frame = 1
Query:   13 HLDAVLLPWPLASSGQRRQTDAATRTRDTARFLDTWQALEKLKQSGVVKALGVDQCLPWHLDVIQQDLRLSPAANFV 243
            +LD  L+ WP    GQ++           AR LDTW+A+EKL Q G+V+A+GV  C P HL+ I +  ++ PA N V
Sbjct:  102 YLDLFLIHWP----GQQK-----------ARLLDTWRAMEKLYQDGLVRAIGVCNCEPQHLEWILEKAQIIPAINQV 163          
BLAST of jgi.p|Trimin1|155466 vs. uniprot
Match: A0A5M9I4X2_9FIRM (Aldo/keto reductase n=1 Tax=Mediterraneibacter catenae TaxID=2594882 RepID=A0A5M9I4X2_9FIRM)

HSP 1 Score: 56.6 bits (135), Expect = 1.590e-7
Identity = 28/77 (36.36%), Postives = 43/77 (55.84%), Query Frame = 1
Query:   13 HLDAVLLPWPLASSGQR--RQTDAATRTRDTARFLDTWQALEKLKQSGVVKALGVDQCLPWHLDVIQQDLRLSPAAN 237
            +LD  L+ WPL   G R  +Q D            +TW+A+E L + G ++A+G+   LP+H+D I +D R+ PA N
Sbjct:  108 YLDLYLIHWPLPEPGYREWKQLDR-----------ETWRAMEDLYEEGKIRAIGLSNFLPYHIDNILKDCRVKPAVN 173          
BLAST of jgi.p|Trimin1|155466 vs. uniprot
Match: A0A8H3YBY0_9TREE (Aldo_ket_red domain-containing protein n=1 Tax=Naganishia liquefaciens TaxID=104408 RepID=A0A8H3YBY0_9TREE)

HSP 1 Score: 56.2 bits (134), Expect = 2.330e-7
Identity = 27/86 (31.40%), Postives = 47/86 (54.65%), Query Frame = 1
Query:    1 IGQGHLDAVLLPWPLASSGQRRQTDAATRTRDTAR-------FLDTWQALEKLKQSGVVKALGVDQCLPWHLDVIQQDLRLSPAAN 237
            +G  +LD  L+ WP+  +G+ +         + AR       ++DTW+ +EKL  +G VKA+GV  C   +L+ + +  ++ PAAN
Sbjct:   96 LGTDYLDLYLMHWPIPLNGENKSHPLVPTRANGARDLDEEWSYIDTWKEMEKLVDTGKVKAIGVSNCSVPYLEELLKHAKIVPAAN 181          
BLAST of jgi.p|Trimin1|155466 vs. uniprot
Match: W1I6I6_9BACT (Uncultured bacterium extrachromosomal DNA RGI01730 n=1 Tax=uncultured bacterium TaxID=77133 RepID=W1I6I6_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 2.360e-7
Identity = 28/77 (36.36%), Postives = 44/77 (57.14%), Query Frame = 1
Query:   13 HLDAVLLPWPLASSGQR--RQTDAATRTRDTARFLDTWQALEKLKQSGVVKALGVDQCLPWHLDVIQQDLRLSPAAN 237
            +LD  L+ WP+   G    +Q D           LDTW+A+E+L +SG ++A+G+   LP HL+ + Q+ R+ PA N
Sbjct:   23 YLDLYLIHWPIPEVGYADWKQLD-----------LDTWRAMEELYESGRIRAIGLSNFLPHHLENLLQNARIKPAVN 88          
BLAST of jgi.p|Trimin1|155466 vs. uniprot
Match: A0A2Y9BE08_9FIRM (Aldo/keto reductase n=2 Tax=Eubacteriales TaxID=186802 RepID=A0A2Y9BE08_9FIRM)

HSP 1 Score: 55.5 bits (132), Expect = 4.050e-7
Identity = 28/79 (35.44%), Postives = 44/79 (55.70%), Query Frame = 1
Query:    1 IGQGHLDAVLLPWPLASSGQRRQTDAATRTRDTARFLDTWQALEKLKQSGVVKALGVDQCLPWHLDVIQQDLRLSPAAN 237
            +G  +LD  L+ WPL   G          T   A  LDTW+A+E+L + G+++A+GV   LP H++ I Q+  + PA +
Sbjct:   99 LGTDYLDLYLIHWPLPEPGY---------TDWKALDLDTWKAMEELYKEGLIRAIGVSNFLPHHIENIWQNCEIYPAVD 168          
BLAST of jgi.p|Trimin1|155466 vs. uniprot
Match: UPI001422966D (aldo/keto reductase n=2 Tax=Amycolatopsis TaxID=1813 RepID=UPI001422966D)

HSP 1 Score: 55.1 bits (131), Expect = 5.480e-7
Identity = 28/79 (35.44%), Postives = 40/79 (50.63%), Query Frame = 1
Query:    1 IGQGHLDAVLLPWPLASSGQRRQTDAATRTRDTARFLDTWQALEKLKQSGVVKALGVDQCLPWHLDVIQQDLRLSPAAN 237
            +G  HLD  L+ WP+                D  R++ TW+ALEK+   G V+A+GV    P HLD + Q+  + PA N
Sbjct:   98 LGLDHLDLYLIHWPVP---------------DADRYVGTWRALEKVHAEGRVRAIGVSNFQPHHLDRLAQESDIVPAVN 161          
BLAST of jgi.p|Trimin1|155466 vs. uniprot
Match: A0A371AUT1_9FIRM (Aldo/keto reductase n=1 Tax=Anaerosacchariphilus polymeriproducens TaxID=1812858 RepID=A0A371AUT1_9FIRM)

HSP 1 Score: 55.1 bits (131), Expect = 5.580e-7
Identity = 26/79 (32.91%), Postives = 41/79 (51.90%), Query Frame = 1
Query:    1 IGQGHLDAVLLPWPLASSGQRRQTDAATRTRDTARFLDTWQALEKLKQSGVVKALGVDQCLPWHLDVIQQDLRLSPAAN 237
            +   ++D  L+ WP A                  + LDTW+A+E+  ++G+VKA+GV   LP HLDVI +  ++ P  N
Sbjct:   96 LQMNYIDVYLVHWPKADIQDENWK---------VKLLDTWKAMEECYEAGLVKAIGVSNFLPHHLDVIMEKAKVQPMIN 165          
BLAST of jgi.p|Trimin1|155466 vs. uniprot
Match: A0A4Y9F362_9MICC (Aldo/keto reductase n=10 Tax=Rothia nasimurium TaxID=85336 RepID=A0A4Y9F362_9MICC)

HSP 1 Score: 54.7 bits (130), Expect = 7.450e-7
Identity = 27/79 (34.18%), Postives = 44/79 (55.70%), Query Frame = 1
Query:    1 IGQGHLDAVLLPWPLASSGQRRQTDAATRTRDTARFLDTWQALEKLKQSGVVKALGVDQCLPWHLDVIQQDLRLSPAAN 237
            +G  +LDA L+ WP  S G                ++DTW+AL K ++ G+VK++GV   LP H+D + ++  ++PA N
Sbjct:   95 MGFDYLDAYLIHWPNPSQGL---------------YVDTWRALIKAQEEGLVKSIGVSNFLPEHIDRLIEETGVTPAIN 158          
BLAST of jgi.p|Trimin1|155466 vs. uniprot
Match: F6FR87_ISOV2 (2,5-didehydrogluconate reductase n=1 Tax=Isoptericola variabilis (strain 225) TaxID=743718 RepID=F6FR87_ISOV2)

HSP 1 Score: 54.7 bits (130), Expect = 7.650e-7
Identity = 29/83 (34.94%), Postives = 43/83 (51.81%), Query Frame = 1
Query:    1 IGQGHLDAVLLPWPLASSGQRRQTDAATRTRDTARFLDTWQALEKLKQSGVVKALGVDQCLPWHLDVIQQDLRLSPAANFVFV 249
            +G  ++D  L+ WP+ S                  +++TW+A EKL + GVVKA+GV   LP HLD +  +  + PA N V V
Sbjct:   97 LGLDYVDLYLIHWPVPSKDL---------------YVETWKAFEKLLEEGVVKAIGVSNFLPEHLDRLVSETDVVPAVNQVEV 164          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|155466 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YWV9_9STRA9.440e-55100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A3A9G001_9BACT2.170e-841.56Aldo/keto reductase n=1 Tax=bacterium 1XD42-8 TaxI... [more]
A0A5M9I4X2_9FIRM1.590e-736.36Aldo/keto reductase n=1 Tax=Mediterraneibacter cat... [more]
A0A8H3YBY0_9TREE2.330e-731.40Aldo_ket_red domain-containing protein n=1 Tax=Nag... [more]
W1I6I6_9BACT2.360e-736.36Uncultured bacterium extrachromosomal DNA RGI01730... [more]
A0A2Y9BE08_9FIRM4.050e-735.44Aldo/keto reductase n=2 Tax=Eubacteriales TaxID=18... [more]
UPI001422966D5.480e-735.44aldo/keto reductase n=2 Tax=Amycolatopsis TaxID=18... [more]
A0A371AUT1_9FIRM5.580e-732.91Aldo/keto reductase n=1 Tax=Anaerosacchariphilus p... [more]
A0A4Y9F362_9MICC7.450e-734.18Aldo/keto reductase n=10 Tax=Rothia nasimurium Tax... [more]
F6FR87_ISOV27.650e-734.942,5-didehydrogluconate reductase n=1 Tax=Isopteric... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_32contigContig_32:431325..431573 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|155466|gw1.32.211.1
Max annot lvl2759|Eukaryota
EggNOG OGs2EV49@1|root,2SX5Z@2759|Eukaryota
Evalue6.69e-17
Seed ortholog2880.D8LPR7
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNADP-dependent oxidoreductase domain
Ec32 orthologEc-18_002210.1
TranscriptId155788
TrackFilteredModels1
ProteinId155466
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|155466gene_5206Tribonema minus UTEX_B_3156 geneContig_32 431325..431573 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5206_1exon_5206_1Tribonema minus UTEX_B_3156 exonContig_32 431325..431573 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5206CDS_5206Tribonema minus UTEX_B_3156 CDSContig_32 431325..431573 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|155466Trimin1|155466|gw1.32.211.1Tribonema minus UTEX_B_3156 polypeptideContig_32 431325..431573 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5206 ID=mRNA_5206|Name=jgi.p|Trimin1|155466|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=249bp|location=Sequence derived from alignment at Contig_32:431325..431573- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATAGGGCAGGGGCATCTGGACGCTGTGCTTCTGCCATGGCCCCTGGCGAG
CAGTGGTCAACGACGACAAACAGATGCAGCCACGCGCACACGCGACACCG
CTCGCTTCCTGGACACCTGGCAAGCCTTGGAGAAGTTGAAACAGAGTGGC
GTTGTCAAGGCGCTGGGTGTAGATCAGTGCCTGCCGTGGCACCTGGACGT
GATCCAGCAGGACCTGCGCCTGAGCCCTGCTGCAAACTTTGTCTTCGTG
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protein sequence of jgi.p|Trimin1|155466

>Trimin1|155466|gw1.32.211.1 ID=Trimin1|155466|gw1.32.211.1|Name=jgi.p|Trimin1|155466|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=83bp
IGQGHLDAVLLPWPLASSGQRRQTDAATRTRDTARFLDTWQALEKLKQSG
VVKALGVDQCLPWHLDVIQQDLRLSPAANFVFV
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mRNA from alignment at Contig_32:431325..431573-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5206 ID=mRNA_5206|Name=jgi.p|Trimin1|155466|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=249bp|location=Sequence derived from alignment at Contig_32:431325..431573- (Tribonema minus UTEX_B_3156 )
ATAGGGCAGGGGCATCTGGACGCTGTGCTTCTGCCATGGCCCCTGGCGAG CAGTGGTCAACGACGACAAACAGATGCAGCCACGCGCACACGCGACACCG CTCGCTTCCTGGACACCTGGCAAGCCTTGGAGAAGTTGAAACAGAGTGGC GTTGTCAAGGCGCTGGGTGTAGATCAGTGCCTGCCGTGGCACCTGGACGT GATCCAGCAGGACCTGCGCCTGAGCCCTGCTGCAAACTTTGTCTTCGTG
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Coding sequence (CDS) from alignment at Contig_32:431325..431573-

>mRNA_5206 ID=mRNA_5206|Name=jgi.p|Trimin1|155466|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=249bp|location=Sequence derived from alignment at Contig_32:431325..431573- (Tribonema minus UTEX_B_3156 )
ATAGGGCAGGGGCATCTGGACGCTGTGCTTCTGCCATGGCCCCTGGCGAG
CAGTGGTCAACGACGACAAACAGATGCAGCCACGCGCACACGCGACACCG
CTCGCTTCCTGGACACCTGGCAAGCCTTGGAGAAGTTGAAACAGAGTGGC
GTTGTCAAGGCGCTGGGTGTAGATCAGTGCCTGCCGTGGCACCTGGACGT
GATCCAGCAGGACCTGCGCCTGAGCCCTGCTGCAAACTTTGTCTTCGTG
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