mRNA_6923 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|348571 vs. uniprot
Match: A0A835YZP9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZP9_9STRA) HSP 1 Score: 717 bits (1852), Expect = 6.200e-260 Identity = 401/401 (100.00%), Postives = 401/401 (100.00%), Query Frame = 1 Query: 1 MTLRMLWYRAACLLVLATLGNAVTCTNSSAVAVPGYKLALTSTSVYELGAIGDYAPPSTTFTEVVTDYAAVSLPWAFNFLGVEYSTVYISRDGFVSFDALSVGAATSGPTSVVPSVVAPSNAIFAFWSNLVYPASSSTYRPRTQYEMADSDTFIVSWFSTETLLEPAGTFELVLHKNGNFDINLSSMAYHFDVEGTNNSLVGWQSQVSSKCICGPSCTASSAESTKGTCDNLFSGTYNWAFSLSATLQYTYGPDCMSGGDLAGKSSSTVMIAAGGACGAGLVLSLLLMFXXXXXXXXXXXAREDAEAEVRRLARLAALDKKSDWDEVGDFRTLGDLTPLETPVSSGETPTGNEGKGRXXXXXXXXXXXXXXXXXDAEEGAAGERTSLTDVPLHMRSDSGGV 1203 MTLRMLWYRAACLLVLATLGNAVTCTNSSAVAVPGYKLALTSTSVYELGAIGDYAPPSTTFTEVVTDYAAVSLPWAFNFLGVEYSTVYISRDGFVSFDALSVGAATSGPTSVVPSVVAPSNAIFAFWSNLVYPASSSTYRPRTQYEMADSDTFIVSWFSTETLLEPAGTFELVLHKNGNFDINLSSMAYHFDVEGTNNSLVGWQSQVSSKCICGPSCTASSAESTKGTCDNLFSGTYNWAFSLSATLQYTYGPDCMSGGDLAGKSSSTVMIAAGGACGAGLVLSLLLMFXXXXXXXXXXXAREDAEAEVRRLARLAALDKKSDWDEVGDFRTLGDLTPLETPVSSGETPTGNEGKGRXXXXXXXXXXXXXXXXXDAEEGAAGERTSLTDVPLHMRSDSGGV Sbjct: 1 MTLRMLWYRAACLLVLATLGNAVTCTNSSAVAVPGYKLALTSTSVYELGAIGDYAPPSTTFTEVVTDYAAVSLPWAFNFLGVEYSTVYISRDGFVSFDALSVGAATSGPTSVVPSVVAPSNAIFAFWSNLVYPASSSTYRPRTQYEMADSDTFIVSWFSTETLLEPAGTFELVLHKNGNFDINLSSMAYHFDVEGTNNSLVGWQSQVSSKCICGPSCTASSAESTKGTCDNLFSGTYNWAFSLSATLQYTYGPDCMSGGDLAGKSSSTVMIAAGGACGAGLVLSLLLMFXXXXXXXXXXXAREDAEAEVRRLARLAALDKKSDWDEVGDFRTLGDLTPLETPVSSGETPTGNEGKGRXXXXXXXXXXXXXXXXXDAEEGAAGERTSLTDVPLHMRSDSGGV 401
BLAST of jgi.p|Trimin1|348571 vs. uniprot
Match: A0A382X0W6_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382X0W6_9ZZZZ) HSP 1 Score: 60.1 bits (144), Expect = 1.570e-6 Identity = 39/123 (31.71%), Postives = 63/123 (51.22%), Query Frame = 1 Query: 211 VSLPWAFNFLGVEYSTVYISRDGFVSFDALSVGAATSGPTSVVPSVVAPSNAIFAFWSNLVYPASSSTYRPRTQYEMADSDTFIVSWFSTET-LLEPAGTFELVLHKNGN--FDINLSSMAYH 570 V LP+ F+F GV+Y+T+ + +GF+SF A + + + P VP PS + FW +L ++ + Y Y D++ FIV W + T TFEL+L+ + FD + M Y+ Sbjct: 117 VDLPFPFSFYGVDYTTITVCSNGFISFGASELESFRNYP---VPGAGGPSPMVAVFWDDLTTSSNGNVYT----YADPDNEYFIVEWSNMRTDNYNSVNTFELILYNDTAPPFDDGIMKMQYN 232
BLAST of jgi.p|Trimin1|348571 vs. uniprot
Match: A0A7V2JHG3_9BACT (T9SS type A sorting domain-containing protein n=2 Tax=Bacteria TaxID=2 RepID=A0A7V2JHG3_9BACT) HSP 1 Score: 60.5 bits (145), Expect = 4.000e-6 Identity = 45/152 (29.61%), Postives = 74/152 (48.68%), Query Frame = 1 Query: 211 VSLPWAFNFLGVEYSTVYISRDGFVSFDALSVGAATSGPTSVVPSVVAPSNAIFAFWSNLVYPASSSTYRPRTQYEMADSDTFIVSWFSTETLL----EPAGTFELVLHKNG---------NFDINLSSMAYHFDVEGTNNSLVGWQSQVSS 627 + LPWAF+F G EY++++I G+V FD V +S TS+ P AP AIF +W N+ + Y +T + FI++W L + F+LVL ++G N D+N +++ + D G++ L + + V S Sbjct: 601 IQLPWAFDFYGTEYNSLWICESGYVMFDEPGVAYGSSSNTSL-PRPYAPKPAIFPYWDNIGTDEGGNIYASQT------GNAFIITWNDLHHLEWETDDGPYRFQLVLTRDGAIHTQYADMNGDVNSATIGIN-DENGSSGLLTAFNTGVPS 744
BLAST of jgi.p|Trimin1|348571 vs. uniprot
Match: I4HEZ4_MICAE (PEP-CTERM domain-containing protein n=1 Tax=Microcystis aeruginosa PCC 9807 TaxID=1160283 RepID=I4HEZ4_MICAE) HSP 1 Score: 57.4 bits (137), Expect = 1.130e-5 Identity = 38/114 (33.33%), Postives = 61/114 (53.51%), Query Frame = 1 Query: 208 AVSLPWAFNFLGVEYSTVYISRDGFVSFDALSVGAATSGPTSVVPSVVAPSNAIFAFWSNLVYPASSSTYRPRTQYEMADS---DTFIVSWFSTETLLE-PAGTFELVLHKNGN 537 A+SL + F+F G YS VY+S +GF++F+ S SGP S+ PSN + FW++L P + +P Y+ S F+V +++ + P TFE++LH+ N Sbjct: 77 AISLGFNFDFYGNTYSQVYVSSNGFLTFNPGSDDGCCSGP-SLPDGNSDPSNLVAGFWNDLYPPLT----QPNIFYQTTGSPGSQEFVVGFYNVPNFFDGPQVTFEMILHEGSN 185
BLAST of jgi.p|Trimin1|348571 vs. uniprot
Match: A0A2M7WKM0_9BACT (Por_Secre_tail domain-containing protein (Fragment) n=1 Tax=candidate division Zixibacteria bacterium CG_4_9_14_3_um_filter_46_8 TaxID=1975520 RepID=A0A2M7WKM0_9BACT) HSP 1 Score: 56.6 bits (135), Expect = 5.400e-5 Identity = 35/123 (28.46%), Postives = 64/123 (52.03%), Query Frame = 1 Query: 196 TDYAAVSLPWAFNFLGVEYSTVYISRDGFVSFDALSVGAATSGPTSVVPSVVAPSNAIFAFWSNLVYPASSSTYRPRTQYEMADSDTFIVSWFSTETLLEPAG-TFELVLHKNGNFDINLSSM 561 T+ +LP+ FN+ GV Y+++ + +G++SF++ S TS + +PS AP+N + A W +L A+ + YR T +DT I++W + + TFE+++ G +M Sbjct: 172 TNTGPYTLPFVFNYYGVNYNSIRVCSNGWISFNSSS----TSYSNTNIPSPSAPTNMLGAMWDDLNPGAAGTVYRYIT------ADTAIIAWVNVPHYYDSGSYTFEIIITSGGAITFQYQTM 284 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348571 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_6923 ID=mRNA_6923|Name=jgi.p|Trimin1|348571|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1206bp|location=Sequence derived from alignment at Contig_27:423440..426397+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGACGCTGCGGATGCTGTGGTACCGGGCAGCCTGCTTGCTTGTCCTGGCback to top protein sequence of jgi.p|Trimin1|348571 >Trimin1|348571|estExt_Genemark1.C_Ctg_270046 ID=Trimin1|348571|estExt_Genemark1.C_Ctg_270046|Name=jgi.p|Trimin1|348571|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=402bp MTLRMLWYRAACLLVLATLGNAVTCTNSSAVAVPGYKLALTSTSVYELGAback to top mRNA from alignment at Contig_27:423440..426397+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_6923 ID=mRNA_6923|Name=jgi.p|Trimin1|348571|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2958bp|location=Sequence derived from alignment at Contig_27:423440..426397+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_27:423440..426397+ >mRNA_6923 ID=mRNA_6923|Name=jgi.p|Trimin1|348571|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1206bp|location=Sequence derived from alignment at Contig_27:423440..426397+ (Tribonema minus UTEX_B_3156 )back to top |