mRNA_19009 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|354625
Unique NamemRNA_19009
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|354625 vs. uniprot
Match: A0A836CED3_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CED3_9STRA)

HSP 1 Score: 400 bits (1027), Expect = 1.160e-138
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 1 
Query:    1 METHAFITSTSKLALTQDRSTAESWTNGKVFKRRQQDGNVTERSDGSVPKRSGGMMEATMKRVTCKQILPPAQAAVDASDLYPSDPLDVSLASPRAIVNDVKELLGASVRAYEGRTADDIADKLYDDLRDVRAVELGDNGTDSYWLCLQILKPVRTDTLMTNVRAVLRVVDEASGWTLSWGNEVRVIKRKVDKLLEAEANGGGLDG 618
            METHAFITSTSKLALTQDRSTAESWTNGKVFKRRQQDGNVTERSDGSVPKRSGGMMEATMKRVTCKQILPPAQAAVDASDLYPSDPLDVSLASPRAIVNDVKELLGASVRAYEGRTADDIADKLYDDLRDVRAVELGDNGTDSYWLCLQILKPVRTDTLMTNVRAVLRVVDEASGWTLSWGNEVRVIKRKVDKLLEAEANGGGLDG
Sbjct:    1 METHAFITSTSKLALTQDRSTAESWTNGKVFKRRQQDGNVTERSDGSVPKRSGGMMEATMKRVTCKQILPPAQAAVDASDLYPSDPLDVSLASPRAIVNDVKELLGASVRAYEGRTADDIADKLYDDLRDVRAVELGDNGTDSYWLCLQILKPVRTDTLMTNVRAVLRVVDEASGWTLSWGNEVRVIKRKVDKLLEAEANGGGLDG 206
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BLAST of jgi.p|Trimin1|354625 vs. uniprot
Match: A0A836CQ92_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQ92_9STRA)

HSP 1 Score: 197 bits (502), Expect = 2.920e-60
Identity = 112/143 (78.32%), Postives = 113/143 (79.02%), Query Frame = 1 
Query:    1 METHAFITSTSKLALTQDRSTAESWTNGKVFKRRQQDGNVTERSDGSVPKRSGGMMEATMKRVTCKQILPPAQAAVDASDLYPSDPLDVSLASPRAIVNDVKELLGASVRAYEGRTADDIADKLYDDLRDVRAVELGDNGTDS 429
            METHAFITSTSKLALTQDRSTAESWTNGKVFKRRQQDGNVTERSDGSVPKRSGGMMEATMKRVTCKQILPPAQ                             ELLGASVRA EGRTADDIADKLYDDLRDVRAVELG+NGTDS
Sbjct:    1 METHAFITSTSKLALTQDRSTAESWTNGKVFKRRQQDGNVTERSDGSVPKRSGGMMEATMKRVTCKQILPPAQ-----------------------------ELLGASVRACEGRTADDIADKLYDDLRDVRAVELGENGTDS 114
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354625 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CED3_9STRA1.160e-138100.00Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A836CQ92_9STRA2.920e-6078.32Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_300contigContig_300:4619..7469 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|354625|estExt_Genemark1.C_Ctg_3000002
Hectar predicted targeting categoryother localisation
TranscriptId354947
TrackFilteredModels1
ProteinId354625
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354625gene_19009Tribonema minus UTEX_B_3156 geneContig_300 4619..7469 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354625Trimin1|354625|estExt_Genemark1.C_Ctg_3000002Tribonema minus UTEX_B_3156 polypeptideContig_300 4984..7469 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_19009_5exon_19009_5Tribonema minus UTEX_B_3156 exonContig_300 4619..5050 -
exon_19009_4exon_19009_4Tribonema minus UTEX_B_3156 exonContig_300 5089..5336 -
exon_19009_3exon_19009_3Tribonema minus UTEX_B_3156 exonContig_300 6215..6236 -
exon_19009_2exon_19009_2Tribonema minus UTEX_B_3156 exonContig_300 6718..6782 -
exon_19009_1exon_19009_1Tribonema minus UTEX_B_3156 exonContig_300 7251..7469 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_19009UTR3_19009Tribonema minus UTEX_B_3156 three_prime_UTRContig_300 4619..4983 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_19009CDS_19009Tribonema minus UTEX_B_3156 CDSContig_300 7251..7469 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_19009 ID=mRNA_19009|Name=jgi.p|Trimin1|354625|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=986bp|location=Sequence derived from alignment at Contig_300:4619..7469- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGACCCACGCCTTCATCACCTCAACCTCAAAGCTGGCGCTGACACA
AGACCGCAGCACTGCGGAGTCCTGGACCAACGGCAAGGTCTTTAAGCGCA
GACAGCAGGACGGCAACGTCACGGAACGCAGCGACGGCAGCGTGCCGAAA
CGCAGCGGCGGCATGATGGAGGCGACCATGAAGCGCGTGACGTGCAAGCA
GATACTGCCACCAGCACAGGCCGCCGTCGACGCCTCTGACTTGTACCCAT
CCGACCCACTTGATGTGTCGCTCGCCAGTCCTCGCGCCATCGTTAATGAT
GTCAAGGAGCTGCTCGGTGCATCTGTTCGGGCATATGAGGGGCGGACAGC
GGACGACATAGCAGACAAACTGTACGATGACCTGCGGGACGTCAGGGCTG
TGGAGCTGGGAGACAATGGGACCGACTCGTACTGGTTGTGCTTGCAGATT
CTCAAACCTGTGCGGACAGACACCCTCATGACCAACGTTCGGGCCGTTCT
GAGAGTGGTGGATGAGGCGAGCGGCTGGACATTGTCATGGGGCAACGAGG
TGAGGGTCATCAAGCGGAAGGTGGACAAGCTGCTGGAGGCGGAGGCAAAC
GGAGGCGGGCTTGATGGTTAGAGCGCTGACGAGCTTCGCAGCGTCGTTGA
GCGCCTCAGCAAAGATAAGAAGCAGCTTGAAAGTCAGCTTTCGACTGCAA
CAGCTGACAATCAGTTCATGACGACATGGATGCGTTTTGCACCCCACTTG
TCCTATGAGACAATGGTGGAGTGGAAGGTTAAATTGTTTGAAGAGGGTGC
TGAATACATAGGACACGAGAAAGAGTTTTGGGCTGAGGTGTCAAAGGGAA
AGACTTGTGATCATCAGGCCATGGTCAGCTTAGTCATGGAATACATTTTG
AGCCTGGTAGATTTTGATGAGTCCAGGCTCTCTGACTACGGCGACAGGCT
CTCTGACTACGGCGACTGTTAGACGGGGTTGACAAT
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protein sequence of jgi.p|Trimin1|354625

>Trimin1|354625|estExt_Genemark1.C_Ctg_3000002 ID=Trimin1|354625|estExt_Genemark1.C_Ctg_3000002|Name=jgi.p|Trimin1|354625|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=207bp
METHAFITSTSKLALTQDRSTAESWTNGKVFKRRQQDGNVTERSDGSVPK
RSGGMMEATMKRVTCKQILPPAQAAVDASDLYPSDPLDVSLASPRAIVND
VKELLGASVRAYEGRTADDIADKLYDDLRDVRAVELGDNGTDSYWLCLQI
LKPVRTDTLMTNVRAVLRVVDEASGWTLSWGNEVRVIKRKVDKLLEAEAN
GGGLDG*
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mRNA from alignment at Contig_300:4619..7469-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_19009 ID=mRNA_19009|Name=jgi.p|Trimin1|354625|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2851bp|location=Sequence derived from alignment at Contig_300:4619..7469- (Tribonema minus UTEX_B_3156 )
ATGGAGACCCACGCCTTCATCACCTCAACCTCAAAGCTGGCGCTGACACA
AGACCGCAGCACTGCGGAGTCCTGGACCAACGGCAAGGTCTTTAAGCGCA
GACAGCAGGACGGCAACGTCACGGAACGCAGCGACGGCAGCGTGCCGAAA
CGCAGCGGCGGCATGATGGAGGCGACCATGAAGCGCGTGACGTGCAAGCA
GATACTGCCACCAGCACAGGTGAACATCAACCCTTTACATTGAGCAGGTC
TGTTGCAATTATTATTATACCGTCAGCATGACAAGCGTTTCGCAGCCAGA
TGAAGTTAGATTGAGTCCTGAAAGTTGCCTACATGTCGTCTCCCTGACCT
GTTCAGCGGCACAAACTTAGCGCTGTAGAAAGTTGACCGGAAGCTTTTCC
ACATGATGACCATTGCTGATACGCTCTGGAAGACCAGAAAGCGGAAGATT
ACTACATCTTCTATCTTTACGGCGCTTTGCTCGGCCTCCCTCAGCAGGCG
TGGATTTGAACACGTCCTCGAGCGGAATGGTGCTCAAGTCAGGCCACCCT
TTCTTGCCCGTCAATATCTCTATACTGTGCTCGATGGCAAATCTCTCCTT
GAGTGGTGCGATGGATTTACGCCGAAGGGTCGAGGCCTGCACAACACGTT
GTGACTGCACAAGAAACAATGTCTGCACGAATTCGAGGCCGCCGTCGACG
CCTCTGACTTGTACCCATCCGACCCACTTGATGTGTCGCTCGCCAGTCCT
CGGTTCGAACTCGAGCAGGGAGTTAGCGAAGGCCCCTCATCTCACTTTGA
AACTCGTGTCCGCTGGAGTTAGCACTAATCTTGCGTTAAACTTGCGGCCT
TGTCTATCGTCGGCGGGGGGTGCGAGGTGTGTCCGAACCCTGGTGCGCTT
GGGTTTGTCCATGCTGCTGGCACCTGCAGAATGTGTTTGGAGGTTGATGA
AGCTGAGCCTAGCACTTCAGCCTCTGTGACTGGTGTATACGATACCGAGT
GAGTGCGAGCGCCGATGAACATCCTTAATCGGTAGCAAAGCATTCTTGCT
GAAGCAGTCATCAAAAGCGAAGTTCAACGCTACTCGTCCTTTTGGACAGC
CAATCCCATTGCCATCAAGAACAGCGATAGCGCAGCAGCAGCAGCACACC
AGCAACTGCCACTGTTGAACACCTCTCTTGCACTGCTGCTGCTGGAGCAT
GCTGCTGGTGCTCGCGCCGCTGCTATTGTGTAGCGCCATCGTTAATGATG
TCAAGGTAGCGCCGGCAAGCCCTGCTGCTTGTGCGCAGCTGCGCAATCTG
GGTTGGCCTCAACTCACAAGCCGTTGACAGTTGCAGTTGTCTGCAGGTGC
AGCCAGGCTCACCTGCACACCACACCCTCCAGTGCTCCCTTTCAACAGCG
TCAGTGCTTTCACGCCTTGGTCTGCTCCATGCACCTCTAAGCTCCTCTCG
TAAAGTCTGCTGCTGCCCTTGTCAGTAAATGAGCCCGGGTACCCCAGCGG
AATCGGTAACGCAAAGAACGAACGGATTCCGTTGATTGCTTCACCCCTGC
AGCACAACAGCTTGTGCCTGCCTGTGGTATTTCCTGAAAAAAGGAATTAC
AGCAGCAGATGGCAGTAGCACAAGCAGCAGACACGCCAAAGCGCACCAGC
AACGCAACGGCCCACAACAGCGCAGGATTAGCAGCAGCAGCAGCAGTGCA
CCCAAACAACAGCGCATAACACCAGCGCTACCACAGCAGCGCAGCAGCCA
GCAGCAGCGCAGCAGCAGCAGCATAGGCAGCAGCAGCGCAGTAATACAAC
AGTACTGCAGCTCACACCAGCAGCACCAGCGCCACACCAGCTGCTGCAGG
TCAGCAGCAGCCCCACCTGGTGAGCACAAGCACAGCGTCCATGCGTCATC
TGTGGCTGTTTCAGTCTGATAAGGTGCTACTGCCGTCGCAGTGGCTACTG
CACGTTGGCAGTCCGAAAAAGAGTAGTATCAGCGCCAACTGCGAGCTGGA
TGTCCTTGACAAGTGCGGTGTTGTCGTCTCACCATGAGTCCCCATGATGT
TGCTCTGCCGCAGGTGTGTTGCCTTGACACACACTCATTTAAGAGCAGTA
TCAGAGTGAGAGATGGCCGATGGCCTCCGCAAGGAGCTGCTCGGTGCATC
TGTTCGGGCATATGAGGGGCGGACAGCGGACGACATAGCAGACAAACTGT
ACGATGACCTGCGGGACGTCAGGGCTGTGGAGCTGGGAGACAATGGGACC
GACTCGTACTGGTTGTGCTTGCAGATTCTCAAACCTGTGCGGACAGACAC
CCTCATGACCAACGTTCGGGCCGTTCTGAGAGTGGTGGATGAGGCGAGCG
GCTGGACATTGTCATGGGGCAACGAGGTGAGGTGGCGAGCAGAGGCGAGC
GGGTGCGATCGGGGCCTAGGGTCATCAAGCGGAAGGTGGACAAGCTGCTG
GAGGCGGAGGCAAACGGAGGCGGGCTTGATGGTTAGAGCGCTGACGAGCT
TCGCAGCGTCGTTGAGCGCCTCAGCAAAGATAAGAAGCAGCTTGAAAGTC
AGCTTTCGACTGCAACAGCTGACAATCAGTTCATGACGACATGGATGCGT
TTTGCACCCCACTTGTCCTATGAGACAATGGTGGAGTGGAAGGTTAAATT
GTTTGAAGAGGGTGCTGAATACATAGGACACGAGAAAGAGTTTTGGGCTG
AGGTGTCAAAGGGAAAGACTTGTGATCATCAGGCCATGGTCAGCTTAGTC
ATGGAATACATTTTGAGCCTGGTAGATTTTGATGAGTCCAGGCTCTCTGA
CTACGGCGACAGGCTCTCTGACTACGGCGACTGTTAGACGGGGTTGACAA
T
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Coding sequence (CDS) from alignment at Contig_300:4619..7469-

>mRNA_19009 ID=mRNA_19009|Name=jgi.p|Trimin1|354625|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=621bp|location=Sequence derived from alignment at Contig_300:4619..7469- (Tribonema minus UTEX_B_3156 )
ATGGAGACCCACGCCTTCATCACCTCAACCTCAAAGCTGGCGCTGACACA
AGACCGCAGCACTGCGGAGTCCTGGACCAACGGCAAGGTCTTTAAGCGCA
GACAGCAGGACGGCAACGTCACGGAACGCAGCGACGGCAGCGTGCCGAAA
CGCAGCGGCGGCATGATGGAGGCGACCATGAAGCGCGTGACGTGCAAGCA
GATACTGCCACCAGCACAGGCCGCCGTCGACGCCTCTGACTTGTACCCAT
CCGACCCACTTGATGTGTCGCTCGCCAGTCCTCGCGCCATCGTTAATGAT
GTCAAGGAGCTGCTCGGTGCATCTGTTCGGGCATATGAGGGGCGGACAGC
GGACGACATAGCAGACAAACTGTACGATGACCTGCGGGACGTCAGGGCTG
TGGAGCTGGGAGACAATGGGACCGACTCGTACTGGTTGTGCTTGCAGATT
CTCAAACCTGTGCGGACAGACACCCTCATGACCAACGTTCGGGCCGTTCT
GAGAGTGGTGGATGAGGCGAGCGGCTGGACATTGTCATGGGGCAACGAGG
TGAGGGTCATCAAGCGGAAGGTGGACAAGCTGCTGGAGGCGGAGGCAAAC
GGAGGCGGGCTTGATGGTTAG
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