mRNA_1787 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|163544
Unique NamemRNA_1787
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|163544 vs. uniprot
Match: A0A835Z1J3_9STRA (Tfp pilus assembly protein PilF n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1J3_9STRA)

HSP 1 Score: 158 bits (400), Expect = 3.290e-36
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1
Query: 2371 ASIIRAKQHMDTDTSVTDCLSVDDIDPDEWEGLEDPAEEEVRFKCFQVHEVNCVFVVLQLCVCTQTHASVACSCCAS 2601
            ASIIRAKQHMDTDTSVTDCLSVDDIDPDEWEGLEDPAEEEVRFKCFQVHEVNCVFVVLQLCVCTQTHASVACSCCAS
Sbjct:  791 ASIIRAKQHMDTDTSVTDCLSVDDIDPDEWEGLEDPAEEEVRFKCFQVHEVNCVFVVLQLCVCTQTHASVACSCCAS 867          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163544 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z1J3_9STRA3.290e-36100.00Tfp pilus assembly protein PilF n=1 Tax=Tribonema ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_26contigContig_26:65353..67956 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|163544|e_gw1.26.35.1
Hectar predicted targeting categoryother localisation
TranscriptId163866
TrackFilteredModels1
ProteinId163544
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163544gene_1787Tribonema minus UTEX_B_3156 geneContig_26 65353..67956 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1787_1exon_1787_1Tribonema minus UTEX_B_3156 exonContig_26 65353..67956 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1787CDS_1787Tribonema minus UTEX_B_3156 CDSContig_26 65353..67956 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163544Trimin1|163544|e_gw1.26.35.1Tribonema minus UTEX_B_3156 polypeptideContig_26 65353..67956 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1787 ID=mRNA_1787|Name=jgi.p|Trimin1|163544|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2604bp|location=Sequence derived from alignment at Contig_26:65353..67956- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGAGGACGATGGACTCGCGGCTGTTAAGCTGATCAAGCTTGCTCA
CGTGCTGCGGAAGCGCGGCAAGTTGGACGAGGCGGAGCAGTCGTTCAGGC
GCGCGCTGGCCATCAGAGAGGTGGCCCAGGGGCCCGAGCATGCGTCCACG
GCGACAACGCTGCATGAGCTTGCTTTCGTGCTGCGGGAGCGCGGCCAGCT
GGAGGAGGCGGAGCAGTTGTTCAGGCGCGCGCTGGCCATCGAGGAGGTGG
CTCTGGGGCCCGAGCATGCGTCCACGGCGACAACGCTGCTTGAGCTTGCT
TTCGTGCTGCGGGAGCGCGGCCAGCTGGAGGAGGCGGAGCAGTTGTGCAG
GCGCGCGCTGGCCATCGAGGAGGTGGCTCTGGGGCCCGAGCATGCGTCCA
CGGCGACAACGCTGCATGAGCTTGCTTTCGTGCTGCGGGAGCGCGGCAAG
CTGGAGGAGGCGGAGCAGTTGTTCAGGCGCGCGCTGGCCATCGAGGAGGT
GGCTCTGGGGCCCGAGCATGCGTCCACGGCGACAACGCTGCATGAGCTTG
CTTTCGTGCTGCGGGAGCGCGGCAAGCTGGAGGAGGCGGAGCAATTGTTC
AGGCGCGCGCTGGCCATCGACGAGGTGGCTCTGGGGCCCGAGCATGCGTT
CACGGCGACAACGCTGCATGAGCTTGCTGTCGTGCTGCGGGAGCGCGGCC
AGCTGGAGGAGGCGGAGCAGTTGTGCAGGCGCGCGCTGGCCATCGAGGAG
GTGGCTCTGGGGCCCGAGCATGCGTCCACGGCGACAACGCTGCATGAGCT
TGCTGTCGTGCTGCGGGAGCGCGGCAAGCTGGAGGAGGCGGAGCAGTTGT
TCAGGCGCGTGCTGGCCATTGAGGAGGTGGCTCTGGGGCCCGAGCATGAG
TCCACGGCGACAGCGCTGTATGAGCTTGCTCTCGTGGTGCGGGTGCGCGG
CCAGCTGGAGGAGGCGGAGCAGTTGTTCAGGCGCGCGCTGGCCATCAGCG
AGGTGGCTCTGGGGCCCGAGCATGCGTCCACGGCGACAACGCTGTATGAG
CTTGCTGTCGTGCTGCGGGAGCGCGGCCAGCTGGAGGAGGCGGAGCAGTT
GTTCAGGCGCGCGCTGGCCATCGAGGAGGTGGCTCTGGGGCCCGAGCATG
CGTCCACGGCGACAACGCTGCATGAGCTTGCTCTCGTGCTGTGGGACCGC
GGCCAGTTGGAGGCGGCGGAGCAGTTGTTCAGGCGCGCGCTGGCCATCAA
AGTGGTGGCCCAAGGGCCCGAGCATGAGTCCACGGCGACAACGCTGTTTG
AGCTTGCTGGCTTGCTGCGGGACCGCGGCCAGCTGGACGAGGCGGAGGAG
TCGCTCAGGCGCGCGCTGGCCATCAGAGAGGTGGCTCTGGGGCCCGAGCA
TGCGTCCACGGCGACAACGCTGCATGCACTTGGGCTCGTGCTGCGGGAGC
GCGGCCAGCTGGAGGAGGCGGAGCAGTTGTCCAGGCGCGCGCTGGCCATC
GAGGAGGTGGCTCTGGGGCCCGAGCATGCGTTCACGGCGACAACGCTGCA
TGCACTTGCCTGCTTGCTGCGGGAGTGCGGCCAGCTGGAGGAGGCGGAGC
AGTTGTTGAGGCGCGCGCTGGCCATCAAAGAGGTGGCCCAGGGGCCCGAG
CATGCGTCTACGGCGACAACGCTGCATGGACTTGCTCGCGTGCTGCGGGA
GCGCGGCCAGCTGGAGGAGGCGGAGCAGTTGTTCAGGCGCGCGCTGGCCA
TCAGAGAGGTGGCCCAGGGGCCCGAGCATGCGTCCACGGCGACAACGCAG
CATGCACTTGGGCTTGTGCTGCGGGAGCGCGGCAAGCTGGACGAGGCGGA
GCAGTTGTTCAAGGGTGCGCTAGCTATCAAAGAGGTCGCCCAGGGGCCGG
AGCACGAATCAACAGCGGCGACGCTGTATGCACTTGCTGGCGTGCTGCTA
GAGCGTAGCCAGCTGCAGGAGGCGGAGCAGCTCTACAGGCACGTGCTGGC
CATCAATGAGGTGGCCCAGGGGCCCGAGCATGCATCAACGGCGTCGACAC
TTCATCAGCTTGCGTTTGTTCTCGGGAAGCGCAGTGAGATGGAGCAGGCG
GAACAGCTTTACAGGCGCGCATTGGCCATCAAGGAGGTGAAGCAAGGGCC
TGAACATCCGTCAACAGCGTCGACGCTTCATCAGCTTGCTGGTGTGCTTC
GGAAGCGCAACCAACAGGAAGAGGCGGAGACGCTCTACAGGCGCGCGCTG
ACCATCAAGACGATGACGCTTGGCCCTGAGCATCCCCTAACCGCAAACTC
GCTCCAAACCCTGGCTGGGCTTCTGAACTCTCAGGGCAAGCAGTCAGAGG
CGGAGCCCCTGTTTGAGTCTGCGTCGATCATCAGGGCGAAACAACACATG
GACACAGACACGTCCGTGACTGATTGTTTGTCTGTTGACGACATAGATCC
GGACGAGTGGGAGGGGTTGGAAGATCCGGCTGAGGAGGAGGTAAGATTCA
AATGCTTCCAGGTCCATGAAGTGAATTGTGTTTTCGTGGTGCTGCAGCTG
TGCGTATGCACTCAAACTCACGCATCTGTCGCCTGTTCTTGTTGTGCTTC
TTGA
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protein sequence of jgi.p|Trimin1|163544

>Trimin1|163544|e_gw1.26.35.1 ID=Trimin1|163544|e_gw1.26.35.1|Name=jgi.p|Trimin1|163544|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=868bp
MAEDDGLAAVKLIKLAHVLRKRGKLDEAEQSFRRALAIREVAQGPEHAST
ATTLHELAFVLRERGQLEEAEQLFRRALAIEEVALGPEHASTATTLLELA
FVLRERGQLEEAEQLCRRALAIEEVALGPEHASTATTLHELAFVLRERGK
LEEAEQLFRRALAIEEVALGPEHASTATTLHELAFVLRERGKLEEAEQLF
RRALAIDEVALGPEHAFTATTLHELAVVLRERGQLEEAEQLCRRALAIEE
VALGPEHASTATTLHELAVVLRERGKLEEAEQLFRRVLAIEEVALGPEHE
STATALYELALVVRVRGQLEEAEQLFRRALAISEVALGPEHASTATTLYE
LAVVLRERGQLEEAEQLFRRALAIEEVALGPEHASTATTLHELALVLWDR
GQLEAAEQLFRRALAIKVVAQGPEHESTATTLFELAGLLRDRGQLDEAEE
SLRRALAIREVALGPEHASTATTLHALGLVLRERGQLEEAEQLSRRALAI
EEVALGPEHAFTATTLHALACLLRECGQLEEAEQLLRRALAIKEVAQGPE
HASTATTLHGLARVLRERGQLEEAEQLFRRALAIREVAQGPEHASTATTQ
HALGLVLRERGKLDEAEQLFKGALAIKEVAQGPEHESTAATLYALAGVLL
ERSQLQEAEQLYRHVLAINEVAQGPEHASTASTLHQLAFVLGKRSEMEQA
EQLYRRALAIKEVKQGPEHPSTASTLHQLAGVLRKRNQQEEAETLYRRAL
TIKTMTLGPEHPLTANSLQTLAGLLNSQGKQSEAEPLFESASIIRAKQHM
DTDTSVTDCLSVDDIDPDEWEGLEDPAEEEVRFKCFQVHEVNCVFVVLQL
CVCTQTHASVACSCCAS*
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mRNA from alignment at Contig_26:65353..67956-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1787 ID=mRNA_1787|Name=jgi.p|Trimin1|163544|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2604bp|location=Sequence derived from alignment at Contig_26:65353..67956- (Tribonema minus UTEX_B_3156 )
ATGGCGGAGGACGATGGACTCGCGGCTGTTAAGCTGATCAAGCTTGCTCA CGTGCTGCGGAAGCGCGGCAAGTTGGACGAGGCGGAGCAGTCGTTCAGGC GCGCGCTGGCCATCAGAGAGGTGGCCCAGGGGCCCGAGCATGCGTCCACG GCGACAACGCTGCATGAGCTTGCTTTCGTGCTGCGGGAGCGCGGCCAGCT GGAGGAGGCGGAGCAGTTGTTCAGGCGCGCGCTGGCCATCGAGGAGGTGG CTCTGGGGCCCGAGCATGCGTCCACGGCGACAACGCTGCTTGAGCTTGCT TTCGTGCTGCGGGAGCGCGGCCAGCTGGAGGAGGCGGAGCAGTTGTGCAG GCGCGCGCTGGCCATCGAGGAGGTGGCTCTGGGGCCCGAGCATGCGTCCA CGGCGACAACGCTGCATGAGCTTGCTTTCGTGCTGCGGGAGCGCGGCAAG CTGGAGGAGGCGGAGCAGTTGTTCAGGCGCGCGCTGGCCATCGAGGAGGT GGCTCTGGGGCCCGAGCATGCGTCCACGGCGACAACGCTGCATGAGCTTG CTTTCGTGCTGCGGGAGCGCGGCAAGCTGGAGGAGGCGGAGCAATTGTTC AGGCGCGCGCTGGCCATCGACGAGGTGGCTCTGGGGCCCGAGCATGCGTT CACGGCGACAACGCTGCATGAGCTTGCTGTCGTGCTGCGGGAGCGCGGCC AGCTGGAGGAGGCGGAGCAGTTGTGCAGGCGCGCGCTGGCCATCGAGGAG GTGGCTCTGGGGCCCGAGCATGCGTCCACGGCGACAACGCTGCATGAGCT TGCTGTCGTGCTGCGGGAGCGCGGCAAGCTGGAGGAGGCGGAGCAGTTGT TCAGGCGCGTGCTGGCCATTGAGGAGGTGGCTCTGGGGCCCGAGCATGAG TCCACGGCGACAGCGCTGTATGAGCTTGCTCTCGTGGTGCGGGTGCGCGG CCAGCTGGAGGAGGCGGAGCAGTTGTTCAGGCGCGCGCTGGCCATCAGCG AGGTGGCTCTGGGGCCCGAGCATGCGTCCACGGCGACAACGCTGTATGAG CTTGCTGTCGTGCTGCGGGAGCGCGGCCAGCTGGAGGAGGCGGAGCAGTT GTTCAGGCGCGCGCTGGCCATCGAGGAGGTGGCTCTGGGGCCCGAGCATG CGTCCACGGCGACAACGCTGCATGAGCTTGCTCTCGTGCTGTGGGACCGC GGCCAGTTGGAGGCGGCGGAGCAGTTGTTCAGGCGCGCGCTGGCCATCAA AGTGGTGGCCCAAGGGCCCGAGCATGAGTCCACGGCGACAACGCTGTTTG AGCTTGCTGGCTTGCTGCGGGACCGCGGCCAGCTGGACGAGGCGGAGGAG TCGCTCAGGCGCGCGCTGGCCATCAGAGAGGTGGCTCTGGGGCCCGAGCA TGCGTCCACGGCGACAACGCTGCATGCACTTGGGCTCGTGCTGCGGGAGC GCGGCCAGCTGGAGGAGGCGGAGCAGTTGTCCAGGCGCGCGCTGGCCATC GAGGAGGTGGCTCTGGGGCCCGAGCATGCGTTCACGGCGACAACGCTGCA TGCACTTGCCTGCTTGCTGCGGGAGTGCGGCCAGCTGGAGGAGGCGGAGC AGTTGTTGAGGCGCGCGCTGGCCATCAAAGAGGTGGCCCAGGGGCCCGAG CATGCGTCTACGGCGACAACGCTGCATGGACTTGCTCGCGTGCTGCGGGA GCGCGGCCAGCTGGAGGAGGCGGAGCAGTTGTTCAGGCGCGCGCTGGCCA TCAGAGAGGTGGCCCAGGGGCCCGAGCATGCGTCCACGGCGACAACGCAG CATGCACTTGGGCTTGTGCTGCGGGAGCGCGGCAAGCTGGACGAGGCGGA GCAGTTGTTCAAGGGTGCGCTAGCTATCAAAGAGGTCGCCCAGGGGCCGG AGCACGAATCAACAGCGGCGACGCTGTATGCACTTGCTGGCGTGCTGCTA GAGCGTAGCCAGCTGCAGGAGGCGGAGCAGCTCTACAGGCACGTGCTGGC CATCAATGAGGTGGCCCAGGGGCCCGAGCATGCATCAACGGCGTCGACAC TTCATCAGCTTGCGTTTGTTCTCGGGAAGCGCAGTGAGATGGAGCAGGCG GAACAGCTTTACAGGCGCGCATTGGCCATCAAGGAGGTGAAGCAAGGGCC TGAACATCCGTCAACAGCGTCGACGCTTCATCAGCTTGCTGGTGTGCTTC GGAAGCGCAACCAACAGGAAGAGGCGGAGACGCTCTACAGGCGCGCGCTG ACCATCAAGACGATGACGCTTGGCCCTGAGCATCCCCTAACCGCAAACTC GCTCCAAACCCTGGCTGGGCTTCTGAACTCTCAGGGCAAGCAGTCAGAGG CGGAGCCCCTGTTTGAGTCTGCGTCGATCATCAGGGCGAAACAACACATG GACACAGACACGTCCGTGACTGATTGTTTGTCTGTTGACGACATAGATCC GGACGAGTGGGAGGGGTTGGAAGATCCGGCTGAGGAGGAGGTAAGATTCA AATGCTTCCAGGTCCATGAAGTGAATTGTGTTTTCGTGGTGCTGCAGCTG TGCGTATGCACTCAAACTCACGCATCTGTCGCCTGTTCTTGTTGTGCTTC TTGA
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Coding sequence (CDS) from alignment at Contig_26:65353..67956-

>mRNA_1787 ID=mRNA_1787|Name=jgi.p|Trimin1|163544|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=2604bp|location=Sequence derived from alignment at Contig_26:65353..67956- (Tribonema minus UTEX_B_3156 )
ATGGCGGAGGACGATGGACTCGCGGCTGTTAAGCTGATCAAGCTTGCTCA
CGTGCTGCGGAAGCGCGGCAAGTTGGACGAGGCGGAGCAGTCGTTCAGGC
GCGCGCTGGCCATCAGAGAGGTGGCCCAGGGGCCCGAGCATGCGTCCACG
GCGACAACGCTGCATGAGCTTGCTTTCGTGCTGCGGGAGCGCGGCCAGCT
GGAGGAGGCGGAGCAGTTGTTCAGGCGCGCGCTGGCCATCGAGGAGGTGG
CTCTGGGGCCCGAGCATGCGTCCACGGCGACAACGCTGCTTGAGCTTGCT
TTCGTGCTGCGGGAGCGCGGCCAGCTGGAGGAGGCGGAGCAGTTGTGCAG
GCGCGCGCTGGCCATCGAGGAGGTGGCTCTGGGGCCCGAGCATGCGTCCA
CGGCGACAACGCTGCATGAGCTTGCTTTCGTGCTGCGGGAGCGCGGCAAG
CTGGAGGAGGCGGAGCAGTTGTTCAGGCGCGCGCTGGCCATCGAGGAGGT
GGCTCTGGGGCCCGAGCATGCGTCCACGGCGACAACGCTGCATGAGCTTG
CTTTCGTGCTGCGGGAGCGCGGCAAGCTGGAGGAGGCGGAGCAATTGTTC
AGGCGCGCGCTGGCCATCGACGAGGTGGCTCTGGGGCCCGAGCATGCGTT
CACGGCGACAACGCTGCATGAGCTTGCTGTCGTGCTGCGGGAGCGCGGCC
AGCTGGAGGAGGCGGAGCAGTTGTGCAGGCGCGCGCTGGCCATCGAGGAG
GTGGCTCTGGGGCCCGAGCATGCGTCCACGGCGACAACGCTGCATGAGCT
TGCTGTCGTGCTGCGGGAGCGCGGCAAGCTGGAGGAGGCGGAGCAGTTGT
TCAGGCGCGTGCTGGCCATTGAGGAGGTGGCTCTGGGGCCCGAGCATGAG
TCCACGGCGACAGCGCTGTATGAGCTTGCTCTCGTGGTGCGGGTGCGCGG
CCAGCTGGAGGAGGCGGAGCAGTTGTTCAGGCGCGCGCTGGCCATCAGCG
AGGTGGCTCTGGGGCCCGAGCATGCGTCCACGGCGACAACGCTGTATGAG
CTTGCTGTCGTGCTGCGGGAGCGCGGCCAGCTGGAGGAGGCGGAGCAGTT
GTTCAGGCGCGCGCTGGCCATCGAGGAGGTGGCTCTGGGGCCCGAGCATG
CGTCCACGGCGACAACGCTGCATGAGCTTGCTCTCGTGCTGTGGGACCGC
GGCCAGTTGGAGGCGGCGGAGCAGTTGTTCAGGCGCGCGCTGGCCATCAA
AGTGGTGGCCCAAGGGCCCGAGCATGAGTCCACGGCGACAACGCTGTTTG
AGCTTGCTGGCTTGCTGCGGGACCGCGGCCAGCTGGACGAGGCGGAGGAG
TCGCTCAGGCGCGCGCTGGCCATCAGAGAGGTGGCTCTGGGGCCCGAGCA
TGCGTCCACGGCGACAACGCTGCATGCACTTGGGCTCGTGCTGCGGGAGC
GCGGCCAGCTGGAGGAGGCGGAGCAGTTGTCCAGGCGCGCGCTGGCCATC
GAGGAGGTGGCTCTGGGGCCCGAGCATGCGTTCACGGCGACAACGCTGCA
TGCACTTGCCTGCTTGCTGCGGGAGTGCGGCCAGCTGGAGGAGGCGGAGC
AGTTGTTGAGGCGCGCGCTGGCCATCAAAGAGGTGGCCCAGGGGCCCGAG
CATGCGTCTACGGCGACAACGCTGCATGGACTTGCTCGCGTGCTGCGGGA
GCGCGGCCAGCTGGAGGAGGCGGAGCAGTTGTTCAGGCGCGCGCTGGCCA
TCAGAGAGGTGGCCCAGGGGCCCGAGCATGCGTCCACGGCGACAACGCAG
CATGCACTTGGGCTTGTGCTGCGGGAGCGCGGCAAGCTGGACGAGGCGGA
GCAGTTGTTCAAGGGTGCGCTAGCTATCAAAGAGGTCGCCCAGGGGCCGG
AGCACGAATCAACAGCGGCGACGCTGTATGCACTTGCTGGCGTGCTGCTA
GAGCGTAGCCAGCTGCAGGAGGCGGAGCAGCTCTACAGGCACGTGCTGGC
CATCAATGAGGTGGCCCAGGGGCCCGAGCATGCATCAACGGCGTCGACAC
TTCATCAGCTTGCGTTTGTTCTCGGGAAGCGCAGTGAGATGGAGCAGGCG
GAACAGCTTTACAGGCGCGCATTGGCCATCAAGGAGGTGAAGCAAGGGCC
TGAACATCCGTCAACAGCGTCGACGCTTCATCAGCTTGCTGGTGTGCTTC
GGAAGCGCAACCAACAGGAAGAGGCGGAGACGCTCTACAGGCGCGCGCTG
ACCATCAAGACGATGACGCTTGGCCCTGAGCATCCCCTAACCGCAAACTC
GCTCCAAACCCTGGCTGGGCTTCTGAACTCTCAGGGCAAGCAGTCAGAGG
CGGAGCCCCTGTTTGAGTCTGCGTCGATCATCAGGGCGAAACAACACATG
GACACAGACACGTCCGTGACTGATTGTTTGTCTGTTGACGACATAGATCC
GGACGAGTGGGAGGGGTTGGAAGATCCGGCTGAGGAGGAGGTAAGATTCA
AATGCTTCCAGGTCCATGAAGTGAATTGTGTTTTCGTGGTGCTGCAGCTG
TGCGTATGCACTCAAACTCACGCATCTGTCGCCTGTTCTTGTTGTGCTTC
TTGA
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