mRNA_18640 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|137159
Unique NamemRNA_18640
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|137159 vs. uniprot
Match: A0A835Z231_9STRA (C2 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z231_9STRA)

HSP 1 Score: 150 bits (379), Expect = 3.540e-46
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1 
Query:    1 DRMIEVGMLTARVIAARNVKAAVEGSFYGLLSPRSSNCYCRLQVGDSMQTSSTARQTLNPQWNREQFFFPVMVS 222
            DRMIEVGMLTARVIAARNVKAAVEGSFYGLLSPRSSNCYCRLQVGDSMQTSSTARQTLNPQWNREQFFFPVMVS
Sbjct:    1 DRMIEVGMLTARVIAARNVKAAVEGSFYGLLSPRSSNCYCRLQVGDSMQTSSTARQTLNPQWNREQFFFPVMVS 74
[Close]
BLAST of jgi.p|Trimin1|137159 vs. uniprot
Match: W7TL29_9STRA (C2 domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TL29_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 3.010e-7
Identity = 31/69 (44.93%), Postives = 41/69 (59.42%), Query Frame = 1 
Query:    7 MIEVGMLTARVIAARNVKAAVEGSFYGLLSPRSSNCYCRLQVGDSMQTSSTARQTLNPQWNREQFFFPV 213
            +  VG L  R++AARN+ AAV G F+   S   SN Y  L+   S+Q +S    TL+P W REQ+FF V
Sbjct:   87 LTSVGTLIVRIVAARNLPAAVGGGFF---SNGHSNPYAILEFEGSVQGTSVVPHTLDPVWPREQYFFQV 152
[Close]
BLAST of jgi.p|Trimin1|137159 vs. uniprot
Match: A0A4D9CUC5_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUC5_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 3.520e-7
Identity = 31/69 (44.93%), Postives = 41/69 (59.42%), Query Frame = 1 
Query:    7 MIEVGMLTARVIAARNVKAAVEGSFYGLLSPRSSNCYCRLQVGDSMQTSSTARQTLNPQWNREQFFFPV 213
            +  VG L  R++AARN+ AAV G F+   S   SN Y  L+   S+Q +S    TL+P W REQ+FF V
Sbjct:   59 LTSVGTLIVRIVAARNLPAAVGGGFF---SNGHSNPYAILEFEGSVQGTSVVPHTLDPVWPREQYFFQV 124
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|137159 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835Z231_9STRA3.540e-46100.00C2 domain-containing protein (Fragment) n=1 Tax=Tr... [more]
W7TL29_9STRA3.010e-744.93C2 domain-containing protein n=1 Tax=Nannochlorops... [more]
A0A4D9CUC5_9STRA3.520e-744.93Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_276contigContig_276:29749..30096 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|137159|gw1.276.3.1
Hectar predicted targeting categoryother localisation
TranscriptId137481
TrackFilteredModels1
ProteinId137159
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|137159gene_18640Tribonema minus UTEX_B_3156 geneContig_276 29749..30096 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|137159Trimin1|137159|gw1.276.3.1Tribonema minus UTEX_B_3156 polypeptideContig_276 29749..30096 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_18640_2exon_18640_2Tribonema minus UTEX_B_3156 exonContig_276 29749..29835 -
exon_18640_1exon_18640_1Tribonema minus UTEX_B_3156 exonContig_276 29962..30096 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_18640CDS_18640Tribonema minus UTEX_B_3156 CDSContig_276 29962..30096 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_18640 ID=mRNA_18640|Name=jgi.p|Trimin1|137159|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=222bp|location=Sequence derived from alignment at Contig_276:29749..30096- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GACAGAATGATCGAAGTGGGGATGCTTACGGCAAGGGTGATAGCTGCAAG
GAACGTCAAGGCAGCAGTCGAGGGCAGCTTCTACGGGTTGTTGTCTCCGC
GCTCTTCCAACTGCTACTGCAGGTTGCAGGTTGGGGATTCCATGCAGACA
AGCTCTACAGCACGGCAAACGCTGAACCCGCAGTGGAACAGGGAGCAGTT
CTTCTTTCCTGTCATGGTAAGC
back to top

protein sequence of jgi.p|Trimin1|137159

>Trimin1|137159|gw1.276.3.1 ID=Trimin1|137159|gw1.276.3.1|Name=jgi.p|Trimin1|137159|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=74bp
DRMIEVGMLTARVIAARNVKAAVEGSFYGLLSPRSSNCYCRLQVGDSMQT
SSTARQTLNPQWNREQFFFPVMVS
back to top

mRNA from alignment at Contig_276:29749..30096-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_18640 ID=mRNA_18640|Name=jgi.p|Trimin1|137159|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=348bp|location=Sequence derived from alignment at Contig_276:29749..30096- (Tribonema minus UTEX_B_3156 )
GACAGAATGATCGAAGTGGGGATGCTTACGGCAAGGGTGATAGCTGCAAG
GAACGTCAAGGCAGCAGTCGAGGGCAGCTTCTACGGGTTGTTGTCTCCGC
GCTCTTCCAACTGCTACTGCAGGTTGCAGGTTGGGGTAAGTTGCGTCCTC
GCTTGGTGACAGAAGCGGTCGTTGAACAGAACCTGTGTTGAGGTCAAATG
CAGGGACCAGCAAGGCATTTTGTTCTCGTTGCTGATTGTTCTGCCGGATT
ACGCTCCACAGGATTCCATGCAGACAAGCTCTACAGCACGGCAAACGCTG
AACCCGCAGTGGAACAGGGAGCAGTTCTTCTTTCCTGTCATGGTAAGC
back to top

Coding sequence (CDS) from alignment at Contig_276:29749..30096-

>mRNA_18640 ID=mRNA_18640|Name=jgi.p|Trimin1|137159|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=222bp|location=Sequence derived from alignment at Contig_276:29749..30096- (Tribonema minus UTEX_B_3156 )
GACAGAATGATCGAAGTGGGGATGCTTACGGCAAGGGTGATAGCTGCAAG
GAACGTCAAGGCAGCAGTCGAGGGCAGCTTCTACGGGTTGTTGTCTCCGC
GCTCTTCCAACTGCTACTGCAGGTTGCAGGTTGGGGATTCCATGCAGACA
AGCTCTACAGCACGGCAAACGCTGAACCCGCAGTGGAACAGGGAGCAGTT
CTTCTTTCCTGTCATGGTAAGC
back to top