mRNA_6912 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|348564 vs. uniprot
Match: A0A835YXT0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXT0_9STRA) HSP 1 Score: 557 bits (1436), Expect = 1.650e-199 Identity = 279/279 (100.00%), Postives = 279/279 (100.00%), Query Frame = 1 Query: 10 MSHADAAVVQVAYHHGQYLFPGFAGDTFTKTFRINGLRSIKATSGQMTAYGIICEVINQHGRVCFVAEKTLLFPWKIPPSEATAEPQPPRQQTLKEHFINQSEKLLALGGTSLSRLRAGQLSMALSSLGRLNHDRHYNTVKYSGDELMIPGGLVYALSTAATARDLHEILHEELVNCNFINPLRPGDVMGCISYISAAETHVNGVLERLTVKTIGIKGMDVRDLKGQPLPLALFTTPKLRTKRVEEICAKECPELSKRIVVISERTIMRQAPKTDMFLL 846 MSHADAAVVQVAYHHGQYLFPGFAGDTFTKTFRINGLRSIKATSGQMTAYGIICEVINQHGRVCFVAEKTLLFPWKIPPSEATAEPQPPRQQTLKEHFINQSEKLLALGGTSLSRLRAGQLSMALSSLGRLNHDRHYNTVKYSGDELMIPGGLVYALSTAATARDLHEILHEELVNCNFINPLRPGDVMGCISYISAAETHVNGVLERLTVKTIGIKGMDVRDLKGQPLPLALFTTPKLRTKRVEEICAKECPELSKRIVVISERTIMRQAPKTDMFLL Sbjct: 1 MSHADAAVVQVAYHHGQYLFPGFAGDTFTKTFRINGLRSIKATSGQMTAYGIICEVINQHGRVCFVAEKTLLFPWKIPPSEATAEPQPPRQQTLKEHFINQSEKLLALGGTSLSRLRAGQLSMALSSLGRLNHDRHYNTVKYSGDELMIPGGLVYALSTAATARDLHEILHEELVNCNFINPLRPGDVMGCISYISAAETHVNGVLERLTVKTIGIKGMDVRDLKGQPLPLALFTTPKLRTKRVEEICAKECPELSKRIVVISERTIMRQAPKTDMFLL 279
BLAST of jgi.p|Trimin1|348564 vs. uniprot
Match: A0A6H5KU73_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU73_9PHAE) HSP 1 Score: 303 bits (775), Expect = 5.020e-98 Identity = 158/299 (52.84%), Postives = 202/299 (67.56%), Query Frame = 1 Query: 7 SMSHADAAVVQVAYHHGQYLFPGFAGDTFTKTFRINGLRSIKATSGQMTAYGIICEVINQHGRVCFVAEKTLLFPWKIPPSE----ATAEPQPPRQQT--LKEHFINQSEKLLALGGTSLSRLRAGQL-------------SMALSSLGRLNHDRHYNTVKYSGDELMIPGGLVYALSTAATARDLHEILHEELVNCNFINPLRPGDVMGCISYISAAETHVNGVLERLTVKTIGIKGMDVRDLKGQPLPLALFTTPKLRTKRVEEICAKECPELSKRIVVISERTIMRQAPKTDMFLL 846 SMSH +AA+ QVAY + +YL+PGFAGDTFTKTF I G+R+ + + + Y C ++NQ G+VC ++T +FP+ PPS AT E QPP + L++H + QSEKL LGG +L R AGQL SM LSSL RL H RH++TVK+ D L IP GL+ AL+T+ +ARDLHE+LHEEL+ NFINP RPGD M I+Y+ E H NGVLE+L V+TIGIK + DL G PLPL LF LRTK VE+IC + CPEL +IVV++ER ++RQAPKTD+FLL Sbjct: 52 SMSHVEAAMTQVAYRNARYLWPGFAGDTFTKTFEIKGIRN--TSDKERSTYDFTCRLVNQRGKVCMECDRTTMFPFFAPPSPRDSTATPEEQPPPEPADRLRDHVVKQSEKLAELGGQTLRRFSAGQLIIHTPARPISRTQSMELSSLARLTHSRHFDTVKHGEDGLAIPAGLIVALATSLSARDLHEVLHEELIYANFINPFRPGDAMTSITYVQRVEQHPNGVLEKLRVRTIGIKDILTDDLTGMPLPLELFVDKGLRTKGVEQICRESCPELCGKIVVLAEREVIRQAPKTDVFLL 348
BLAST of jgi.p|Trimin1|348564 vs. uniprot
Match: D7FKH2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKH2_ECTSI) HSP 1 Score: 300 bits (767), Expect = 4.580e-96 Identity = 157/299 (52.51%), Postives = 201/299 (67.22%), Query Frame = 1 Query: 7 SMSHADAAVVQVAYHHGQYLFPGFAGDTFTKTFRINGLRSIKATSGQMTAYGIICEVINQHGRVCFVAEKTLLFPWKIPPSE----ATAEPQPPRQQT--LKEHFINQSEKLLALGGTSLSRLRAGQL-------------SMALSSLGRLNHDRHYNTVKYSGDELMIPGGLVYALSTAATARDLHEILHEELVNCNFINPLRPGDVMGCISYISAAETHVNGVLERLTVKTIGIKGMDVRDLKGQPLPLALFTTPKLRTKRVEEICAKECPELSKRIVVISERTIMRQAPKTDMFLL 846 SMSH +AA+ QVAY + +YL+PGFAGDTFTK F I G+R+ + + + Y C ++NQ G+VC ++T +FP+ PPS AT E QPP + L++H + QSEKL LGG +L R AGQL SM LSSL RL H RH++TVK+ D L IP GL+ AL+T+ +ARDLHE+LHEEL+ NFINP RPGD M I+Y+ E H NGVLE+L V+TIGIK + DL G PLPL LF LRTK VE+IC + CPEL +IVV++ER ++RQAPKTD+FLL Sbjct: 107 SMSHVEAAMTQVAYRNARYLWPGFAGDTFTKAFEIKGIRN--TSDKERSTYDFTCRLVNQRGKVCMECDRTTMFPFFAPPSPRDSTATPEEQPPPKPADRLRDHVVKQSEKLAELGGQTLRRFSAGQLIIHTPARPISRTQSMELSSLARLTHSRHFDTVKHGEDGLAIPAGLIVALATSLSARDLHEVLHEELMYANFINPFRPGDAMTSITYVQRVEQHPNGVLEKLRVRTIGIKDILTDDLTGMPLPLELFVDEGLRTKGVEQICRESCPELCGKIVVLAEREVIRQAPKTDVFLL 403
BLAST of jgi.p|Trimin1|348564 vs. uniprot
Match: A0A7S2RYC8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RYC8_9STRA) HSP 1 Score: 258 bits (658), Expect = 1.850e-79 Identity = 139/301 (46.18%), Postives = 194/301 (64.45%), Query Frame = 1 Query: 1 AGSMSHADAAVVQVAYHHGQYLFPGFAGDTFTKTFRINGLRSIKATSGQMTAYGIICEVINQHGRVCFVAEKTLLFPWKI--PPSEATAEPQPPR---QQTLKEHFINQSEKLLALGGTSLSRLRAGQL-------------SMALSSLGRLNHDRHYNTVKYSGDELMIPGGLVYALSTAATARDLHEILHEELVNCNFINPLRPGDVMGCISYISAAETHVNGVLERLTVKTIGIKGMDV-RDLKGQPLPLALFTTPKLRTKRVEEICAKECPELSKRIVVISERTIMRQAPKTDMFLL 846 AGSM+HADAA VQV YH+ Y +P F+GDTFT+TF I R+ + G+ + + C + NQ GRV F +KT+LFP+K+ P A+A P ++ LK+H I + K+ LG SL+ LR GQL M LSSL RL H+RH+N Y+ DE+ IPGGLV L+ +A+ARDLHE+LHE+++ C++IN L PGD +G IS++ A E ++ G +E LT++T+G+K +DV R+L+G LP+ LFT R + E++C +ECP LS RIV ER I+RQ PK + FLL Sbjct: 122 AGSMTHADAAKVQVGYHNAIYHWPAFSGDTFTRTFHIKSRRT--TSDGENSIFTFNCVLKNQRGRVVFTTDKTMLFPFKLNGPDELASATPAVAMGGAKEDLKKHIIESASKIGPLGSQSLTALRPGQLILHSLCRPLSATQCMQLSSLARLTHERHFNHHVYNIDEIYIPGGLVLGLTASASARDLHEVLHEDVLQCSYINNLHPGDTVGAISFVKAMEENITGDMEMLTIRTVGVKNIDVQRELQGMALPVRLFTESVKRPRDYEQLCKEECPILSNRIVACLERRILRQTPKAEAFLL 420
BLAST of jgi.p|Trimin1|348564 vs. uniprot
Match: A0A7S2UZD2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZD2_9STRA) HSP 1 Score: 255 bits (651), Expect = 1.650e-78 Identity = 141/296 (47.64%), Postives = 199/296 (67.23%), Query Frame = 1 Query: 4 GSMSHADAAVVQVAYHHGQYLFPGFAGDTFTKTFRINGLRSIKATSGQM-TAYGIICEVINQHGRVCFVAEKTLLFPWKIPPSEATAEPQPPRQQTLKEHFINQSEKLLALGGTSLSRLRAGQL-------------SMALSSLGRLNHDRHYNTVKYSGDELMIPGGLVYALSTAATARDLHEILHEELVNCNFINPLRPGDVMGCISYISAAETHVNGVLERLTVKTIGIKGMDV-RDLKGQPLPLALFTTPKLRTKRVEEICAKECPELSKRIVVISERTIMRQAPKTDMFLL 846 GSMSH D A VA++ +Y +PGFAGDTF K R+ LR TS Q T + +C++ NQ G++ F +EKTL+FP+ +PPS+ E +P + ++L++HF+ ++E L ALG SL +LR GQL +M L+SL RL H+RH+N + DE+++PGG + L +AT+RDLHEILHEE+ + +NPLRPGD+MG ISYI + + +++G LE L +KT+GIK MD R L G+ LP++LF L K +E+IC+ CPELS +IVV +ER IMRQAPK ++FLL Sbjct: 122 GSMSHIDEAKSHVAWNKSRYHWPGFAGDTFRKNVRVLSLRH---TSDQKNTLFTFLCKLENQRGQLVFSSEKTLMFPFLVPPSDVVFERRP-QDRSLQDHFVQRAETLEALGNQSLRKLRPGQLILHTMCRPLTQTQTMQLASLMRLTHERHFNRNIFKQDEILVPGGCIMGLMMSATSRDLHEILHEEVQSAALMNPLRPGDMMGAISYIKSVDENLSGDLEVLHIKTLGIKNMDPHRALIGKKLPVSLFQDT-LLPKEIEKICSDHCPELSHKIVVQAEREIMRQAPKREVFLL 412
BLAST of jgi.p|Trimin1|348564 vs. uniprot
Match: A0A7S4JXC3_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JXC3_9STRA) HSP 1 Score: 236 bits (602), Expect = 2.030e-71 Identity = 135/298 (45.30%), Postives = 193/298 (64.77%), Query Frame = 1 Query: 7 SMSHADAAVVQVAYHHGQYLFPGFAGDTFTKTFRINGLRSIKATS-GQMTAYGIICEVINQHGRVCFVAEKTLLFPWKIPPS--EATAEPQPPRQQTLKEHFINQSEKLLALGGTSLSRLRAGQL-------------SMALSSLGRLNHDRHYNTVKYS-GDELMIPGGLVYALSTAATARDLHEILHEELVNCNFINPLRPGDVMGCISYISAAETHVNGVLERLTVKTIGIKGMDV-RDLKGQPLPLALFTTPKLRTKRVEEICAKECPELSKRIVVISERTIMRQAPKTDMFLL 846 SM+HADAA VQV + + Y +P FAGDTFTK+F++ RSI+ TS G + + CE+INQ GRVC A+K L+F + +P S E A+ + Q ++H I++S+ L LG SL+ L GQL S L+SL RL H RH++T +Y E+ IPGGLV L+ +A +RD+HEILHEE++N +F++ L PG+V+G ISY+ + + + G LE + V+TIG+K MDV RDLK PLPL LFT T+++E+IC + CP L+ +IV+ +R I+RQA + + FLL Sbjct: 99 SMTHADAAKVQVGFGNAVYHWPAFAGDTFTKSFKV---RSIRNTSDGHHSIFHFECELINQRGRVCMSADKYLIFEFTVPESHVELPAD-SATKGQMFRDHLISKSDSLHDLGSHSLTTLFPGQLVLHTMNRSITFSQSQQLASLARLTHPRHFDTRRYDIHTEIFIPGGLVLGLTMSAASRDMHEILHEEILNASFVHHLHPGNVVGAISYVQSLDDGLPGDLESIVVRTIGVKNMDVSRDLKDTPLPLELFTGDAKTTQQIEKICKERCPMLANKIVLQLDRRILRQASRNETFLL 392
BLAST of jgi.p|Trimin1|348564 vs. uniprot
Match: A0A7S2UCF5_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UCF5_9STRA) HSP 1 Score: 236 bits (601), Expect = 9.790e-71 Identity = 133/302 (44.04%), Postives = 185/302 (61.26%), Query Frame = 1 Query: 7 SMSHADAAVVQVAYHHGQYLFPGFAGDTFTKTFRINGLRSIKATSGQMTAYGIICEVINQHGRVCFVAEKTLLFPWKIPPSEATA------EPQPPRQQTLKEHFINQSEKLLALGGTSLSRLRAGQL-------------SMALSSLGRLNHDRHYNTVKYSGD-ELMIPGGLVYALSTAATARDLHEILHEELVNCNFINPLRPGDVMGCISYISAAETHVNGVLERLTVKTIGIKGMD-VRDL-KGQPLPLALFTTPKLRTKRVEEICAKECPELSKRIVVISERTIMRQAPKTDMFLL 846 SM+HADAA VQV + + Y +P FAGDTFTK F + +R+ + G + CE++N GRVC A+K +LF + I + E Q ++H +++S L LG SL LR GQL SM L+SL RL H+RH++ KYS D E++ PGGLV L+T+A++RDLHEILHEEL+N F+N L P +V+G +SY+ + + + G LE L V+TIG+K +D VRDL G LPL LFT K+ TK +E IC + CP+LS +I+V +R I+RQ+ D+FLL Sbjct: 138 SMTHADAAKVQVGFENVTYHWPCFAGDTFTKNFLVKSVRT--TSDGNHSVIKFYCELVNHRGRVCMSADKQMLFEFPITGGSSNVSSVGRMEQDSENNQLFRDHLLSKSMTLAELGSQSLKALRPGQLIFHTMYRSITLAQSMQLASLARLTHERHFDLRKYSVDTEILCPGGLVVGLTTSASSRDLHEILHEELLNVTFVNALHPNNVVGAMSYVQSVDDTIPGDLEMLLVRTIGVKNVDLVRDLGDGAHLPLELFTRTKMTTKEIERICKEHCPKLSNKIIVQMDRRIIRQSSHNDVFLL 437
BLAST of jgi.p|Trimin1|348564 vs. uniprot
Match: A0A7S2F3A4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F3A4_9STRA) HSP 1 Score: 224 bits (572), Expect = 1.930e-66 Identity = 126/300 (42.00%), Postives = 184/300 (61.33%), Query Frame = 1 Query: 4 GSMSHADAAVVQVAYHHGQYLFPGFAGDTFTKTFRINGLRSIKATSGQMTAYGIICEVINQHGRVCFVAEKTLLFPWKIPPSEAT----AEPQPPRQQTLKEHFINQ-SEKLLALGGTSLSRLRAGQL---SMA----------LSSLGRLNHDRHYNTVKYSGDELMIPGGLVYALSTAATARDLHEILHEELVNCNFINPLRPGDVMGCISYISAAETHVNGVLERLTVKTIGIKGMDV-RDLKGQPLPLALFTTPKLRTKRVEEICAKECPELSKRIVVISERTIMRQAPKTDMFLL 846 GSMSHADAA VQV Y +G Y FP + GDTFT+ +I R+ +SG+ + + CE+ NQ G+V F+ +K++LFP+ + + + +P + +H +++ E+ + + G SL+ LR GQL SMA LSS+ +L H+RH+N + + +PGGLV L +A+ARDLHE+LHEELV+C FIN L PGD +G +S + + E +V G +E + ++TIG+K +DV R+L P+P LF+ R + EEIC + CP L K+IV ER I+RQAP MFLL Sbjct: 138 GSMSHADAAKVQVGYTNGHYCFPAYPGDTFTRRLQIKSRRN--TSSGENSLFTFQCELRNQRGQVVFITDKSMLFPFVLDDNSSVEYDPVAERPFSTSDMMKHLVDKFQEQEVDIRGQSLNTLRPGQLLLHSMARPLSTTQIMQLSSIAKLTHERHFNHHVFDIANIYVPGGLVLGLVQSASARDLHEVLHEELVDCKFINNLHPGDTVGALSMVKSVEENVTGEIESIVLRTIGVKNLDVGRELNQVPIPRELFSGKVDRPRAYEEICERGCPILHKKIVACVERRILRQAPSQGMFLL 435
BLAST of jgi.p|Trimin1|348564 vs. uniprot
Match: W7TH19_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TH19_9STRA) HSP 1 Score: 208 bits (529), Expect = 1.110e-62 Identity = 113/224 (50.45%), Postives = 148/224 (66.07%), Query Frame = 1 Query: 220 LLFPWKIPPSEATAEPQ-PPRQQTLKEHFINQSEKLLALGGTSLSRLRAGQL-------------SMALSSLGRLNHDRHYNTVKYSGDELMIPGGLVYALSTAATARDLHEILHEELVNCNFINPLRPGDVMGCISYISAAETHVNGVLERLTVKTIGIKGMDVR-DLKGQPLPLALFTTPKLRTKRVEEICAKECPELSKRIVVISERTIMRQAPKTDMFLL 846 ++FP +P S T PPR L+EH +++++ L ALG SL LR GQL SM LSSLGRL H+RH+NT K+ DE+ IPGGLV L+ +A+ARDLHE+LHEE++ C FIN L P D++ SYI + ++ G LE LT++TIG+K +DV DL Q PLALFTTP LRTK +E +C PELSK+IV + ER I+RQ+PKT+ FLL Sbjct: 1 MIFPIVLPASNVTFPVAVPPR--LLEEHLVSRADSLHALGSQSLQSLRPGQLLLHSLARPLSPAQSMQLSSLGRLTHERHFNTRKFKRDEMYIPGGLVLGLTLSASARDLHEVLHEEVIECAFINHLHPWDIVSSFSYIKEMDENITGDLEALTLRTIGVKNVDVHLDLLDQAFPLALFTTPSLRTKHMEALCKAHIPELSKKIVCVVERRILRQSPKTEAFLL 222
BLAST of jgi.p|Trimin1|348564 vs. uniprot
Match: A0A812SDL1_SYMMI (Mch protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812SDL1_SYMMI) HSP 1 Score: 213 bits (541), Expect = 2.640e-62 Identity = 115/278 (41.37%), Postives = 172/278 (61.87%), Query Frame = 1 Query: 1 AGSMSHADAAVVQVAYHHGQYLFPGFAGDTFTKTFRINGLRSIKATSGQMTAYGIICEVINQHGRVCFVAEKTLLFPWKIPPSEATAE-PQPPRQQTLKEHFINQSEKLLALGGTSLSRLRAGQLS-------------MALSSLGRLNHDRHYNTVKYSGDELMIPGGLVYALSTAATARDLHEILHEELVNCNFINPLRPGDVMGCISYISAAETHVNGVLERLTVKTIGIKGMDVRD-LKGQPLPLALFTTPKLRTK-RVEEICAKECPELSKRI 786 AGSMSHAD A +Q+ + G Y +P FAGDTF K F I LR+ + G + I CE+ NQ F EK ++FP+++PPS+ + + +T + ++ S+KL +LG +LS LR GQL M L++L RLNH+RH+NT K+S DE+++PGGLVY+L+T+ +RDLHE++ EELVNC F N L PG+ + +++I HV+G LE + ++T+ +K +V L+G LP LF T + ++E+I K+CP+LSK+I Sbjct: 118 AGSMSHADHAKIQLGFGVGVYHWPAFAGDTFRKKFVIRRLRT--TSDGNHSIATIACEIRNQRDVNLFTCEKHMMFPFRVPPSDVVVPVTEEAKSETFLNYLVSNSDKLSSLGSHTLSHLRPGQLIFHTLVRPLSPTLVMQLATLARLNHERHFNTRKFSADEILVPGGLVYSLATSLASRDLHEVIFEELVNCAFPNNLAPGETVSAMTFIRHLSEHVSGDLEEVDIRTVAVKNTEVHSALEGVQLPAELFATADIHMPAQLEDILKKKCPQLSKKI 393 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348564 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_6912 ID=mRNA_6912|Name=jgi.p|Trimin1|348564|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1036bp|location=Sequence derived from alignment at Contig_27:334675..339701- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GCGGGATCCATGAGCCATGCGGACGCCGCAGTGGTACAGGTGGCATACCAback to top protein sequence of jgi.p|Trimin1|348564 >Trimin1|348564|estExt_Genemark1.C_Ctg_270038 ID=Trimin1|348564|estExt_Genemark1.C_Ctg_270038|Name=jgi.p|Trimin1|348564|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=280bp MSHADAAVVQVAYHHGQYLFPGFAGDTFTKTFRINGLRSIKATSGQMTAYback to top mRNA from alignment at Contig_27:334675..339701- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_6912 ID=mRNA_6912|Name=jgi.p|Trimin1|348564|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5027bp|location=Sequence derived from alignment at Contig_27:334675..339701- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_27:334675..339701- >mRNA_6912 ID=mRNA_6912|Name=jgi.p|Trimin1|348564|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=840bp|location=Sequence derived from alignment at Contig_27:334675..339701- (Tribonema minus UTEX_B_3156 )back to top |