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Homology
BLAST of jgi.p|Trimin1|163544 vs. uniprot
Match: A0A835Z1J3_9STRA (Tfp pilus assembly protein PilF n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1J3_9STRA) HSP 1 Score: 158 bits (400), Expect = 3.290e-36 Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1
Query: 2371 ASIIRAKQHMDTDTSVTDCLSVDDIDPDEWEGLEDPAEEEVRFKCFQVHEVNCVFVVLQLCVCTQTHASVACSCCAS 2601
ASIIRAKQHMDTDTSVTDCLSVDDIDPDEWEGLEDPAEEEVRFKCFQVHEVNCVFVVLQLCVCTQTHASVACSCCAS
Sbjct: 791 ASIIRAKQHMDTDTSVTDCLSVDDIDPDEWEGLEDPAEEEVRFKCFQVHEVNCVFVVLQLCVCTQTHASVACSCCAS 867
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| ProteomeId | Trimin1|163544|e_gw1.26.35.1 |
| Hectar predicted targeting category | other localisation |
| TranscriptId | 163866 |
| Track | FilteredModels1 |
| ProteinId | 163544 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_1787 ID=mRNA_1787|Name=jgi.p|Trimin1|163544|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2604bp|location=Sequence derived from alignment at Contig_26:65353..67956- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.
ATGGCGGAGGACGATGGACTCGCGGCTGTTAAGCTGATCAAGCTTGCTCA CGTGCTGCGGAAGCGCGGCAAGTTGGACGAGGCGGAGCAGTCGTTCAGGC GCGCGCTGGCCATCAGAGAGGTGGCCCAGGGGCCCGAGCATGCGTCCACG GCGACAACGCTGCATGAGCTTGCTTTCGTGCTGCGGGAGCGCGGCCAGCT GGAGGAGGCGGAGCAGTTGTTCAGGCGCGCGCTGGCCATCGAGGAGGTGG CTCTGGGGCCCGAGCATGCGTCCACGGCGACAACGCTGCTTGAGCTTGCT TTCGTGCTGCGGGAGCGCGGCCAGCTGGAGGAGGCGGAGCAGTTGTGCAG GCGCGCGCTGGCCATCGAGGAGGTGGCTCTGGGGCCCGAGCATGCGTCCA CGGCGACAACGCTGCATGAGCTTGCTTTCGTGCTGCGGGAGCGCGGCAAG CTGGAGGAGGCGGAGCAGTTGTTCAGGCGCGCGCTGGCCATCGAGGAGGT GGCTCTGGGGCCCGAGCATGCGTCCACGGCGACAACGCTGCATGAGCTTG CTTTCGTGCTGCGGGAGCGCGGCAAGCTGGAGGAGGCGGAGCAATTGTTC AGGCGCGCGCTGGCCATCGACGAGGTGGCTCTGGGGCCCGAGCATGCGTT CACGGCGACAACGCTGCATGAGCTTGCTGTCGTGCTGCGGGAGCGCGGCC AGCTGGAGGAGGCGGAGCAGTTGTGCAGGCGCGCGCTGGCCATCGAGGAG GTGGCTCTGGGGCCCGAGCATGCGTCCACGGCGACAACGCTGCATGAGCT TGCTGTCGTGCTGCGGGAGCGCGGCAAGCTGGAGGAGGCGGAGCAGTTGT TCAGGCGCGTGCTGGCCATTGAGGAGGTGGCTCTGGGGCCCGAGCATGAG TCCACGGCGACAGCGCTGTATGAGCTTGCTCTCGTGGTGCGGGTGCGCGG CCAGCTGGAGGAGGCGGAGCAGTTGTTCAGGCGCGCGCTGGCCATCAGCG AGGTGGCTCTGGGGCCCGAGCATGCGTCCACGGCGACAACGCTGTATGAG CTTGCTGTCGTGCTGCGGGAGCGCGGCCAGCTGGAGGAGGCGGAGCAGTT GTTCAGGCGCGCGCTGGCCATCGAGGAGGTGGCTCTGGGGCCCGAGCATG CGTCCACGGCGACAACGCTGCATGAGCTTGCTCTCGTGCTGTGGGACCGC GGCCAGTTGGAGGCGGCGGAGCAGTTGTTCAGGCGCGCGCTGGCCATCAA AGTGGTGGCCCAAGGGCCCGAGCATGAGTCCACGGCGACAACGCTGTTTG AGCTTGCTGGCTTGCTGCGGGACCGCGGCCAGCTGGACGAGGCGGAGGAG TCGCTCAGGCGCGCGCTGGCCATCAGAGAGGTGGCTCTGGGGCCCGAGCA TGCGTCCACGGCGACAACGCTGCATGCACTTGGGCTCGTGCTGCGGGAGC GCGGCCAGCTGGAGGAGGCGGAGCAGTTGTCCAGGCGCGCGCTGGCCATC GAGGAGGTGGCTCTGGGGCCCGAGCATGCGTTCACGGCGACAACGCTGCA TGCACTTGCCTGCTTGCTGCGGGAGTGCGGCCAGCTGGAGGAGGCGGAGC AGTTGTTGAGGCGCGCGCTGGCCATCAAAGAGGTGGCCCAGGGGCCCGAG CATGCGTCTACGGCGACAACGCTGCATGGACTTGCTCGCGTGCTGCGGGA GCGCGGCCAGCTGGAGGAGGCGGAGCAGTTGTTCAGGCGCGCGCTGGCCA TCAGAGAGGTGGCCCAGGGGCCCGAGCATGCGTCCACGGCGACAACGCAG CATGCACTTGGGCTTGTGCTGCGGGAGCGCGGCAAGCTGGACGAGGCGGA GCAGTTGTTCAAGGGTGCGCTAGCTATCAAAGAGGTCGCCCAGGGGCCGG AGCACGAATCAACAGCGGCGACGCTGTATGCACTTGCTGGCGTGCTGCTA GAGCGTAGCCAGCTGCAGGAGGCGGAGCAGCTCTACAGGCACGTGCTGGC CATCAATGAGGTGGCCCAGGGGCCCGAGCATGCATCAACGGCGTCGACAC TTCATCAGCTTGCGTTTGTTCTCGGGAAGCGCAGTGAGATGGAGCAGGCG GAACAGCTTTACAGGCGCGCATTGGCCATCAAGGAGGTGAAGCAAGGGCC TGAACATCCGTCAACAGCGTCGACGCTTCATCAGCTTGCTGGTGTGCTTC GGAAGCGCAACCAACAGGAAGAGGCGGAGACGCTCTACAGGCGCGCGCTG ACCATCAAGACGATGACGCTTGGCCCTGAGCATCCCCTAACCGCAAACTC GCTCCAAACCCTGGCTGGGCTTCTGAACTCTCAGGGCAAGCAGTCAGAGG CGGAGCCCCTGTTTGAGTCTGCGTCGATCATCAGGGCGAAACAACACATG GACACAGACACGTCCGTGACTGATTGTTTGTCTGTTGACGACATAGATCC GGACGAGTGGGAGGGGTTGGAAGATCCGGCTGAGGAGGAGGTAAGATTCA AATGCTTCCAGGTCCATGAAGTGAATTGTGTTTTCGTGGTGCTGCAGCTG TGCGTATGCACTCAAACTCACGCATCTGTCGCCTGTTCTTGTTGTGCTTC TTGA back to topprotein sequence of jgi.p|Trimin1|163544 >Trimin1|163544|e_gw1.26.35.1 ID=Trimin1|163544|e_gw1.26.35.1|Name=jgi.p|Trimin1|163544|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=868bp
MAEDDGLAAVKLIKLAHVLRKRGKLDEAEQSFRRALAIREVAQGPEHAST ATTLHELAFVLRERGQLEEAEQLFRRALAIEEVALGPEHASTATTLLELA FVLRERGQLEEAEQLCRRALAIEEVALGPEHASTATTLHELAFVLRERGK LEEAEQLFRRALAIEEVALGPEHASTATTLHELAFVLRERGKLEEAEQLF RRALAIDEVALGPEHAFTATTLHELAVVLRERGQLEEAEQLCRRALAIEE VALGPEHASTATTLHELAVVLRERGKLEEAEQLFRRVLAIEEVALGPEHE STATALYELALVVRVRGQLEEAEQLFRRALAISEVALGPEHASTATTLYE LAVVLRERGQLEEAEQLFRRALAIEEVALGPEHASTATTLHELALVLWDR GQLEAAEQLFRRALAIKVVAQGPEHESTATTLFELAGLLRDRGQLDEAEE SLRRALAIREVALGPEHASTATTLHALGLVLRERGQLEEAEQLSRRALAI EEVALGPEHAFTATTLHALACLLRECGQLEEAEQLLRRALAIKEVAQGPE HASTATTLHGLARVLRERGQLEEAEQLFRRALAIREVAQGPEHASTATTQ HALGLVLRERGKLDEAEQLFKGALAIKEVAQGPEHESTAATLYALAGVLL ERSQLQEAEQLYRHVLAINEVAQGPEHASTASTLHQLAFVLGKRSEMEQA EQLYRRALAIKEVKQGPEHPSTASTLHQLAGVLRKRNQQEEAETLYRRAL TIKTMTLGPEHPLTANSLQTLAGLLNSQGKQSEAEPLFESASIIRAKQHM DTDTSVTDCLSVDDIDPDEWEGLEDPAEEEVRFKCFQVHEVNCVFVVLQL CVCTQTHASVACSCCAS* back to topmRNA from alignment at Contig_26:65353..67956- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1787 ID=mRNA_1787|Name=jgi.p|Trimin1|163544|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2604bp|location=Sequence derived from alignment at Contig_26:65353..67956- (Tribonema minus UTEX_B_3156 ) ATGGCGGAGGACGATGGACTCGCGGCTGTTAAGCTGATCAAGCTTGCTCA
CGTGCTGCGGAAGCGCGGCAAGTTGGACGAGGCGGAGCAGTCGTTCAGGC
GCGCGCTGGCCATCAGAGAGGTGGCCCAGGGGCCCGAGCATGCGTCCACG
GCGACAACGCTGCATGAGCTTGCTTTCGTGCTGCGGGAGCGCGGCCAGCT
GGAGGAGGCGGAGCAGTTGTTCAGGCGCGCGCTGGCCATCGAGGAGGTGG
CTCTGGGGCCCGAGCATGCGTCCACGGCGACAACGCTGCTTGAGCTTGCT
TTCGTGCTGCGGGAGCGCGGCCAGCTGGAGGAGGCGGAGCAGTTGTGCAG
GCGCGCGCTGGCCATCGAGGAGGTGGCTCTGGGGCCCGAGCATGCGTCCA
CGGCGACAACGCTGCATGAGCTTGCTTTCGTGCTGCGGGAGCGCGGCAAG
CTGGAGGAGGCGGAGCAGTTGTTCAGGCGCGCGCTGGCCATCGAGGAGGT
GGCTCTGGGGCCCGAGCATGCGTCCACGGCGACAACGCTGCATGAGCTTG
CTTTCGTGCTGCGGGAGCGCGGCAAGCTGGAGGAGGCGGAGCAATTGTTC
AGGCGCGCGCTGGCCATCGACGAGGTGGCTCTGGGGCCCGAGCATGCGTT
CACGGCGACAACGCTGCATGAGCTTGCTGTCGTGCTGCGGGAGCGCGGCC
AGCTGGAGGAGGCGGAGCAGTTGTGCAGGCGCGCGCTGGCCATCGAGGAG
GTGGCTCTGGGGCCCGAGCATGCGTCCACGGCGACAACGCTGCATGAGCT
TGCTGTCGTGCTGCGGGAGCGCGGCAAGCTGGAGGAGGCGGAGCAGTTGT
TCAGGCGCGTGCTGGCCATTGAGGAGGTGGCTCTGGGGCCCGAGCATGAG
TCCACGGCGACAGCGCTGTATGAGCTTGCTCTCGTGGTGCGGGTGCGCGG
CCAGCTGGAGGAGGCGGAGCAGTTGTTCAGGCGCGCGCTGGCCATCAGCG
AGGTGGCTCTGGGGCCCGAGCATGCGTCCACGGCGACAACGCTGTATGAG
CTTGCTGTCGTGCTGCGGGAGCGCGGCCAGCTGGAGGAGGCGGAGCAGTT
GTTCAGGCGCGCGCTGGCCATCGAGGAGGTGGCTCTGGGGCCCGAGCATG
CGTCCACGGCGACAACGCTGCATGAGCTTGCTCTCGTGCTGTGGGACCGC
GGCCAGTTGGAGGCGGCGGAGCAGTTGTTCAGGCGCGCGCTGGCCATCAA
AGTGGTGGCCCAAGGGCCCGAGCATGAGTCCACGGCGACAACGCTGTTTG
AGCTTGCTGGCTTGCTGCGGGACCGCGGCCAGCTGGACGAGGCGGAGGAG
TCGCTCAGGCGCGCGCTGGCCATCAGAGAGGTGGCTCTGGGGCCCGAGCA
TGCGTCCACGGCGACAACGCTGCATGCACTTGGGCTCGTGCTGCGGGAGC
GCGGCCAGCTGGAGGAGGCGGAGCAGTTGTCCAGGCGCGCGCTGGCCATC
GAGGAGGTGGCTCTGGGGCCCGAGCATGCGTTCACGGCGACAACGCTGCA
TGCACTTGCCTGCTTGCTGCGGGAGTGCGGCCAGCTGGAGGAGGCGGAGC
AGTTGTTGAGGCGCGCGCTGGCCATCAAAGAGGTGGCCCAGGGGCCCGAG
CATGCGTCTACGGCGACAACGCTGCATGGACTTGCTCGCGTGCTGCGGGA
GCGCGGCCAGCTGGAGGAGGCGGAGCAGTTGTTCAGGCGCGCGCTGGCCA
TCAGAGAGGTGGCCCAGGGGCCCGAGCATGCGTCCACGGCGACAACGCAG
CATGCACTTGGGCTTGTGCTGCGGGAGCGCGGCAAGCTGGACGAGGCGGA
GCAGTTGTTCAAGGGTGCGCTAGCTATCAAAGAGGTCGCCCAGGGGCCGG
AGCACGAATCAACAGCGGCGACGCTGTATGCACTTGCTGGCGTGCTGCTA
GAGCGTAGCCAGCTGCAGGAGGCGGAGCAGCTCTACAGGCACGTGCTGGC
CATCAATGAGGTGGCCCAGGGGCCCGAGCATGCATCAACGGCGTCGACAC
TTCATCAGCTTGCGTTTGTTCTCGGGAAGCGCAGTGAGATGGAGCAGGCG
GAACAGCTTTACAGGCGCGCATTGGCCATCAAGGAGGTGAAGCAAGGGCC
TGAACATCCGTCAACAGCGTCGACGCTTCATCAGCTTGCTGGTGTGCTTC
GGAAGCGCAACCAACAGGAAGAGGCGGAGACGCTCTACAGGCGCGCGCTG
ACCATCAAGACGATGACGCTTGGCCCTGAGCATCCCCTAACCGCAAACTC
GCTCCAAACCCTGGCTGGGCTTCTGAACTCTCAGGGCAAGCAGTCAGAGG
CGGAGCCCCTGTTTGAGTCTGCGTCGATCATCAGGGCGAAACAACACATG
GACACAGACACGTCCGTGACTGATTGTTTGTCTGTTGACGACATAGATCC
GGACGAGTGGGAGGGGTTGGAAGATCCGGCTGAGGAGGAGGTAAGATTCA
AATGCTTCCAGGTCCATGAAGTGAATTGTGTTTTCGTGGTGCTGCAGCTG
TGCGTATGCACTCAAACTCACGCATCTGTCGCCTGTTCTTGTTGTGCTTC
TTGA back to topCoding sequence (CDS) from alignment at Contig_26:65353..67956- >mRNA_1787 ID=mRNA_1787|Name=jgi.p|Trimin1|163544|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=2604bp|location=Sequence derived from alignment at Contig_26:65353..67956- (Tribonema minus UTEX_B_3156 ) ATGGCGGAGGACGATGGACTCGCGGCTGTTAAGCTGATCAAGCTTGCTCA CGTGCTGCGGAAGCGCGGCAAGTTGGACGAGGCGGAGCAGTCGTTCAGGC GCGCGCTGGCCATCAGAGAGGTGGCCCAGGGGCCCGAGCATGCGTCCACG GCGACAACGCTGCATGAGCTTGCTTTCGTGCTGCGGGAGCGCGGCCAGCT GGAGGAGGCGGAGCAGTTGTTCAGGCGCGCGCTGGCCATCGAGGAGGTGG CTCTGGGGCCCGAGCATGCGTCCACGGCGACAACGCTGCTTGAGCTTGCT TTCGTGCTGCGGGAGCGCGGCCAGCTGGAGGAGGCGGAGCAGTTGTGCAG GCGCGCGCTGGCCATCGAGGAGGTGGCTCTGGGGCCCGAGCATGCGTCCA CGGCGACAACGCTGCATGAGCTTGCTTTCGTGCTGCGGGAGCGCGGCAAG CTGGAGGAGGCGGAGCAGTTGTTCAGGCGCGCGCTGGCCATCGAGGAGGT GGCTCTGGGGCCCGAGCATGCGTCCACGGCGACAACGCTGCATGAGCTTG CTTTCGTGCTGCGGGAGCGCGGCAAGCTGGAGGAGGCGGAGCAATTGTTC AGGCGCGCGCTGGCCATCGACGAGGTGGCTCTGGGGCCCGAGCATGCGTT CACGGCGACAACGCTGCATGAGCTTGCTGTCGTGCTGCGGGAGCGCGGCC AGCTGGAGGAGGCGGAGCAGTTGTGCAGGCGCGCGCTGGCCATCGAGGAG GTGGCTCTGGGGCCCGAGCATGCGTCCACGGCGACAACGCTGCATGAGCT TGCTGTCGTGCTGCGGGAGCGCGGCAAGCTGGAGGAGGCGGAGCAGTTGT TCAGGCGCGTGCTGGCCATTGAGGAGGTGGCTCTGGGGCCCGAGCATGAG TCCACGGCGACAGCGCTGTATGAGCTTGCTCTCGTGGTGCGGGTGCGCGG CCAGCTGGAGGAGGCGGAGCAGTTGTTCAGGCGCGCGCTGGCCATCAGCG AGGTGGCTCTGGGGCCCGAGCATGCGTCCACGGCGACAACGCTGTATGAG CTTGCTGTCGTGCTGCGGGAGCGCGGCCAGCTGGAGGAGGCGGAGCAGTT GTTCAGGCGCGCGCTGGCCATCGAGGAGGTGGCTCTGGGGCCCGAGCATG CGTCCACGGCGACAACGCTGCATGAGCTTGCTCTCGTGCTGTGGGACCGC GGCCAGTTGGAGGCGGCGGAGCAGTTGTTCAGGCGCGCGCTGGCCATCAA AGTGGTGGCCCAAGGGCCCGAGCATGAGTCCACGGCGACAACGCTGTTTG AGCTTGCTGGCTTGCTGCGGGACCGCGGCCAGCTGGACGAGGCGGAGGAG TCGCTCAGGCGCGCGCTGGCCATCAGAGAGGTGGCTCTGGGGCCCGAGCA TGCGTCCACGGCGACAACGCTGCATGCACTTGGGCTCGTGCTGCGGGAGC GCGGCCAGCTGGAGGAGGCGGAGCAGTTGTCCAGGCGCGCGCTGGCCATC GAGGAGGTGGCTCTGGGGCCCGAGCATGCGTTCACGGCGACAACGCTGCA TGCACTTGCCTGCTTGCTGCGGGAGTGCGGCCAGCTGGAGGAGGCGGAGC AGTTGTTGAGGCGCGCGCTGGCCATCAAAGAGGTGGCCCAGGGGCCCGAG CATGCGTCTACGGCGACAACGCTGCATGGACTTGCTCGCGTGCTGCGGGA GCGCGGCCAGCTGGAGGAGGCGGAGCAGTTGTTCAGGCGCGCGCTGGCCA TCAGAGAGGTGGCCCAGGGGCCCGAGCATGCGTCCACGGCGACAACGCAG CATGCACTTGGGCTTGTGCTGCGGGAGCGCGGCAAGCTGGACGAGGCGGA GCAGTTGTTCAAGGGTGCGCTAGCTATCAAAGAGGTCGCCCAGGGGCCGG AGCACGAATCAACAGCGGCGACGCTGTATGCACTTGCTGGCGTGCTGCTA GAGCGTAGCCAGCTGCAGGAGGCGGAGCAGCTCTACAGGCACGTGCTGGC CATCAATGAGGTGGCCCAGGGGCCCGAGCATGCATCAACGGCGTCGACAC TTCATCAGCTTGCGTTTGTTCTCGGGAAGCGCAGTGAGATGGAGCAGGCG GAACAGCTTTACAGGCGCGCATTGGCCATCAAGGAGGTGAAGCAAGGGCC TGAACATCCGTCAACAGCGTCGACGCTTCATCAGCTTGCTGGTGTGCTTC GGAAGCGCAACCAACAGGAAGAGGCGGAGACGCTCTACAGGCGCGCGCTG ACCATCAAGACGATGACGCTTGGCCCTGAGCATCCCCTAACCGCAAACTC GCTCCAAACCCTGGCTGGGCTTCTGAACTCTCAGGGCAAGCAGTCAGAGG CGGAGCCCCTGTTTGAGTCTGCGTCGATCATCAGGGCGAAACAACACATG GACACAGACACGTCCGTGACTGATTGTTTGTCTGTTGACGACATAGATCC GGACGAGTGGGAGGGGTTGGAAGATCCGGCTGAGGAGGAGGTAAGATTCA AATGCTTCCAGGTCCATGAAGTGAATTGTGTTTTCGTGGTGCTGCAGCTG TGCGTATGCACTCAAACTCACGCATCTGTCGCCTGTTCTTGTTGTGCTTC TTGA back to top
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