mRNA_6912 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|348564
Unique NamemRNA_6912
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|348564 vs. uniprot
Match: A0A835YXT0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXT0_9STRA)

HSP 1 Score: 557 bits (1436), Expect = 1.650e-199
Identity = 279/279 (100.00%), Postives = 279/279 (100.00%), Query Frame = 1
Query:   10 MSHADAAVVQVAYHHGQYLFPGFAGDTFTKTFRINGLRSIKATSGQMTAYGIICEVINQHGRVCFVAEKTLLFPWKIPPSEATAEPQPPRQQTLKEHFINQSEKLLALGGTSLSRLRAGQLSMALSSLGRLNHDRHYNTVKYSGDELMIPGGLVYALSTAATARDLHEILHEELVNCNFINPLRPGDVMGCISYISAAETHVNGVLERLTVKTIGIKGMDVRDLKGQPLPLALFTTPKLRTKRVEEICAKECPELSKRIVVISERTIMRQAPKTDMFLL 846
            MSHADAAVVQVAYHHGQYLFPGFAGDTFTKTFRINGLRSIKATSGQMTAYGIICEVINQHGRVCFVAEKTLLFPWKIPPSEATAEPQPPRQQTLKEHFINQSEKLLALGGTSLSRLRAGQLSMALSSLGRLNHDRHYNTVKYSGDELMIPGGLVYALSTAATARDLHEILHEELVNCNFINPLRPGDVMGCISYISAAETHVNGVLERLTVKTIGIKGMDVRDLKGQPLPLALFTTPKLRTKRVEEICAKECPELSKRIVVISERTIMRQAPKTDMFLL
Sbjct:    1 MSHADAAVVQVAYHHGQYLFPGFAGDTFTKTFRINGLRSIKATSGQMTAYGIICEVINQHGRVCFVAEKTLLFPWKIPPSEATAEPQPPRQQTLKEHFINQSEKLLALGGTSLSRLRAGQLSMALSSLGRLNHDRHYNTVKYSGDELMIPGGLVYALSTAATARDLHEILHEELVNCNFINPLRPGDVMGCISYISAAETHVNGVLERLTVKTIGIKGMDVRDLKGQPLPLALFTTPKLRTKRVEEICAKECPELSKRIVVISERTIMRQAPKTDMFLL 279          
BLAST of jgi.p|Trimin1|348564 vs. uniprot
Match: A0A6H5KU73_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU73_9PHAE)

HSP 1 Score: 303 bits (775), Expect = 5.020e-98
Identity = 158/299 (52.84%), Postives = 202/299 (67.56%), Query Frame = 1
Query:    7 SMSHADAAVVQVAYHHGQYLFPGFAGDTFTKTFRINGLRSIKATSGQMTAYGIICEVINQHGRVCFVAEKTLLFPWKIPPSE----ATAEPQPPRQQT--LKEHFINQSEKLLALGGTSLSRLRAGQL-------------SMALSSLGRLNHDRHYNTVKYSGDELMIPGGLVYALSTAATARDLHEILHEELVNCNFINPLRPGDVMGCISYISAAETHVNGVLERLTVKTIGIKGMDVRDLKGQPLPLALFTTPKLRTKRVEEICAKECPELSKRIVVISERTIMRQAPKTDMFLL 846
            SMSH +AA+ QVAY + +YL+PGFAGDTFTKTF I G+R+   +  + + Y   C ++NQ G+VC   ++T +FP+  PPS     AT E QPP +    L++H + QSEKL  LGG +L R  AGQL             SM LSSL RL H RH++TVK+  D L IP GL+ AL+T+ +ARDLHE+LHEEL+  NFINP RPGD M  I+Y+   E H NGVLE+L V+TIGIK +   DL G PLPL LF    LRTK VE+IC + CPEL  +IVV++ER ++RQAPKTD+FLL
Sbjct:   52 SMSHVEAAMTQVAYRNARYLWPGFAGDTFTKTFEIKGIRN--TSDKERSTYDFTCRLVNQRGKVCMECDRTTMFPFFAPPSPRDSTATPEEQPPPEPADRLRDHVVKQSEKLAELGGQTLRRFSAGQLIIHTPARPISRTQSMELSSLARLTHSRHFDTVKHGEDGLAIPAGLIVALATSLSARDLHEVLHEELIYANFINPFRPGDAMTSITYVQRVEQHPNGVLEKLRVRTIGIKDILTDDLTGMPLPLELFVDKGLRTKGVEQICRESCPELCGKIVVLAEREVIRQAPKTDVFLL 348          
BLAST of jgi.p|Trimin1|348564 vs. uniprot
Match: D7FKH2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKH2_ECTSI)

HSP 1 Score: 300 bits (767), Expect = 4.580e-96
Identity = 157/299 (52.51%), Postives = 201/299 (67.22%), Query Frame = 1
Query:    7 SMSHADAAVVQVAYHHGQYLFPGFAGDTFTKTFRINGLRSIKATSGQMTAYGIICEVINQHGRVCFVAEKTLLFPWKIPPSE----ATAEPQPPRQQT--LKEHFINQSEKLLALGGTSLSRLRAGQL-------------SMALSSLGRLNHDRHYNTVKYSGDELMIPGGLVYALSTAATARDLHEILHEELVNCNFINPLRPGDVMGCISYISAAETHVNGVLERLTVKTIGIKGMDVRDLKGQPLPLALFTTPKLRTKRVEEICAKECPELSKRIVVISERTIMRQAPKTDMFLL 846
            SMSH +AA+ QVAY + +YL+PGFAGDTFTK F I G+R+   +  + + Y   C ++NQ G+VC   ++T +FP+  PPS     AT E QPP +    L++H + QSEKL  LGG +L R  AGQL             SM LSSL RL H RH++TVK+  D L IP GL+ AL+T+ +ARDLHE+LHEEL+  NFINP RPGD M  I+Y+   E H NGVLE+L V+TIGIK +   DL G PLPL LF    LRTK VE+IC + CPEL  +IVV++ER ++RQAPKTD+FLL
Sbjct:  107 SMSHVEAAMTQVAYRNARYLWPGFAGDTFTKAFEIKGIRN--TSDKERSTYDFTCRLVNQRGKVCMECDRTTMFPFFAPPSPRDSTATPEEQPPPKPADRLRDHVVKQSEKLAELGGQTLRRFSAGQLIIHTPARPISRTQSMELSSLARLTHSRHFDTVKHGEDGLAIPAGLIVALATSLSARDLHEVLHEELMYANFINPFRPGDAMTSITYVQRVEQHPNGVLEKLRVRTIGIKDILTDDLTGMPLPLELFVDEGLRTKGVEQICRESCPELCGKIVVLAEREVIRQAPKTDVFLL 403          
BLAST of jgi.p|Trimin1|348564 vs. uniprot
Match: A0A7S2RYC8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RYC8_9STRA)

HSP 1 Score: 258 bits (658), Expect = 1.850e-79
Identity = 139/301 (46.18%), Postives = 194/301 (64.45%), Query Frame = 1
Query:    1 AGSMSHADAAVVQVAYHHGQYLFPGFAGDTFTKTFRINGLRSIKATSGQMTAYGIICEVINQHGRVCFVAEKTLLFPWKI--PPSEATAEPQPPR---QQTLKEHFINQSEKLLALGGTSLSRLRAGQL-------------SMALSSLGRLNHDRHYNTVKYSGDELMIPGGLVYALSTAATARDLHEILHEELVNCNFINPLRPGDVMGCISYISAAETHVNGVLERLTVKTIGIKGMDV-RDLKGQPLPLALFTTPKLRTKRVEEICAKECPELSKRIVVISERTIMRQAPKTDMFLL 846
            AGSM+HADAA VQV YH+  Y +P F+GDTFT+TF I   R+   + G+ + +   C + NQ GRV F  +KT+LFP+K+  P   A+A P       ++ LK+H I  + K+  LG  SL+ LR GQL              M LSSL RL H+RH+N   Y+ DE+ IPGGLV  L+ +A+ARDLHE+LHE+++ C++IN L PGD +G IS++ A E ++ G +E LT++T+G+K +DV R+L+G  LP+ LFT    R +  E++C +ECP LS RIV   ER I+RQ PK + FLL
Sbjct:  122 AGSMTHADAAKVQVGYHNAIYHWPAFSGDTFTRTFHIKSRRT--TSDGENSIFTFNCVLKNQRGRVVFTTDKTMLFPFKLNGPDELASATPAVAMGGAKEDLKKHIIESASKIGPLGSQSLTALRPGQLILHSLCRPLSATQCMQLSSLARLTHERHFNHHVYNIDEIYIPGGLVLGLTASASARDLHEVLHEDVLQCSYINNLHPGDTVGAISFVKAMEENITGDMEMLTIRTVGVKNIDVQRELQGMALPVRLFTESVKRPRDYEQLCKEECPILSNRIVACLERRILRQTPKAEAFLL 420          
BLAST of jgi.p|Trimin1|348564 vs. uniprot
Match: A0A7S2UZD2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZD2_9STRA)

HSP 1 Score: 255 bits (651), Expect = 1.650e-78
Identity = 141/296 (47.64%), Postives = 199/296 (67.23%), Query Frame = 1
Query:    4 GSMSHADAAVVQVAYHHGQYLFPGFAGDTFTKTFRINGLRSIKATSGQM-TAYGIICEVINQHGRVCFVAEKTLLFPWKIPPSEATAEPQPPRQQTLKEHFINQSEKLLALGGTSLSRLRAGQL-------------SMALSSLGRLNHDRHYNTVKYSGDELMIPGGLVYALSTAATARDLHEILHEELVNCNFINPLRPGDVMGCISYISAAETHVNGVLERLTVKTIGIKGMDV-RDLKGQPLPLALFTTPKLRTKRVEEICAKECPELSKRIVVISERTIMRQAPKTDMFLL 846
            GSMSH D A   VA++  +Y +PGFAGDTF K  R+  LR    TS Q  T +  +C++ NQ G++ F +EKTL+FP+ +PPS+   E +P + ++L++HF+ ++E L ALG  SL +LR GQL             +M L+SL RL H+RH+N   +  DE+++PGG +  L  +AT+RDLHEILHEE+ +   +NPLRPGD+MG ISYI + + +++G LE L +KT+GIK MD  R L G+ LP++LF    L  K +E+IC+  CPELS +IVV +ER IMRQAPK ++FLL
Sbjct:  122 GSMSHIDEAKSHVAWNKSRYHWPGFAGDTFRKNVRVLSLRH---TSDQKNTLFTFLCKLENQRGQLVFSSEKTLMFPFLVPPSDVVFERRP-QDRSLQDHFVQRAETLEALGNQSLRKLRPGQLILHTMCRPLTQTQTMQLASLMRLTHERHFNRNIFKQDEILVPGGCIMGLMMSATSRDLHEILHEEVQSAALMNPLRPGDMMGAISYIKSVDENLSGDLEVLHIKTLGIKNMDPHRALIGKKLPVSLFQDT-LLPKEIEKICSDHCPELSHKIVVQAEREIMRQAPKREVFLL 412          
BLAST of jgi.p|Trimin1|348564 vs. uniprot
Match: A0A7S4JXC3_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JXC3_9STRA)

HSP 1 Score: 236 bits (602), Expect = 2.030e-71
Identity = 135/298 (45.30%), Postives = 193/298 (64.77%), Query Frame = 1
Query:    7 SMSHADAAVVQVAYHHGQYLFPGFAGDTFTKTFRINGLRSIKATS-GQMTAYGIICEVINQHGRVCFVAEKTLLFPWKIPPS--EATAEPQPPRQQTLKEHFINQSEKLLALGGTSLSRLRAGQL-------------SMALSSLGRLNHDRHYNTVKYS-GDELMIPGGLVYALSTAATARDLHEILHEELVNCNFINPLRPGDVMGCISYISAAETHVNGVLERLTVKTIGIKGMDV-RDLKGQPLPLALFTTPKLRTKRVEEICAKECPELSKRIVVISERTIMRQAPKTDMFLL 846
            SM+HADAA VQV + +  Y +P FAGDTFTK+F++   RSI+ TS G  + +   CE+INQ GRVC  A+K L+F + +P S  E  A+    + Q  ++H I++S+ L  LG  SL+ L  GQL             S  L+SL RL H RH++T +Y    E+ IPGGLV  L+ +A +RD+HEILHEE++N +F++ L PG+V+G ISY+ + +  + G LE + V+TIG+K MDV RDLK  PLPL LFT     T+++E+IC + CP L+ +IV+  +R I+RQA + + FLL
Sbjct:   99 SMTHADAAKVQVGFGNAVYHWPAFAGDTFTKSFKV---RSIRNTSDGHHSIFHFECELINQRGRVCMSADKYLIFEFTVPESHVELPAD-SATKGQMFRDHLISKSDSLHDLGSHSLTTLFPGQLVLHTMNRSITFSQSQQLASLARLTHPRHFDTRRYDIHTEIFIPGGLVLGLTMSAASRDMHEILHEEILNASFVHHLHPGNVVGAISYVQSLDDGLPGDLESIVVRTIGVKNMDVSRDLKDTPLPLELFTGDAKTTQQIEKICKERCPMLANKIVLQLDRRILRQASRNETFLL 392          
BLAST of jgi.p|Trimin1|348564 vs. uniprot
Match: A0A7S2UCF5_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UCF5_9STRA)

HSP 1 Score: 236 bits (601), Expect = 9.790e-71
Identity = 133/302 (44.04%), Postives = 185/302 (61.26%), Query Frame = 1
Query:    7 SMSHADAAVVQVAYHHGQYLFPGFAGDTFTKTFRINGLRSIKATSGQMTAYGIICEVINQHGRVCFVAEKTLLFPWKIPPSEATA------EPQPPRQQTLKEHFINQSEKLLALGGTSLSRLRAGQL-------------SMALSSLGRLNHDRHYNTVKYSGD-ELMIPGGLVYALSTAATARDLHEILHEELVNCNFINPLRPGDVMGCISYISAAETHVNGVLERLTVKTIGIKGMD-VRDL-KGQPLPLALFTTPKLRTKRVEEICAKECPELSKRIVVISERTIMRQAPKTDMFLL 846
            SM+HADAA VQV + +  Y +P FAGDTFTK F +  +R+   + G  +     CE++N  GRVC  A+K +LF + I    +        E      Q  ++H +++S  L  LG  SL  LR GQL             SM L+SL RL H+RH++  KYS D E++ PGGLV  L+T+A++RDLHEILHEEL+N  F+N L P +V+G +SY+ + +  + G LE L V+TIG+K +D VRDL  G  LPL LFT  K+ TK +E IC + CP+LS +I+V  +R I+RQ+   D+FLL
Sbjct:  138 SMTHADAAKVQVGFENVTYHWPCFAGDTFTKNFLVKSVRT--TSDGNHSVIKFYCELVNHRGRVCMSADKQMLFEFPITGGSSNVSSVGRMEQDSENNQLFRDHLLSKSMTLAELGSQSLKALRPGQLIFHTMYRSITLAQSMQLASLARLTHERHFDLRKYSVDTEILCPGGLVVGLTTSASSRDLHEILHEELLNVTFVNALHPNNVVGAMSYVQSVDDTIPGDLEMLLVRTIGVKNVDLVRDLGDGAHLPLELFTRTKMTTKEIERICKEHCPKLSNKIIVQMDRRIIRQSSHNDVFLL 437          
BLAST of jgi.p|Trimin1|348564 vs. uniprot
Match: A0A7S2F3A4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F3A4_9STRA)

HSP 1 Score: 224 bits (572), Expect = 1.930e-66
Identity = 126/300 (42.00%), Postives = 184/300 (61.33%), Query Frame = 1
Query:    4 GSMSHADAAVVQVAYHHGQYLFPGFAGDTFTKTFRINGLRSIKATSGQMTAYGIICEVINQHGRVCFVAEKTLLFPWKIPPSEAT----AEPQPPRQQTLKEHFINQ-SEKLLALGGTSLSRLRAGQL---SMA----------LSSLGRLNHDRHYNTVKYSGDELMIPGGLVYALSTAATARDLHEILHEELVNCNFINPLRPGDVMGCISYISAAETHVNGVLERLTVKTIGIKGMDV-RDLKGQPLPLALFTTPKLRTKRVEEICAKECPELSKRIVVISERTIMRQAPKTDMFLL 846
            GSMSHADAA VQV Y +G Y FP + GDTFT+  +I   R+   +SG+ + +   CE+ NQ G+V F+ +K++LFP+ +  + +        +P     + +H +++  E+ + + G SL+ LR GQL   SMA          LSS+ +L H+RH+N   +    + +PGGLV  L  +A+ARDLHE+LHEELV+C FIN L PGD +G +S + + E +V G +E + ++TIG+K +DV R+L   P+P  LF+    R +  EEIC + CP L K+IV   ER I+RQAP   MFLL
Sbjct:  138 GSMSHADAAKVQVGYTNGHYCFPAYPGDTFTRRLQIKSRRN--TSSGENSLFTFQCELRNQRGQVVFITDKSMLFPFVLDDNSSVEYDPVAERPFSTSDMMKHLVDKFQEQEVDIRGQSLNTLRPGQLLLHSMARPLSTTQIMQLSSIAKLTHERHFNHHVFDIANIYVPGGLVLGLVQSASARDLHEVLHEELVDCKFINNLHPGDTVGALSMVKSVEENVTGEIESIVLRTIGVKNLDVGRELNQVPIPRELFSGKVDRPRAYEEICERGCPILHKKIVACVERRILRQAPSQGMFLL 435          
BLAST of jgi.p|Trimin1|348564 vs. uniprot
Match: W7TH19_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TH19_9STRA)

HSP 1 Score: 208 bits (529), Expect = 1.110e-62
Identity = 113/224 (50.45%), Postives = 148/224 (66.07%), Query Frame = 1
Query:  220 LLFPWKIPPSEATAEPQ-PPRQQTLKEHFINQSEKLLALGGTSLSRLRAGQL-------------SMALSSLGRLNHDRHYNTVKYSGDELMIPGGLVYALSTAATARDLHEILHEELVNCNFINPLRPGDVMGCISYISAAETHVNGVLERLTVKTIGIKGMDVR-DLKGQPLPLALFTTPKLRTKRVEEICAKECPELSKRIVVISERTIMRQAPKTDMFLL 846
            ++FP  +P S  T     PPR   L+EH +++++ L ALG  SL  LR GQL             SM LSSLGRL H+RH+NT K+  DE+ IPGGLV  L+ +A+ARDLHE+LHEE++ C FIN L P D++   SYI   + ++ G LE LT++TIG+K +DV  DL  Q  PLALFTTP LRTK +E +C    PELSK+IV + ER I+RQ+PKT+ FLL
Sbjct:    1 MIFPIVLPASNVTFPVAVPPR--LLEEHLVSRADSLHALGSQSLQSLRPGQLLLHSLARPLSPAQSMQLSSLGRLTHERHFNTRKFKRDEMYIPGGLVLGLTLSASARDLHEVLHEEVIECAFINHLHPWDIVSSFSYIKEMDENITGDLEALTLRTIGVKNVDVHLDLLDQAFPLALFTTPSLRTKHMEALCKAHIPELSKKIVCVVERRILRQSPKTEAFLL 222          
BLAST of jgi.p|Trimin1|348564 vs. uniprot
Match: A0A812SDL1_SYMMI (Mch protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812SDL1_SYMMI)

HSP 1 Score: 213 bits (541), Expect = 2.640e-62
Identity = 115/278 (41.37%), Postives = 172/278 (61.87%), Query Frame = 1
Query:    1 AGSMSHADAAVVQVAYHHGQYLFPGFAGDTFTKTFRINGLRSIKATSGQMTAYGIICEVINQHGRVCFVAEKTLLFPWKIPPSEATAE-PQPPRQQTLKEHFINQSEKLLALGGTSLSRLRAGQLS-------------MALSSLGRLNHDRHYNTVKYSGDELMIPGGLVYALSTAATARDLHEILHEELVNCNFINPLRPGDVMGCISYISAAETHVNGVLERLTVKTIGIKGMDVRD-LKGQPLPLALFTTPKLRTK-RVEEICAKECPELSKRI 786
            AGSMSHAD A +Q+ +  G Y +P FAGDTF K F I  LR+   + G  +   I CE+ NQ     F  EK ++FP+++PPS+      +  + +T   + ++ S+KL +LG  +LS LR GQL              M L++L RLNH+RH+NT K+S DE+++PGGLVY+L+T+  +RDLHE++ EELVNC F N L PG+ +  +++I     HV+G LE + ++T+ +K  +V   L+G  LP  LF T  +    ++E+I  K+CP+LSK+I
Sbjct:  118 AGSMSHADHAKIQLGFGVGVYHWPAFAGDTFRKKFVIRRLRT--TSDGNHSIATIACEIRNQRDVNLFTCEKHMMFPFRVPPSDVVVPVTEEAKSETFLNYLVSNSDKLSSLGSHTLSHLRPGQLIFHTLVRPLSPTLVMQLATLARLNHERHFNTRKFSADEILVPGGLVYSLATSLASRDLHEVIFEELVNCAFPNNLAPGETVSAMTFIRHLSEHVSGDLEEVDIRTVAVKNTEVHSALEGVQLPAELFATADIHMPAQLEDILKKKCPQLSKKI 393          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348564 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YXT0_9STRA1.650e-199100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5KU73_9PHAE5.020e-9852.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FKH2_ECTSI4.580e-9652.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2RYC8_9STRA1.850e-7946.18Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2UZD2_9STRA1.650e-7847.64Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4JXC3_9STRA2.030e-7145.30Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7S2UCF5_9STRA9.790e-7144.04Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2F3A4_9STRA1.930e-6642.00Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
W7TH19_9STRA1.110e-6250.45Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A812SDL1_SYMMI2.640e-6241.37Mch protein n=1 Tax=Symbiodinium microadriaticum T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_27contigContig_27:334675..339701 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|348564|estExt_Genemark1.C_Ctg_270038
Descriptionmalyl-CoA lyase activity
COG categoryG
Max annot lvl2759|Eukaryota
EggNOG OGsCOG2301@1|root,2QWRT@2759|Eukaryota
Evalue1.02e-97
Seed ortholog2880.D7FKH2
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHotDog domain
Ec32 orthologEc-12_002090.1
TranscriptId348886
TrackFilteredModels1
ProteinId348564
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348564gene_6912Tribonema minus UTEX_B_3156 geneContig_27 334675..339701 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348564Trimin1|348564|estExt_Genemark1.C_Ctg_270038Tribonema minus UTEX_B_3156 polypeptideContig_27 334862..339692 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6912_10exon_6912_10Tribonema minus UTEX_B_3156 exonContig_27 334675..334972 -
exon_6912_9exon_6912_9Tribonema minus UTEX_B_3156 exonContig_27 335363..335503 -
exon_6912_8exon_6912_8Tribonema minus UTEX_B_3156 exonContig_27 336054..336137 -
exon_6912_7exon_6912_7Tribonema minus UTEX_B_3156 exonContig_27 336560..336636 -
exon_6912_6exon_6912_6Tribonema minus UTEX_B_3156 exonContig_27 337128..337191 -
exon_6912_5exon_6912_5Tribonema minus UTEX_B_3156 exonContig_27 337697..337747 -
exon_6912_4exon_6912_4Tribonema minus UTEX_B_3156 exonContig_27 338219..338323 -
exon_6912_3exon_6912_3Tribonema minus UTEX_B_3156 exonContig_27 338841..338957 -
exon_6912_2exon_6912_2Tribonema minus UTEX_B_3156 exonContig_27 339128..339187 -
exon_6912_1exon_6912_1Tribonema minus UTEX_B_3156 exonContig_27 339663..339701 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_6912UTR3_6912Tribonema minus UTEX_B_3156 three_prime_UTRContig_27 334675..334861 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6912CDS_6912Tribonema minus UTEX_B_3156 CDSContig_27 339663..339692 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_6912UTR5_6912Tribonema minus UTEX_B_3156 five_prime_UTRContig_27 339693..339701 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6912 ID=mRNA_6912|Name=jgi.p|Trimin1|348564|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1036bp|location=Sequence derived from alignment at Contig_27:334675..339701- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCGGGATCCATGAGCCATGCGGACGCCGCAGTGGTACAGGTGGCATACCA
CCACGGACAGTACCTGTTCCCAGGCTTCGCTGGGGATACTTTCACAAAGA
CGTTCCGCATCAACGGCCTCCGCAGCATCAAGGCAACGAGCGGACAGATG
ACGGCCTATGGTATCATCTGCGAGGTCATCAACCAGCACGGCCGGGTGTG
TTTTGTGGCTGAGAAGACGCTGCTGTTCCCCTGGAAGATTCCTCCATCGG
AAGCCACCGCAGAGCCCCAGCCTCCTAGGCAGCAGACCCTCAAGGAGCAC
TTCATCAACCAGTCAGAAAAGCTGCTGGCACTGGGAGGGACGTCCCTGAG
CCGCCTCAGGGCTGGGCAACTGTCCATGGCGCTGAGCTCGCTGGGCCGGC
TGAACCACGATCGACACTACAACACCGTCAAGTACAGTGGCGATGAGCTC
ATGATCCCAGGTGGGCTGGTGTATGCCCTGTCAACGGCTGCCACCGCACG
CGACCTGCACGAGATACTCCACGAGGAGCTCGTCAACTGCAACTTCATCA
ACCCTCTGCGCCCTGGAGATGTCATGGGCTGCATCTCCTACATTTCGGCC
GCCGAGACCCATGTGAATGGCGTGTTGGAGAGGCTGACAGTCAAGACAAT
TGGGATCAAGGGCATGGACGTGAGGGACTTGAAGGGCCAGCCTCTACCGC
TGGCGCTCTTCACAACCCCTAAGCTCAGGACCAAGCGGGTGGAGGAGATC
TGTGCCAAAGAGTGCCCGGAGCTGAGCAAGCGCATCGTGGTCATATCGGA
GCGCACCATAATGCGCCAGGCGCCCAAGACCGACATGTTCCTGCTGTGAA
AAGTGCCATGTGGCTCGTCTGTGTACATAGCATGCTCTCGCCGCAGGTCA
CCCGCATACAGTCTGACCATTTCTCGCTCGGTCCCACAACTACATGCTAT
CTTTTGTATTGATGTTAAATATAAGTTGAGGCTGTAGATCAGTCCATGCC
GCTGCCGCTGCCGTGGCGTAATGCAAAGAAGCTGGC
back to top

protein sequence of jgi.p|Trimin1|348564

>Trimin1|348564|estExt_Genemark1.C_Ctg_270038 ID=Trimin1|348564|estExt_Genemark1.C_Ctg_270038|Name=jgi.p|Trimin1|348564|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=280bp
MSHADAAVVQVAYHHGQYLFPGFAGDTFTKTFRINGLRSIKATSGQMTAY
GIICEVINQHGRVCFVAEKTLLFPWKIPPSEATAEPQPPRQQTLKEHFIN
QSEKLLALGGTSLSRLRAGQLSMALSSLGRLNHDRHYNTVKYSGDELMIP
GGLVYALSTAATARDLHEILHEELVNCNFINPLRPGDVMGCISYISAAET
HVNGVLERLTVKTIGIKGMDVRDLKGQPLPLALFTTPKLRTKRVEEICAK
ECPELSKRIVVISERTIMRQAPKTDMFLL*
back to top

mRNA from alignment at Contig_27:334675..339701-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6912 ID=mRNA_6912|Name=jgi.p|Trimin1|348564|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5027bp|location=Sequence derived from alignment at Contig_27:334675..339701- (Tribonema minus UTEX_B_3156 )
GCGGGATCCATGAGCCATGCGGACGCCGCAGTGGTACAGGTGAGGTAGCA CACCAGCTACAGATTGTACCTTTTTTTGTCTGGTCTGCCATGATGCGGGC CTCTTTATTGAAATATGTGCTGCTGCAGACCAAGCAATTGTCATTATTTT ATCCAGCCAAGCAGCACTGCCTGTGCCACACTACATGTTGCACTGGTAGA GGTGTCCACTTCAGTAAGTCTGCGCACACCTGATAGAACGCCCAGCAGCA TTCATCACCTGTCCCGCAATCATCATGCTCTCCCGCCAAGCAAAACGTGT GTGAGGTGCTCTGCTTGACAGAGGTGATTGCAATATACATGTACGTGCAC ATTATACTCTGGCACAAGTCTTTCAACATGCAGCTGATCGCAGCAACAAC CGCAATTACCAGGGGCACATGCTGTTTGCACAGCACATTTTTGTCAACAT AAGCTAATTGCGCCATTGCGGCAGTCATCACTAACACATTCCTGCTGTGT ACACACTGCCATAGGTGGCATACCACCACGGACAGTACCTGTTCCCAGGC TTCGCTGGGGATACTTTCACAAAGGTACGCGAGAACATGATCTGTATTTG TTGTTTGTTGCTGTGAGGCGGTATCCATTCTGATCAAAGTCCGCATTGGG CTTACCTTGCCTGCAGTGATGCTCATCCTGTGCCTGTTGCAAATGCCTTG ACACGCATACTGCTACTTGTGTGTTTCACGGAATTGTGTGGCAGACGTTC CGCATCAACGGCCTCCGCAGCATCAAGGCAACGAGCGGACAGATGACGGC CTATGGTATCATCTGCGAGGTCATCAACCAGCACGGCCGGGTGTGTTTTG TGGCTGAGAAGGTAAGGACGTGGGTGTTGCTCTCACAAGCCTGCAACCAA TTACCTATGGTTTATCAAATGTGCAGGGTATTGGGCTTGCCTTGCGGCCT TGTATGTGTGTTGTCCATGGCACCTTTGGCTCATTGCACATGCGCGGTAG GGGGCTGCCGGGGAAGCCTTGTGTTTTGGATGACCCGGCACAACAGCGCC AAAGCGTTGGTCAAGACGCAAAGTACGAGTGTCAGGGCATGCCCTTGGTT GTGCACTCAATGCAATAGTTGATAGCTCCAATGAGCATATCAGATGTTTC AGTGACTGTCATGGTCGCACGAGGCGAGCTATCATGGCAAAGCTAGGCGC TTGCTGGCGCACCACAATCACAGCATCCCGCGTTTTCATGAAGGCCTCTC ACATTTTCATAAAGGCCACCCAGAACCGTCCACACTCTTGGTCGGACGTG TTGTCCGCAGGAGCAGTGAGTTATGACTGATGCCATAAACTGATGCCATA AATATTGTGTATGGACACGTTTTTGCAGACGCTGCTGTTCCCCTGGAAGA TTCCTCCATCGGAAGCCACCGCAGAGCCCCAGCCTCCTAGGCAGCAGACC CTCAAGGAGCACTTCATCAACCAGTCAGAAAAGGTGAGCAGGATGCCTCA ACAGGAATCCATCACATATCCACAGCTGGCATGTGCTGATTGCAGTGCAT GTGCCGGTACCAAGCCAAAGTTCAAAGTGTCCATACTGGCGCGCAGCAGG ACCACTTGACCAACCATATGCGGCGCTCCTGTTCCGCTCACAGACTTTGG CATGCATGTGGTTACTGCGCGTGCATCTGAAAAGCAACGACCTTGTGTAC TACCTAACTTGCTCTACGTCAAGAGTATGTGCCATCATGTAATATCCAGG AAAGCATGCAGCCCTCGTCTCCTACCAACTTTAATGTGTTTTGTGCAGCC AGCAGCATGCGTGCATCACGCCGCCAACCTCTCCTTCGCCCGCAGGTCTC TTCTGTCGGCGGTTCTCGCTGGCCTGCTTAGCTGTGCACTGCTTGCCGGG GCACGCCCTGATGTTTTATCGCCATGTTGCTGCCGAATGTTGCTGCCGCC GCAGCTGCTGGCACTGGGAGGGACGTCCCTGAGCCGCCTCAGGGCTGGGC AACTGGTGAGCACTACAGTACACTTCCCACCTGACCAGCAATGCGTTCAT GTTTTCAGATCACTCAACAGCATGCAATTGCATCTATTACTGTGGTGCTT GGCCTTCACTGTAGGCCTGCCATAGTGAAATGAGACGTTGGTTTCATTTT GCTGCCTGCGTGGTGAGGTGCGCAGTCATAGAAACTGCAGGAAAGTTGTG GAGGGGGGAAATGCGTGCTTGACTATTTGGCATCAGTACCAGTGATGCTA CCAACCGTGGATCAATGCAGCTCATTGGTGATAGTTTCAATGCGTTTGTA TTTCAATGTTGTTTGGCTGGTCAGCCTGCACTAGCAATGCATGTTCATAC ATGCAAGTACTTCAAAACAAGTCTGTGCCATGGATTGATTGATTTTTCAT CTGGCACCGTGCAGCTTTGCATCTCACTCACCATACCGCGATCTCTCCGT GCCTGTTGCACGCTGCGGCAGATCATCCACAGCCATTGCCGCCCACTGAC TCTGACGCAGTCCATGGCGCTGAGCTCGCTGGGCCGGCTGAACCACGATC GACACTACAACACCGTCAAGTACAGTGAGTGCTGCCAACACTCAAGTACC TGGTTCACGCACATGTCAGCGTTTATGCACATGTCAGCGGGCACCGATCG TGTGCATCTGGCGAGAGTCATGCTTGGCCGCGCGAATTTCATGATGTCCA AAAGCGCTGCGGCTGCATTATTGATGAAAAACGAATCAAAAAGATCGTTG AGCTCTAGGTGACAAGGGATGGTTAGCCGCAAGTGCCTTCCACCAATAAT CGTGGTTGCCGCTGCTGCAGTCATTGGCCACGAGTCAAACAGTGCCACCA TAACCACAGTAGGCAAAAAGACTTCTGTGTGCAAGCTTTTTAGCGTTCGA GGCATGGGTGTTCAGTATTGATGTTTGGGTGCCATGCATCACGTAAAGGT GCGCTTGCAAGTAAGTTACAATGCCTGCGCAGACCAGTGCAGTCGTGCGC GTCACAGTGCTGTCATGGTCGTCAGTGCTGACGCTTGAGCGGTGCATGAT GATGTGCGTCTGCAGGTGGCGATGAGCTCATGATCCCAGGTGGGCTGGTG TATGCCCTGTCAACGGCTGCCACCGCACGCGACCTGCACGAGGTCAGTGC CTGCACCCCACACATGGCCGCTGGAAAGTGCAAGTTGGCATTGAAGTCGA GATTGTGCAGGTTCGTTCATGGCTTGACATGCTCAACGGACGATGAGCGC CAACGTATATGGGTTTACTCACCACCGTTGTACGCCACAATGCTGAGAGG GAACTTCGTCTCACTTAGTCAGTTTCACTCTCATGTTATAACATGCAGAG GTGCAGAGCGTTGTTTGCTCAGGCCAAGGTTTACTGCGGATTTCAGGTTG GGCGGCGGCTTAGAACAAGAACAATTTGAAATCCGCAGTAGTCGCATACA ACTGCGCGGAACCGTGATGGCACGTGGCGCAGGTGTTACTGACTGCACTG TCATCATCTTCTTTCCGAAACTGATCATGTGCACGGTGCTGTGTCGTCCA CCCTGCTGTTGCAGATACTCCACGAGGAGCTCGTCAACTGCAACTTCATC AACCCTCTGCGCCCTGGAGATGTCATGGGCTGCATCTCCTACATTTCGGT ACGCGTGCTTGCAAATGCTGAATGCCATGCCATACCGCATTGCTTGGCTC AAGCTTGGTCGGAGCACTTGAGGCTGTAGCTCAGCAATCACGAAAGAGGG TTTGTCTGCGTCGTTCAGGTGTCTCGTTGCTGCCCCTGCTGCTGAGATGG CATTCCACAGCCCACCATGACAGCTGGAATGCGGTAGCAGCATAATGTTG TGATTGAACGGTTCAGCGCATTTGGAACTTACGGCGAGGCCAGTGTGGCG GTGTAGGACCTCAATTTCGACGAGAAAAAGGGGGGCGGTTTGAAATCGTG TGACATCTACACCATGGTGAAGTCAAATTGCTTGAGGTCGTGTGACATGT ACACTATGGTGAAGCCAAATTGCCTCCCATCATCAAAGTCAGTGTGTTAC CCCAAAGCTAATGCGTGGTTGTGTGTTGTAGGTCTACAAACTGCCTGAAC AGTGTTTTGCCCACAAGAGGTACCGCATGCAGTATTGGTTGCAACACTCA AAGCTGCCCTGTCGTTGTTTCAATTTGCTTGGTTGTGGTGGCGGTCAGGC CGCCGAGACCCATGTGAATGGCGTGTTGGAGAGGCTGACAGTCAAGACAA TTGGGATCAAGGGCATGGACGTGAGGGACTTGAAGGGCCAGCCTCTACCG CTGGCGCTCTTCACAACCCCTAAGCTCAGGACCAAGCGGGTGAGAGCCTG GCATGTGTTCTCAGCATTGGCGCATGCGGTGGTGAAGGCTTGAAGATGAT GCAGCCGATAGTGAAGGGTCGGCGATAATTACGCGGTGACAGAGGACCAG ATGGGGCGGGCAGTGATGTAATGCTTGTGTCAATGCATGTGGCGTCATGA CTCCACAGCTTGTGCATACATTGTGGCAGAAGTACTACAGGTACAGTTGC AGTCGTGAAACGTGTGTGTGCATGGCGCCGCTCTTTTGCAATGATCTCCA TTTCTGCTGCAGCACACCCAAAAAGCTGCAGGCATGCTGCAGAGCATGTG GCCGCAGCACTGCCCAACACAAAACTGTCATGTGCTGCGCTCATTTCTGC GCTCTTCTGCTGTGTATTGTGGCGCGCAGGTGGAGGAGATCTGTGCCAAA GAGTGCCCGGAGCTGAGCAAGCGCATCGTGGTCATATCGGAGCGCACCAT AATGCGCCAGGCGCCCAAGACCGACATGTTCCTGCTGTGAAAAGTGCCAT GTGGCTCGTCTGTGTACATAGCATGCTCTCGCCGCAGGTCACCCGCATAC AGTCTGACCATTTCTCGCTCGGTCCCACAACTACATGCTATCTTTTGTAT TGATGTTAAATATAAGTTGAGGCTGTAGATCAGTCCATGCCGCTGCCGCT GCCGTGGCGTAATGCAAAGAAGCTGGC
back to top

Coding sequence (CDS) from alignment at Contig_27:334675..339701-

>mRNA_6912 ID=mRNA_6912|Name=jgi.p|Trimin1|348564|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=840bp|location=Sequence derived from alignment at Contig_27:334675..339701- (Tribonema minus UTEX_B_3156 )
ATGAGCCATGCGGACGCCGCAGTGGTACAGGTGGCATACCACCACGGACA
GTACCTGTTCCCAGGCTTCGCTGGGGATACTTTCACAAAGACGTTCCGCA
TCAACGGCCTCCGCAGCATCAAGGCAACGAGCGGACAGATGACGGCCTAT
GGTATCATCTGCGAGGTCATCAACCAGCACGGCCGGGTGTGTTTTGTGGC
TGAGAAGACGCTGCTGTTCCCCTGGAAGATTCCTCCATCGGAAGCCACCG
CAGAGCCCCAGCCTCCTAGGCAGCAGACCCTCAAGGAGCACTTCATCAAC
CAGTCAGAAAAGCTGCTGGCACTGGGAGGGACGTCCCTGAGCCGCCTCAG
GGCTGGGCAACTGTCCATGGCGCTGAGCTCGCTGGGCCGGCTGAACCACG
ATCGACACTACAACACCGTCAAGTACAGTGGCGATGAGCTCATGATCCCA
GGTGGGCTGGTGTATGCCCTGTCAACGGCTGCCACCGCACGCGACCTGCA
CGAGATACTCCACGAGGAGCTCGTCAACTGCAACTTCATCAACCCTCTGC
GCCCTGGAGATGTCATGGGCTGCATCTCCTACATTTCGGCCGCCGAGACC
CATGTGAATGGCGTGTTGGAGAGGCTGACAGTCAAGACAATTGGGATCAA
GGGCATGGACGTGAGGGACTTGAAGGGCCAGCCTCTACCGCTGGCGCTCT
TCACAACCCCTAAGCTCAGGACCAAGCGGGTGGAGGAGATCTGTGCCAAA
GAGTGCCCGGAGCTGAGCAAGCGCATCGTGGTCATATCGGAGCGCACCAT
AATGCGCCAGGCGCCCAAGACCGACATGTTCCTGCTGTGA
back to top