Trimin1|348660|estExt_Genemark1.C_Ctg_290114 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|348660
Unique Name	Trimin1\|348660\|estExt_Genemark1.C_Ctg_290114
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	242

Homology

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BLAST of jgi.p|Trimin1|348660 vs. uniprot
Match: A0A835Z0K3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0K3_9STRA)

HSP 1 Score: 469 bits (1207), Expect = 5.280e-167
Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 0

Query:    1 MSSPSQSDEELLQPTAAELVSKKGHRRKLLAAAAGLAVCLTLGAYQFLFEENIADGILLEPPDRLAEAGSLSARLRSFAATSFSLRRFVLEVNAPMDVFVYGTYIAGVPQDEENVELLRGLATAFVLEPFVEIPRMMWQWQSIRNSLDMATAYADARGSPYAAVVRSRPDTVYLTPLHLDALLSKYLDLGLYRPYFAAQGFKSDAELNLTAEVSQPVLAVSKVALPAFFPSCEGFDGVTDR 241
            MSSPSQSDEELLQPTAAELVSKKGHRRKLLAAAAGLAVCLTLGAYQFLFEENIADGILLEPPDRLAEAGSLSARLRSFAATSFSLRRFVLEVNAPMDVFVYGTYIAGVPQDEENVELLRGLATAFVLEPFVEIPRMMWQWQSIRNSLDMATAYADARGSPYAAVVRSRPDTVYLTPLHLDALLSKYLDLGLYRPYFAAQGFKSDAELNLTAEVSQPVLAVSKVALPAFFPSCEGFDGVTDR
Sbjct:    1 MSSPSQSDEELLQPTAAELVSKKGHRRKLLAAAAGLAVCLTLGAYQFLFEENIADGILLEPPDRLAEAGSLSARLRSFAATSFSLRRFVLEVNAPMDVFVYGTYIAGVPQDEENVELLRGLATAFVLEPFVEIPRMMWQWQSIRNSLDMATAYADARGSPYAAVVRSRPDTVYLTPLHLDALLSKYLDLGLYRPYFAAQGFKSDAELNLTAEVSQPVLAVSKVALPAFFPSCEGFDGVTDR 241

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BLAST of jgi.p|Trimin1|348660 vs. uniprot
Match: A0A835YGX0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGX0_9STRA)

HSP 1 Score: 226 bits (577), Expect = 6.030e-69
Identity = 113/162 (69.75%), Postives = 138/162 (85.19%), Query Frame = 0

Query:   71 LSARLRSFAATSFSLRRFVLEVNAPMDVFVYGTYIAGVPQDEENVELLRGLATAFVLEPFVEIP-RMMWQWQSIRNSLDMATAYADARGSPYAAVVRSRPDTVYLTPLHLDALLSKYLDLGLYRPYFAAQGFKSDAELNLTAEVSQPVLAVSKVALPAFFPS 231
            LS  LRSFAA+SFSLR F+L+VNAP+DVFVYG+Y AGVPQDEEN+ELLRG+ATAFVLEPF  IP RM+WQW +IRN+L+MATAYADARG PY A+VR+RPDTVYLTPLHLD LLS+  ++ L+RPYF A  +KS+AELN +A++ +PVL+ +    PAFFPS
Sbjct:  103 LSGGLRSFAASSFSLRAFILDVNAPIDVFVYGSYDAGVPQDEENLELLRGVATAFVLEPFRFIPTRMIWQWSAIRNALEMATAYADARGRPYDAIVRARPDTVYLTPLHLDTLLSRDREVELHRPYFRAHAWKSNAELNASADIPRPVLSTA----PAFFPS 260

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|348660 vs. uniprot

BLAST of jgi.p|Trimin1|348660 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835Z0K3_9STRA	5.280e-167	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835YGX0_9STRA	6.030e-69	69.75	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_29	contig	Contig_29:962742..965596 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|348660	mRNA_9613	Tribonema minus UTEX_B_3156	mRNA	Contig_29 962742..965596 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|348660|estExt_Genemark1.C_Ctg_290114 ID=Trimin1|348660|estExt_Genemark1.C_Ctg_290114|Name=jgi.p|Trimin1|348660|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=242bp
MSSPSQSDEELLQPTAAELVSKKGHRRKLLAAAAGLAVCLTLGAYQFLFE
ENIADGILLEPPDRLAEAGSLSARLRSFAATSFSLRRFVLEVNAPMDVFV
YGTYIAGVPQDEENVELLRGLATAFVLEPFVEIPRMMWQWQSIRNSLDMA
TAYADARGSPYAAVVRSRPDTVYLTPLHLDALLSKYLDLGLYRPYFAAQG
FKSDAELNLTAEVSQPVLAVSKVALPAFFPSCEGFDGVTDR*