Trimin1|354625|estExt_Genemark1.C_Ctg_3000002 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|354625
Unique Name	Trimin1\|354625\|estExt_Genemark1.C_Ctg_3000002
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	207

Homology

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BLAST of jgi.p|Trimin1|354625 vs. uniprot
Match: A0A836CED3_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CED3_9STRA)

HSP 1 Score: 400 bits (1027), Expect = 1.000e-140
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0

Query:    1 METHAFITSTSKLALTQDRSTAESWTNGKVFKRRQQDGNVTERSDGSVPKRSGGMMEATMKRVTCKQILPPAQAAVDASDLYPSDPLDVSLASPRAIVNDVKELLGASVRAYEGRTADDIADKLYDDLRDVRAVELGDNGTDSYWLCLQILKPVRTDTLMTNVRAVLRVVDEASGWTLSWGNEVRVIKRKVDKLLEAEANGGGLDG 206
            METHAFITSTSKLALTQDRSTAESWTNGKVFKRRQQDGNVTERSDGSVPKRSGGMMEATMKRVTCKQILPPAQAAVDASDLYPSDPLDVSLASPRAIVNDVKELLGASVRAYEGRTADDIADKLYDDLRDVRAVELGDNGTDSYWLCLQILKPVRTDTLMTNVRAVLRVVDEASGWTLSWGNEVRVIKRKVDKLLEAEANGGGLDG
Sbjct:    1 METHAFITSTSKLALTQDRSTAESWTNGKVFKRRQQDGNVTERSDGSVPKRSGGMMEATMKRVTCKQILPPAQAAVDASDLYPSDPLDVSLASPRAIVNDVKELLGASVRAYEGRTADDIADKLYDDLRDVRAVELGDNGTDSYWLCLQILKPVRTDTLMTNVRAVLRVVDEASGWTLSWGNEVRVIKRKVDKLLEAEANGGGLDG 206

[Close]

BLAST of jgi.p|Trimin1|354625 vs. uniprot
Match: A0A836CQ92_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQ92_9STRA)

HSP 1 Score: 197 bits (502), Expect = 4.970e-62
Identity = 112/143 (78.32%), Postives = 113/143 (79.02%), Query Frame = 0

Query:    1 METHAFITSTSKLALTQDRSTAESWTNGKVFKRRQQDGNVTERSDGSVPKRSGGMMEATMKRVTCKQILPPAQAAVDASDLYPSDPLDVSLASPRAIVNDVKELLGASVRAYEGRTADDIADKLYDDLRDVRAVELGDNGTDS 143
            METHAFITSTSKLALTQDRSTAESWTNGKVFKRRQQDGNVTERSDGSVPKRSGGMMEATMKRVTCKQILPPAQ                             ELLGASVRA EGRTADDIADKLYDDLRDVRAVELG+NGTDS
Sbjct:    1 METHAFITSTSKLALTQDRSTAESWTNGKVFKRRQQDGNVTERSDGSVPKRSGGMMEATMKRVTCKQILPPAQ-----------------------------ELLGASVRACEGRTADDIADKLYDDLRDVRAVELGENGTDS 114

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|354625 vs. uniprot

BLAST of jgi.p|Trimin1|354625 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A836CED3_9STRA	1.000e-140	100.00	Uncharacterized protein n=2 Tax=Tribonema minus Ta...	[more]
A0A836CQ92_9STRA	4.970e-62	78.32	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..52

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_300	contig	Contig_300:4984..7469 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|354625	mRNA_19009	Tribonema minus UTEX_B_3156	mRNA	Contig_300 4619..7469 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|354625|estExt_Genemark1.C_Ctg_3000002 ID=Trimin1|354625|estExt_Genemark1.C_Ctg_3000002|Name=jgi.p|Trimin1|354625|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=207bp
METHAFITSTSKLALTQDRSTAESWTNGKVFKRRQQDGNVTERSDGSVPK
RSGGMMEATMKRVTCKQILPPAQAAVDASDLYPSDPLDVSLASPRAIVND
VKELLGASVRAYEGRTADDIADKLYDDLRDVRAVELGDNGTDSYWLCLQI
LKPVRTDTLMTNVRAVLRVVDEASGWTLSWGNEVRVIKRKVDKLLEAEAN
GGGLDG*