mRNA_18715 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|354591
Unique NamemRNA_18715
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|354591 vs. uniprot
Match: A0A836CH18_9STRA (HMA domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH18_9STRA)

HSP 1 Score: 469 bits (1208), Expect = 7.140e-167
Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 1 
Query:    1 MASLTDIDAAASAASTAAVTCHSWAKSPTTLGLLTGLLASNCCVIQLVLNLLGTGCAGFRKLEAYKPVWLALNAVALARCCSAAAISSGPLGALRSRAMALTHGRWRKLAITLFCLSLTFSEDALRAWNNRGVRRGGKPPRLPSESSPAAPTLDAAVCAAEARHGVTLQVGEGEPVHERVDAVHLTIGGMRCEGCRRGVISALAAVPGVVTVTVSMAGTAAIVLHAHANREDTIRQAVDAVAMAGFSATP 750
            MASLTDIDAAASAASTAAVTCHSWAKSPTTLGLLTGLLASNCCVIQLVLNLLGTGCAGFRKLEAYKPVWLALNAVALARCCSAAAISSGPLGALRSRAMALTHGRWRKLAITLFCLSLTFSEDALRAWNNRGVRRGGKPPRLPSESSPAAPTLDAAVCAAEARHGVTLQVGEGEPVHERVDAVHLTIGGMRCEGCRRGVISALAAVPGVVTVTVSMAGTAAIVLHAHANREDTIRQAVDAVAMAGFSATP
Sbjct:    1 MASLTDIDAAASAASTAAVTCHSWAKSPTTLGLLTGLLASNCCVIQLVLNLLGTGCAGFRKLEAYKPVWLALNAVALARCCSAAAISSGPLGALRSRAMALTHGRWRKLAITLFCLSLTFSEDALRAWNNRGVRRGGKPPRLPSESSPAAPTLDAAVCAAEARHGVTLQVGEGEPVHERVDAVHLTIGGMRCEGCRRGVISALAAVPGVVTVTVSMAGTAAIVLHAHANREDTIRQAVDAVAMAGFSATP 250
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BLAST of jgi.p|Trimin1|354591 vs. uniprot
Match: A0A0D2N0M1_9CHLO (HMA domain-containing protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2N0M1_9CHLO)

HSP 1 Score: 65.5 bits (158), Expect = 5.170e-9
Identity = 67/191 (35.08%), Postives = 88/191 (46.07%), Query Frame = 1 
Query:   91 LGLLTG-LLASNCCVIQLVLNLLGTGCAGFRKLEAYKPVWLALNAVALARCCSAAAISSGPLGALRSRAMALTHGRWRKLAITLFC-LSLTFSEDALRAWNNRGVRRGGKPPRLPSESSPAAPTLDAAVCAAEARHGVTLQVGEGEP--VHERVDAVHLTIGGMRCEGCRRGVISALAAVPGVVTVTVSMA 651
            LG LTG LL+S+CC++QLVLN L  GCAGF   + Y+ +   L A              G L  L +R     HG  R+   T+ C + LTFSEDAL   N    R+G     L   S P               HG      + +P  V  RVD     + GMRC+ C   +  ++AA+PGV   TV +A
Sbjct:   18 LGALTGGLLSSSCCIVQLVLNSLSVGCAGFSVFKPYRNLLRVLTA--------------GMLALLLAR-----HGVNRRTIGTVVCSVLLTFSEDALSVIN----RQGSLQDLLRHMSLP---------------HGGGHPAVQRDPAIVRWRVD-----VDGMRCQACAARIRGSVAALPGVRNATVELA 165
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BLAST of jgi.p|Trimin1|354591 vs. uniprot
Match: A0A818CQU7_9BILA (Hypothetical protein n=4 Tax=unclassified Rotaria TaxID=2631648 RepID=A0A818CQU7_9BILA)

HSP 1 Score: 59.7 bits (143), Expect = 1.980e-7
Identity = 38/104 (36.54%), Postives = 56/104 (53.85%), Query Frame = 1 
Query:   94 GLLTGLLASNCCVIQLVLNLLGTGCAGFRKLEA-YKPVWLALNAVALARCCSAAAISSGPLGALRSRAMALTHGRWRKLAITLFCLSLTFSEDALRAWNNRGVR 402
            GL+ GLL S+CC+IQLVLNL G GCAG   L   Y+P++++L  ++L                 R R       +W   ++ +F L L+FS + LR +NN+  R
Sbjct:    9 GLIGGLLISSCCLIQLVLNLFGIGCAGLNTLLLPYRPLFISLTIISLT------------YSFFRYR-----PSKWHFTSVVIFTLILSFSPELLRIYNNQFTR 95
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BLAST of jgi.p|Trimin1|354591 vs. uniprot
Match: A0A8H7ULF6_9FUNG (HMA domain-containing protein n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7ULF6_9FUNG)

HSP 1 Score: 58.2 bits (139), Expect = 8.680e-7
Identity = 40/100 (40.00%), Postives = 51/100 (51.00%), Query Frame = 1 
Query:   97 LLTGLLASNCCVIQLVLNLLGTGCAGFRKLEAYKPVWLALNAVALARCCSAAAISSGPLGALRSRAMALTHGRWRKLAITLFCLSLTFSEDALRAWNNRG 396
            LL+ LL+S+CCVIQLVLNL    CAGF  L  Y+P  +AL AV+L+    +  + S  LG                  I L CL L  S DA+  +N  G
Sbjct:   18 LLSALLSSSCCVIQLVLNLFSFSCAGFSILTPYRPYLVALTAVSLSYTLFSRGLDSETLG------------------IVLLCLLLMVSPDAVDYYNRTG 99
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BLAST of jgi.p|Trimin1|354591 vs. uniprot
Match: A8IX44_CHLRE (Predicted protein n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8IX44_CHLRE)

HSP 1 Score: 57.4 bits (137), Expect = 5.240e-6
Identity = 38/101 (37.62%), Postives = 50/101 (49.50%), Query Frame = 1 
Query:   97 LLTGLLASNCCVIQLVLNLLGTGCAGFRKLEAYKPVWLALNAVALARCCSAAAISSGPLGALRSRAMALTHGRWRKLAITLFCLSLTFSEDALRAWNNRGV 399
            LL GL AS+CCV+QL LN +G GCAGF  L  Y+P++  +   ALA        S+                  R L  T   L L FS+DA+R +N  G+
Sbjct:   27 LLGGLGASSCCVLQLALNAVGLGCAGFAVLTPYEPIFKGITLAALAHLLLRDGFSNR-----------------RALLTTALSLGLLFSQDAVRFYNRGGL 110
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BLAST of jgi.p|Trimin1|354591 vs. uniprot
Match: A0A433QKS1_9FUNG (HMA domain-containing protein n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433QKS1_9FUNG)

HSP 1 Score: 55.1 bits (131), Expect = 1.140e-5
Identity = 29/47 (61.70%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:   91 LGLLTGLLASNCCVIQLVLNLLGTGCAGFRKLEAYKPVWLALNAVAL 231
            L LLT LLAS+CCVIQL+LNL    CAGF  L  Y+PV+ AL A++L
Sbjct:    7 LPLLTSLLASSCCVIQLLLNLFSVSCAGFAILTPYRPVFTALTALSL 53
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BLAST of jgi.p|Trimin1|354591 vs. uniprot
Match: A0A7R9YST7_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9YST7_9CHLO)

HSP 1 Score: 55.1 bits (131), Expect = 1.750e-5
Identity = 60/178 (33.71%), Postives = 78/178 (43.82%), Query Frame = 1 
Query:  109 LLASNCCVIQLVLNLLGTGCAGFRKLEAYKPVWLALNAVALARCCSAAAISSGPLGALRSRAMALTHGRWRKLAITLFCLSLTFSEDALRAWNNRGVRRGGKPPRLPSESSPAAPTLDAAVCAAEARHGVTLQVGEGEPVHERVDAVHLTIGGMRCEGCRRGVISALAAVPGVVTVTV 642
            L+ASNCCV+QLVLN L  GCAGF  L+ YK V  AL  + + R           L A+R R         R  A     L L  S+D L AW NR           P+ SS    ++     +  A      Q G+    H  V    +   GM+CEGC   V +AL  V G+  V++
Sbjct:   37 LVASNCCVLQLVLNSLSLGCAGFAALDPYKGVGRALAVMCVGRLL---------LKAVRQRER-------RAGAFAAISLLLLASQDVL-AWTNRNP--------TPASSS----SVSWWWRSWHATASPMSQHGQNAGAHFVVYCFEVQ--GMKCEGCAARVKAALLEVEGIEEVSI 183
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BLAST of jgi.p|Trimin1|354591 vs. uniprot
Match: A0A397S9E4_9GLOM (HMA domain-containing protein n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397S9E4_9GLOM)

HSP 1 Score: 52.8 bits (125), Expect = 7.670e-5
Identity = 22/43 (51.16%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:   97 LLTGLLASNCCVIQLVLNLLGTGCAGFRKLEAYKPVWLALNAV 225
            ++TGLL+S+CC+IQLVLN+   GCAGF  L  Y+P++L+   +
Sbjct:   18 IITGLLSSSCCIIQLVLNIFSIGCAGFSILTPYRPIFLSFTTI 60
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354591 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A836CH18_9STRA7.140e-167100.00HMA domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A0D2N0M1_9CHLO5.170e-935.08HMA domain-containing protein n=1 Tax=Monoraphidiu... [more]
A0A818CQU7_9BILA1.980e-736.54Hypothetical protein n=4 Tax=unclassified Rotaria ... [more]
A0A8H7ULF6_9FUNG8.680e-740.00HMA domain-containing protein n=1 Tax=Umbelopsis v... [more]
A8IX44_CHLRE5.240e-637.62Predicted protein n=2 Tax=Chlamydomonas reinhardti... [more]
A0A433QKS1_9FUNG1.140e-561.70HMA domain-containing protein n=1 Tax=Jimgerdemann... [more]
A0A7R9YST7_9CHLO1.750e-533.71Hypothetical protein n=1 Tax=Chlamydomonas euryale... [more]
A0A397S9E4_9GLOM7.670e-551.16HMA domain-containing protein n=1 Tax=Glomus cereb... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_281contigContig_281:21550..23463 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|354591|estExt_Genemark1.C_Ctg_2810003
DescriptionHeavy-metal-associated domain
COG categoryS
Max annot lvl3041|Chlorophyta
EggNOG OGs2C2PG@1|root,2SBPY@2759|Eukaryota,3820D@33090|Viridiplantae,34NAH@3041|Chlorophyta
Evalue8.6e-07
Seed ortholog3055.EDP03338
Hectar predicted targeting categoryother localisation
TranscriptId354913
TrackFilteredModels1
ProteinId354591
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354591gene_18715Tribonema minus UTEX_B_3156 geneContig_281 21550..23463 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354591Trimin1|354591|estExt_Genemark1.C_Ctg_2810003Tribonema minus UTEX_B_3156 polypeptideContig_281 21550..23462 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_18715_1exon_18715_1Tribonema minus UTEX_B_3156 exonContig_281 21550..21687 +
exon_18715_2exon_18715_2Tribonema minus UTEX_B_3156 exonContig_281 21906..22009 +
exon_18715_3exon_18715_3Tribonema minus UTEX_B_3156 exonContig_281 22091..22410 +
exon_18715_4exon_18715_4Tribonema minus UTEX_B_3156 exonContig_281 23275..23463 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_18715CDS_18715Tribonema minus UTEX_B_3156 CDSContig_281 21550..21687 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_18715UTR3_18715Tribonema minus UTEX_B_3156 three_prime_UTRContig_281 23463..23463 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_18715 ID=mRNA_18715|Name=jgi.p|Trimin1|354591|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=751bp|location=Sequence derived from alignment at Contig_281:21550..23463+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCATCGCTGACAGACATCGATGCCGCTGCTTCTGCGGCAAGCACAGC
TGCTGTCACGTGCCACTCATGGGCCAAGTCTCCAACCACGCTCGGCCTGC
TCACGGGCCTGCTGGCATCAAATTGCTGTGTGATACAGCTGGTGCTGAAC
CTATTAGGGACGGGCTGCGCAGGATTCCGCAAGCTCGAAGCCTACAAACC
CGTGTGGCTGGCGCTCAATGCAGTTGCACTGGCCCGATGCTGCAGCGCAG
CAGCGATCAGCAGCGGCCCTCTCGGAGCGCTGCGGTCGCGTGCAATGGCG
CTCACACACGGGCGCTGGCGCAAGCTGGCCATCACGCTGTTCTGCCTCTC
TCTGACCTTCAGCGAGGACGCACTGCGCGCGTGGAACAACAGGGGCGTGC
GCAGAGGGGGAAAACCCCCCAGGCTCCCCAGTGAGAGTTCGCCTGCCGCG
CCCACTCTGGATGCGGCGGTGTGTGCTGCTGAAGCCCGGCACGGTGTGAC
GCTGCAAGTTGGCGAGGGCGAGCCAGTGCATGAGCGGGTGGATGCCGTTC
ACCTGACCATCGGTGGTATGCGCTGCGAGGGTTGTCGCAGGGGCGTCATT
TCGGCGCTCGCTGCAGTACCCGGCGTCGTCACCGTCACAGTCTCCATGGC
TGGCACTGCGGCCATAGTGCTGCACGCGCACGCCAACAGAGAGGACACCA
TTCGGCAAGCCGTGGATGCCGTTGCCATGGCTGGCTTCTCCGCTACGCCT
A
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protein sequence of jgi.p|Trimin1|354591

>Trimin1|354591|estExt_Genemark1.C_Ctg_2810003 ID=Trimin1|354591|estExt_Genemark1.C_Ctg_2810003|Name=jgi.p|Trimin1|354591|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=250bp
MASLTDIDAAASAASTAAVTCHSWAKSPTTLGLLTGLLASNCCVIQLVLN
LLGTGCAGFRKLEAYKPVWLALNAVALARCCSAAAISSGPLGALRSRAMA
LTHGRWRKLAITLFCLSLTFSEDALRAWNNRGVRRGGKPPRLPSESSPAA
PTLDAAVCAAEARHGVTLQVGEGEPVHERVDAVHLTIGGMRCEGCRRGVI
SALAAVPGVVTVTVSMAGTAAIVLHAHANREDTIRQAVDAVAMAGFSATP
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mRNA from alignment at Contig_281:21550..23463+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_18715 ID=mRNA_18715|Name=jgi.p|Trimin1|354591|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1914bp|location=Sequence derived from alignment at Contig_281:21550..23463+ (Tribonema minus UTEX_B_3156 )
ATGGCATCGCTGACAGACATCGATGCCGCTGCTTCTGCGGCAAGCACAGC
TGCTGTCACGTGCCACTCATGGGCCAAGTCTCCAACCACGCTCGGCCTGC
TCACGGGCCTGCTGGCATCAAATTGCTGTGTGATACAGGTGAGCCTGGGG
CTTGAGCCGTAGCATACACTGAAAGCATGCGCTGCTACCGAGGTGTGTCG
CTGTGCGTGTGCATCGATGCACGGACGGAGTTGAAGTTGGGTCGGTTTTT
GGTGCTTTTCTTGCGCAGACGTACTTGCCGTGCGACAATGCAGCATGCAA
GTACTTACTTGCCACAAACTCGCTGGCTTGCGGGTTCCCCCCTGTCTCGT
GCACAGCTGGTGCTGAACCTATTAGGGACGGGCTGCGCAGGATTCCGCAA
GCTCGAAGCCTACAAACCCGTGTGGCTGGCGCTCAATGCAGTTGCACTGG
CCCGATGCTGGTGCGCAGAAGGCAGCGGCAGCTGCGGACACATGTCCTGC
GGCTCATCAGCAGCTGCAGCCTCCTCTGCGTGCTGCCACAGCAGCGCAGC
AGCGATCAGCAGCGGCCCTCTCGGAGCGCTGCGGTCGCGTGCAATGGCGC
TCACACACGGGCGCTGGCGCAAGCTGGCCATCACGCTGTTCTGCCTCTCT
CTGACCTTCAGCGAGGACGCACTGCGCGCGTGGAACAACAGGGGCGTGCG
CAGAGGGGGAAAACCCCCCAGGCTCCCCAGTGAGAGTTCGCCTGCCGCGC
CCACTCTGGATGCGGCGGTGTGTGCTGCTGAAGCCCGGCACGGTGTGACG
CTGCAAGTTGGCGAGGGCGAGCCAGTGCATGAGCGGGTGGATGCCGTTCA
CCTGACCATCGGTGCGTTGACCGCCACATTCGTCATGATCTGTAAAAATG
GCATGCGCGCATGCAAACCTGCGTGAATGCCGGTCAGCTCGACAGCCAAA
TATGCCTATAAAGCTGCCGGTACAAGGGGCGGATCATGTGGTAAGAAGTG
ACCAGCACACGCCAAAGCTCAAGTGCTAGTTATTTGCAGCACCACTATTG
TCTGCTGCTTTGAGACACTACTTCCATTTTTCACGAGTCTACATCCGAAC
CGTCCAGCTTGAATTTTCACATCTCATGGTGGGCGACAAGGCCTTGGTGG
TGGCAGTTGAGATTGAATGATTGTTTCATGAGGGTAAGATGATTACCTGA
CACTCAACTTAATCCTGCCAAGGTTGTTGCGCTGTGCATGACAACAACGC
AGGAATGCATACTGTGCGTGGGGCATGACAACGGCAACAGCCCACTCGTG
CTACTGTTTGCATGCATACCTCCAAGTATATGTTCATATGCATTCTTATA
GCTTAGCGCTGCTACTGTAGCTACATGAACACTGCTACGCAAATACACCA
TGTGCAGGCATCGAGCAGTAGACTAAGTCAGTGCGCCGCATATGGTAACT
GTGCGGATTGACACCGCACCTTGGTTGTCGGAGCACTTGGCTATGGCTTT
TGTGAGTGACATAAAAGCAGGCACTGCATAATGTGTGTGTGGCATGACAC
CGGCAGCAGCCCACTCGCGCTATGCACTCTTACTTGCTACACATGCCACT
GCACATGTGCGATCGTGCCACATGCATCAGACTGCAGCCCAATATCACCA
TCATTGTGACCATCTTCTTTCCCTTTAAAGTGATGGCGCGTGACGCGGTA
TGTGTTGTGTGTATCGCCTGGGCAGGTGGTATGCGCTGCGAGGGTTGTCG
CAGGGGCGTCATTTCGGCGCTCGCTGCAGTACCCGGCGTCGTCACCGTCA
CAGTCTCCATGGCTGGCACTGCGGCCATAGTGCTGCACGCGCACGCCAAC
AGAGAGGACACCATTCGGCAAGCCGTGGATGCCGTTGCCATGGCTGGCTT
CTCCGCTACGCCTA
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Coding sequence (CDS) from alignment at Contig_281:21550..23463+

>mRNA_18715 ID=mRNA_18715|Name=jgi.p|Trimin1|354591|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=750bp|location=Sequence derived from alignment at Contig_281:21550..23463+ (Tribonema minus UTEX_B_3156 )
ATGGCATCGCTGACAGACATCGATGCCGCTGCTTCTGCGGCAAGCACAGC
TGCTGTCACGTGCCACTCATGGGCCAAGTCTCCAACCACGCTCGGCCTGC
TCACGGGCCTGCTGGCATCAAATTGCTGTGTGATACAGCTGGTGCTGAAC
CTATTAGGGACGGGCTGCGCAGGATTCCGCAAGCTCGAAGCCTACAAACC
CGTGTGGCTGGCGCTCAATGCAGTTGCACTGGCCCGATGCTGCAGCGCAG
CAGCGATCAGCAGCGGCCCTCTCGGAGCGCTGCGGTCGCGTGCAATGGCG
CTCACACACGGGCGCTGGCGCAAGCTGGCCATCACGCTGTTCTGCCTCTC
TCTGACCTTCAGCGAGGACGCACTGCGCGCGTGGAACAACAGGGGCGTGC
GCAGAGGGGGAAAACCCCCCAGGCTCCCCAGTGAGAGTTCGCCTGCCGCG
CCCACTCTGGATGCGGCGGTGTGTGCTGCTGAAGCCCGGCACGGTGTGAC
GCTGCAAGTTGGCGAGGGCGAGCCAGTGCATGAGCGGGTGGATGCCGTTC
ACCTGACCATCGGTGGTATGCGCTGCGAGGGTTGTCGCAGGGGCGTCATT
TCGGCGCTCGCTGCAGTACCCGGCGTCGTCACCGTCACAGTCTCCATGGC
TGGCACTGCGGCCATAGTGCTGCACGCGCACGCCAACAGAGAGGACACCA
TTCGGCAAGCCGTGGATGCCGTTGCCATGGCTGGCTTCTCCGCTACGCCT
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