mRNA_9613 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|348660 vs. uniprot
Match: A0A835Z0K3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0K3_9STRA) HSP 1 Score: 469 bits (1207), Expect = 5.280e-167 Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 1
Query: 1 MSSPSQSDEELLQPTAAELVSKKGHRRKLLAAAAGLAVCLTLGAYQFLFEENIADGILLEPPDRLAEAGSLSARLRSFAATSFSLRRFVLEVNAPMDVFVYGTYIAGVPQDEENVELLRGLATAFVLEPFVEIPRMMWQWQSIRNSLDMATAYADARGSPYAAVVRSRPDTVYLTPLHLDALLSKYLDLGLYRPYFAAQGFKSDAELNLTAEVSQPVLAVSKVALPAFFPSCEGFDGVTDR 723
MSSPSQSDEELLQPTAAELVSKKGHRRKLLAAAAGLAVCLTLGAYQFLFEENIADGILLEPPDRLAEAGSLSARLRSFAATSFSLRRFVLEVNAPMDVFVYGTYIAGVPQDEENVELLRGLATAFVLEPFVEIPRMMWQWQSIRNSLDMATAYADARGSPYAAVVRSRPDTVYLTPLHLDALLSKYLDLGLYRPYFAAQGFKSDAELNLTAEVSQPVLAVSKVALPAFFPSCEGFDGVTDR
Sbjct: 1 MSSPSQSDEELLQPTAAELVSKKGHRRKLLAAAAGLAVCLTLGAYQFLFEENIADGILLEPPDRLAEAGSLSARLRSFAATSFSLRRFVLEVNAPMDVFVYGTYIAGVPQDEENVELLRGLATAFVLEPFVEIPRMMWQWQSIRNSLDMATAYADARGSPYAAVVRSRPDTVYLTPLHLDALLSKYLDLGLYRPYFAAQGFKSDAELNLTAEVSQPVLAVSKVALPAFFPSCEGFDGVTDR 241
BLAST of jgi.p|Trimin1|348660 vs. uniprot
Match: A0A835YGX0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGX0_9STRA) HSP 1 Score: 226 bits (577), Expect = 6.030e-69 Identity = 113/162 (69.75%), Postives = 138/162 (85.19%), Query Frame = 1
Query: 211 LSARLRSFAATSFSLRRFVLEVNAPMDVFVYGTYIAGVPQDEENVELLRGLATAFVLEPFVEIP-RMMWQWQSIRNSLDMATAYADARGSPYAAVVRSRPDTVYLTPLHLDALLSKYLDLGLYRPYFAAQGFKSDAELNLTAEVSQPVLAVSKVALPAFFPS 693
LS LRSFAA+SFSLR F+L+VNAP+DVFVYG+Y AGVPQDEEN+ELLRG+ATAFVLEPF IP RM+WQW +IRN+L+MATAYADARG PY A+VR+RPDTVYLTPLHLD LLS+ ++ L+RPYF A +KS+AELN +A++ +PVL+ + PAFFPS
Sbjct: 103 LSGGLRSFAASSFSLRAFILDVNAPIDVFVYGSYDAGVPQDEENLELLRGVATAFVLEPFRFIPTRMIWQWSAIRNALEMATAYADARGRPYDAIVRARPDTVYLTPLHLDTLLSRDREVELHRPYFRAHAWKSNAELNASADIPRPVLSTA----PAFFPS 260
BLAST of jgi.p|Trimin1|348660 vs. uniprot
Match: A0A835Z267_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z267_9STRA) HSP 1 Score: 1921 bits (4976), Expect = 0.000e+0 Identity = 1292/1292 (100.00%), Postives = 1292/1292 (100.00%), Query Frame = 1
Query: 1 MSSVPASTVDDSEEVRVLFAAADAGRTDILKAAIDAIAAKHADNPSGCLRSDPGVVAAAGPLRGKKAYAVGSPLVKAAFGQELFQQVAQGSTERVRALLDNGVDVQSLDGSPSRDTALHWAALFGHAGVAALLLDRGADAGAANADGLTPLQEXXXXXXXXXXXXXXXXXXXXXARGXXXXXXXXXXLGAGMSPAEMNAASLLDASARXXXXXXXXXXXXXXXXXXXXXXXXXXPVSEVSEEALVERRXSSSGSAGLQHPLPVPEQAADSDAARAPRQRQPLPHLPAPSTNALALLWPPPERCCLVPGETCLLAASSSGGXXXXXXXXXRGPVLLVLGQGVAASVAELIQATALIAGAERCRAPPPRIMRARTPLLSDGIAVEGADAAGLLYAANTLEQIIRLYGRRRAAAAGSQPAGGALLLPAVTIEDAPALLRRAVTLDLRLPHTPSLARALAFIWRAAAWRYNALVLQVDGRTVAALAQRDARGALPPPGARGSDPQHATAALSWGWSELAEIQACCSANCMDAVVRWHPELQDLENGSRQGSIQALADFVQQLDSAEVLLDLTRLDRRAAAAADSAHXXXXXXXXXXXXXXXLAPGLEDHISDYIRDVRAVLAACGCDSVVLAGLAWDEVDALRAVLSSEDGAVRCSFVAPDKVAVLRAVLSAGXXXXXXXFAPALPPSEAALASMAAHHRSALCAGAPAYFTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRGAPPHLRPELLERAAAFCAAGALWSARGEGARLLQHCLSAAASPDSADSKAVLGSLLSAHVLHAGTVAPVSAADGGITPAAVAGLIGALLPISSXXXXXXXXXXXXXXXXXXXXXXXLSAAWSLLCAPMHAHTDGAYSSDAAAADSGSXXXXXXXXXXXAVGVGSSGLSDVMVYLGMRDMEHLRELRLRLADMSRLLASLKAHPLVRQLDATASLLRLACRTLLMAGHYAAPAAGGREGSDQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAALPMRLGDAVACVPSSVRLDLANRYLREYELVCNAASRSSAIFNGGTGKLKSASATGKRGSAGASVNGDTTGTSNGSSGGSPDTALSPSDLQQCYRALLAVVDLLTGADAPQRSNGDVCAGVVFGGNSAPVIDRLNDQRVGMGVGWHRRHSFSIRGPPPAHPPHSLLDDWWNALKNKAPRVSCLWLVRQSDQLLIHVQNTMQVSKNELRKILTTIAGRPVELHSKTWKDM 3876
MSSVPASTVDDSEEVRVLFAAADAGRTDILKAAIDAIAAKHADNPSGCLRSDPGVVAAAGPLRGKKAYAVGSPLVKAAFGQELFQQVAQGSTERVRALLDNGVDVQSLDGSPSRDTALHWAALFGHAGVAALLLDRGADAGAANADGLTPLQEXXXXXXXXXXXXXXXXXXXXXARGXXXXXXXXXXLGAGMSPAEMNAASLLDASARXXXXXXXXXXXXXXXXXXXXXXXXXXPVSEVSEEALVERRXSSSGSAGLQHPLPVPEQAADSDAARAPRQRQPLPHLPAPSTNALALLWPPPERCCLVPGETCLLAASSSGGXXXXXXXXXRGPVLLVLGQGVAASVAELIQATALIAGAERCRAPPPRIMRARTPLLSDGIAVEGADAAGLLYAANTLEQIIRLYGRRRAAAAGSQPAGGALLLPAVTIEDAPALLRRAVTLDLRLPHTPSLARALAFIWRAAAWRYNALVLQVDGRTVAALAQRDARGALPPPGARGSDPQHATAALSWGWSELAEIQACCSANCMDAVVRWHPELQDLENGSRQGSIQALADFVQQLDSAEVLLDLTRLDRRAAAAADSAHXXXXXXXXXXXXXXXLAPGLEDHISDYIRDVRAVLAACGCDSVVLAGLAWDEVDALRAVLSSEDGAVRCSFVAPDKVAVLRAVLSAGXXXXXXXFAPALPPSEAALASMAAHHRSALCAGAPAYFTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRGAPPHLRPELLERAAAFCAAGALWSARGEGARLLQHCLSAAASPDSADSKAVLGSLLSAHVLHAGTVAPVSAADGGITPAAVAGLIGALLPISSXXXXXXXXXXXXXXXXXXXXXXXLSAAWSLLCAPMHAHTDGAYSSDAAAADSGSXXXXXXXXXXXAVGVGSSGLSDVMVYLGMRDMEHLRELRLRLADMSRLLASLKAHPLVRQLDATASLLRLACRTLLMAGHYAAPAAGGREGSDQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAALPMRLGDAVACVPSSVRLDLANRYLREYELVCNAASRSSAIFNGGTGKLKSASATGKRGSAGASVNGDTTGTSNGSSGGSPDTALSPSDLQQCYRALLAVVDLLTGADAPQRSNGDVCAGVVFGGNSAPVIDRLNDQRVGMGVGWHRRHSFSIRGPPPAHPPHSLLDDWWNALKNKAPRVSCLWLVRQSDQLLIHVQNTMQVSKNELRKILTTIAGRPVELHSKTWKDM
Sbjct: 1 MSSVPASTVDDSEEVRVLFAAADAGRTDILKAAIDAIAAKHADNPSGCLRSDPGVVAAAGPLRGKKAYAVGSPLVKAAFGQELFQQVAQGSTERVRALLDNGVDVQSLDGSPSRDTALHWAALFGHAGVAALLLDRGADAGAANADGLTPLQEXXXXXXXXXXXXXXXXXXXXXARGXXXXXXXXXXLGAGMSPAEMNAASLLDASARXXXXXXXXXXXXXXXXXXXXXXXXXXPVSEVSEEALVERRXSSSGSAGLQHPLPVPEQAADSDAARAPRQRQPLPHLPAPSTNALALLWPPPERCCLVPGETCLLAASSSGGXXXXXXXXXRGPVLLVLGQGVAASVAELIQATALIAGAERCRAPPPRIMRARTPLLSDGIAVEGADAAGLLYAANTLEQIIRLYGRRRAAAAGSQPAGGALLLPAVTIEDAPALLRRAVTLDLRLPHTPSLARALAFIWRAAAWRYNALVLQVDGRTVAALAQRDARGALPPPGARGSDPQHATAALSWGWSELAEIQACCSANCMDAVVRWHPELQDLENGSRQGSIQALADFVQQLDSAEVLLDLTRLDRRAAAAADSAHXXXXXXXXXXXXXXXLAPGLEDHISDYIRDVRAVLAACGCDSVVLAGLAWDEVDALRAVLSSEDGAVRCSFVAPDKVAVLRAVLSAGXXXXXXXFAPALPPSEAALASMAAHHRSALCAGAPAYFTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRGAPPHLRPELLERAAAFCAAGALWSARGEGARLLQHCLSAAASPDSADSKAVLGSLLSAHVLHAGTVAPVSAADGGITPAAVAGLIGALLPISSXXXXXXXXXXXXXXXXXXXXXXXLSAAWSLLCAPMHAHTDGAYSSDAAAADSGSXXXXXXXXXXXAVGVGSSGLSDVMVYLGMRDMEHLRELRLRLADMSRLLASLKAHPLVRQLDATASLLRLACRTLLMAGHYAAPAAGGREGSDQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAALPMRLGDAVACVPSSVRLDLANRYLREYELVCNAASRSSAIFNGGTGKLKSASATGKRGSAGASVNGDTTGTSNGSSGGSPDTALSPSDLQQCYRALLAVVDLLTGADAPQRSNGDVCAGVVFGGNSAPVIDRLNDQRVGMGVGWHRRHSFSIRGPPPAHPPHSLLDDWWNALKNKAPRVSCLWLVRQSDQLLIHVQNTMQVSKNELRKILTTIAGRPVELHSKTWKDM 1292
BLAST of jgi.p|Trimin1|348660 vs. uniprot
Match: A0A835ZJK2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJK2_9STRA) HSP 1 Score: 166 bits (420), Expect = 4.680e-39 Identity = 75/91 (82.42%), Postives = 82/91 (90.11%), Query Frame = 1
Query: 3601 RVGMGVGWHRRHSFSIRGPPPAHPPHSLLDDWWNALKNKAPRVSCLWLVRQSDQLLIHVQNTMQVSKNELRKILTTIAGRPVELHSKTWKD 3873
RVGMG W RRHSFSIRGPPP+HPPHS LDDWW AL+ KAPRV+CLWLVRQSDQLLIHVQN QVSKN+LRKIL+TIAGRPVELHS+TW +
Sbjct: 464 RVGMGGDWRRRHSFSIRGPPPSHPPHSALDDWWKALRIKAPRVNCLWLVRQSDQLLIHVQNEPQVSKNKLRKILSTIAGRPVELHSRTWAN 554
BLAST of jgi.p|Trimin1|348660 vs. uniprot
Match: F0YBV5_AURAN (Glyco_hydro_20b domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YBV5_AURAN) HSP 1 Score: 67.4 bits (163), Expect = 2.000e-7 Identity = 142/517 (27.47%), Postives = 182/517 (35.20%), Query Frame = 1
Query: 37 EEVRVLFAAADAGRTDILKAAIDAIAAK---------------HADNPSGC----LRSDPGVVAAAGPLRGKKAYA-VGSPLV--------KAAFGQELFQQVAQGSTERV-RALLDNGVDVQSLDGSP-SRDTALHWAALFGHAGVAALLLDRGADAGAANADGLTPLQEXXXXXXXXXXXXXXXXXXXXXARGXXXXXXXXXXLGAGMSPAEMNAASLLDASARXXXXXXXXXXXXXXXXXXXXXXXXXXPVSEVSEEALVERRXSSSGSAGLQHPLPVPEQAADSDAARAPRQRQPLPHLPAPSTNALALLWPPPERCCLVPGETCLLAASSS---GGXXXXXXXXXRGPVLLVLGQGVAASVAELI------QATALIAGAERCRAPPP-RIMRARTPLLSDGIAVEGADAAGLLYAANTLEQIIRLYGRRRAAAAGSQPAGGALLLPAVTIEDAPALLRRAVTLDLRLPHTPSLARALAFIWRAAAWRYNALVLQVDGRTVAALAQRDARGA 1467
EE+RVLFAAA+ GR DI+ +A ++ K A N +G + D G V A L AY V +P +AA EL QQVA G RV + L G D +P D LHWAA FG LL G A A N DG+TPL E A G AG ++ + A+ A E + +A P P A +D A R R PL +WPPP RC L+ G L S G L L + A A ++ + A P RI+ AR AV GADAAGL + A+TL Q++R + A GS LPA+ I+D P RA +D+R P A+ R A+WR NAL + DG + A AR A
Sbjct: 23 EELRVLFAAAEYGRADIVASAAKSLQEKLEAPGDPVDLGRVLGDATNDAGAHLLQVACDHGKVDAVRALLRVGAYPPVAAPAAWLRDGTPCRAAAHAELMQQVALGDVSRVEKCLALLGPSPLLSDCAPFGGDGPLHWAASFGQVAPLEALLAAGVAADALNDDGVTPLHEAAKANHGECVEKLV-------AAGADVALAVAEGTNAGKRACDLATKPDVQAAC-----------------------------------AAPEPPPKKAAAAPAXXPAXXPRPAEGADGAA--RCRAPL-------------VWPPPRRCRLLRGAPDLRLGGPSIVVGVEDPDTAEAAYASALRTLRVEIGARFAVVVGPLGEPHDVSFRLCARSTGGPESYRILVAR-----GAAAVVGADAAGLKHGASTLAQLLRFHASCATEAGGSSTV---FKLPALAIDDGPDASVRAGLVDVRGAAAPRAAQVDDDARRLASWRLNALFVLCDGAGMDAFDGDAARAA 474
BLAST of jgi.p|Trimin1|348660 vs. uniprot
Match: A0A7S4E820_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E820_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 2.590e-7 Identity = 153/493 (31.03%), Postives = 194/493 (39.35%), Query Frame = 1
Query: 37 EEVRVLFAAADAGRTDILKAAIDAIAAKHADNPS-----GCLRSDPG------------VVAAAGPLRGKKAYAVGSPL--------VKAAFGQELFQQVAQGSTERVRALLDNGVDVQSLDGSPS--RDTALHWAALFGHAGVAALLLDRGADAGAANADGLTPLQEXXXXXXXXXXXXXXXXXXXXXARGXXXXXXXXXXLGAGMSPAEMNAASLLDASARXXXXXXXXXXXXXXXXXXXXXXXXXXPVSEVSEEALVERRXSSSGSAGLQHPLPVPEQAADSDAARAPRQRQPLPHLPAPSTNALALLWPPPERCCLVPG--ETCLLAASSSGGXXXXXXXXXRGPVLLVLGQGVAASVA-ELIQATALIAGAERCRAPPPRIMRARTPLLSDGIA-VEGADAAGLLYAANTLEQIIRLYGRRRAAAAGSQPAGGALLLPAVTIEDAPALLRRAVTLDLRLPHTPSLARALAFIWRAAAWRYNALVLQVD 1422
EE RVLFAAA+ GR DI+ +A A+ K A G R+D V A LR A SP+ +AA EL QQVA G RV LL + L + + D+ LHWAA FG LL GA+ A N DG+T XXXXXXXXXXXXXXXXXXX R AG PA++ L + P EV P P P+++ D + A R R PL +WPPP RC L+ G E A S G L L V A +++ A + + R A L+ DG+A V G DAAGL + A+TL Q++R + + A A LPA+ ++D P L RA LD R P A+ R A+WR NAL + D
Sbjct: 26 EEYRVLFAAAEYGRADIVASAAAALKEKLAPGEDLAEALGAARNDDDASLLEKACSSNKVDAVRALLRVGAIPAAASPVSWLEEGSACRAAAHAELMQQVALGDAGRVTKLLALLGSIPRLSDAATFGGDSPLHWAASFGQEAALEALLAAGAEPCATNDDGVTXXXXXXXXXXXXXXXXXXXXXXXASLR-------ISDGPDAGKLPADLAKNDALQKTLAVST-----------------------PAKEVKTIT----------------PPPSPKRSVDVEDQGAARCRAPL-------------VWPPPRRCRLLRGAPELEFRGAEISVGVHSSIDDARFDAALRTLRVEVGARFGVKVVTANEEHSVSLRVCAKTTGGPEGYRVLVRDGVAAVVGHDAAGLKHGASTLAQLLRFHA---SCGKDEDDALPAFRLPALAVDDGPDALVRAACLDCRGAAAPRNAQIDDDARRLASWRCNALFILAD 456
BLAST of jgi.p|Trimin1|348660 vs. uniprot
Match: A9V9R8_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V9R8_MONBE) HSP 1 Score: 59.3 bits (142), Expect = 5.700e-5 Identity = 31/67 (46.27%), Postives = 41/67 (61.19%), Query Frame = 1
Query: 247 LFQQVAQGSTERVRALLDNGVDVQSLDGSPSRDTALHWAALFGHAGVAALLLDRGADAGAANADGLT 447
L Q +A + LL+ G+ V + DG+ S++T LHWAA F +A LLLDRGAD A NA+G T
Sbjct: 104 LLQSIATNDKATITDLLEAGIHVNATDGAASQNTPLHWAAHFANAETLQLLLDRGADPNATNAEGAT 170
BLAST of jgi.p|Trimin1|348660 vs. uniprot
Match: A0A1S4N319_PEDHC (Glyco_hydro_20b domain-containing protein n=2 Tax=Pediculus humanus subsp. corporis TaxID=121224 RepID=A0A1S4N319_PEDHC) HSP 1 Score: 59.3 bits (142), Expect = 5.790e-5 Identity = 30/76 (39.47%), Postives = 43/76 (56.58%), Query Frame = 1
Query: 223 VKAAFGQELFQQVAQGSTERVRALLDNGVDVQSLDGSPSRDTALHWAALFGHAGVAALLLDRGADAGAANADGLTP 450
+K + EL + A RV+ +LD GVDV +D ++++ LHWAA +G V L+DRGA A N+ G TP
Sbjct: 112 IKQIYVDELLRATASSDVNRVKQILDAGVDVNCVDTKETKNSPLHWAACYGTGNVIKFLIDRGARVNAVNSCGATP 187 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348660 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
BLAST of jgi.p|Trimin1|348660 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_9613 ID=mRNA_9613|Name=jgi.p|Trimin1|348660|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=726bp|location=Sequence derived from alignment at Contig_29:962742..965596- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGTCCTCGCCCAGCCAGTCTGATGAGGAACTGCTGCAGCCCACTGCAGCback to top protein sequence of jgi.p|Trimin1|348660 >Trimin1|348660|estExt_Genemark1.C_Ctg_290114 ID=Trimin1|348660|estExt_Genemark1.C_Ctg_290114|Name=jgi.p|Trimin1|348660|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=242bp MSSPSQSDEELLQPTAAELVSKKGHRRKLLAAAAGLAVCLTLGAYQFLFEback to top mRNA from alignment at Contig_29:962742..965596- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_9613 ID=mRNA_9613|Name=jgi.p|Trimin1|348660|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2855bp|location=Sequence derived from alignment at Contig_29:962742..965596- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_29:962742..965596- >mRNA_9613 ID=mRNA_9613|Name=jgi.p|Trimin1|348660|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=726bp|location=Sequence derived from alignment at Contig_29:962742..965596- (Tribonema minus UTEX_B_3156 )back to top |