mRNA_18570 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|136059 vs. uniprot
Match: A0A836CG22_9STRA (Glyco_hydro_cc domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG22_9STRA) HSP 1 Score: 509 bits (1310), Expect = 1.360e-182 Identity = 245/245 (100.00%), Postives = 245/245 (100.00%), Query Frame = 1 Query: 1 TCTKSKKRGVSIDPRISGAYSAREVGLLAKGARWYNNWNVTSNDPTAFRRLAFMPMVWSRYGADHWMQAIKQTPLKGGAGSIILGFNEPNSHSQSNMTPQLAAAEWGAVLARAKQLRFKLASPSPTKKGYPAALLSGIEWLQQFFAEADRAYGTTNAGVHYINMHTYDCDVASVSDRIDCLSTAFDGLPIIVSEVGCAAAKLAGNATMMMDFMQQVVPMLEAHPRVAYYSWFNGLDKYAALPASS 735 TCTKSKKRGVSIDPRISGAYSAREVGLLAKGARWYNNWNVTSNDPTAFRRLAFMPMVWSRYGADHWMQAIKQTPLKGGAGSIILGFNEPNSHSQSNMTPQLAAAEWGAVLARAKQLRFKLASPSPTKKGYPAALLSGIEWLQQFFAEADRAYGTTNAGVHYINMHTYDCDVASVSDRIDCLSTAFDGLPIIVSEVGCAAAKLAGNATMMMDFMQQVVPMLEAHPRVAYYSWFNGLDKYAALPASS Sbjct: 1 TCTKSKKRGVSIDPRISGAYSAREVGLLAKGARWYNNWNVTSNDPTAFRRLAFMPMVWSRYGADHWMQAIKQTPLKGGAGSIILGFNEPNSHSQSNMTPQLAAAEWGAVLARAKQLRFKLASPSPTKKGYPAALLSGIEWLQQFFAEADRAYGTTNAGVHYINMHTYDCDVASVSDRIDCLSTAFDGLPIIVSEVGCAAAKLAGNATMMMDFMQQVVPMLEAHPRVAYYSWFNGLDKYAALPASS 245
BLAST of jgi.p|Trimin1|136059 vs. uniprot
Match: A0A835YYY4_9STRA (Glycosyl hydrolase catalytic core-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYY4_9STRA) HSP 1 Score: 404 bits (1039), Expect = 7.920e-140 Identity = 191/244 (78.28%), Postives = 209/244 (85.66%), Query Frame = 1 Query: 4 CTKSKKRGVSIDPRISGAYSAREVGLLAKGARWYNNWNVTSNDPTAFRRLAFMPMVWSRYGADHWMQAIKQTPLKGGAGSIILGFNEPNSHSQSNMTPQLAAAEWGAVLARAKQLRFKLASPSPTKKGYPAALLSGIEWLQQFFAEADRAYGTTNAGVHYINMHTYDCDVASVSDRIDCLSTAFDGLPIIVSEVGCAAAKLAGNATMMMDFMQQVVPMLEAHPRVAYYSWFNGLDKYAALPASS 735 CTKSKKRGVSIDPR SG Y ARE LLA G RWYNNWNVTS + TAF RLAFMPMVWSRYGA HW+QAI+ P GG GSI+LGFNEPN Q+NMTPQ+AA+ WG VL RAK+L FKLASPSPTKKGYPAALLSGI WLQQFFAEAD+ Y TTNAGVHYINMH+YDC++A+V DRID +S F+ +I+SEVGCAAAKLAGNATMMMDFMQQVVPMLEAHPRVAYYSWFNGL+KYA PASS Sbjct: 23 CTKSKKRGVSIDPRSSGDYFAREGSLLATGVRWYNNWNVTSQNATAFSRLAFMPMVWSRYGATHWLQAIQPPPTPGGPGSILLGFNEPNGQMQANMTPQVAASVWGGVLDRAKELDFKLASPSPTKKGYPAALLSGIVWLQQFFAEADQLYNTTNAGVHYINMHSYDCNIATVKDRIDLVSATFNDTRVIISEVGCAAAKLAGNATMMMDFMQQVVPMLEAHPRVAYYSWFNGLEKYAVSPASS 266
BLAST of jgi.p|Trimin1|136059 vs. uniprot
Match: UPI001E1D7362 (uncharacterized protein LOC123535364 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D7362) HSP 1 Score: 95.1 bits (235), Expect = 5.010e-19 Identity = 59/184 (32.07%), Postives = 91/184 (49.46%), Query Frame = 1 Query: 151 LAFMPMVWSRYGADHWMQAIKQTPLKGGAGSIILGFNEPNSHSQSNMTPQLAAAEWGAVLARAKQLRFKLASPSPTKKGYPAALLSGIEWLQQFFAEADRAYGTTNAGVHYINMHTYDCDVASVSDRIDCLSTAFDGLPIIVSEVGCAAAKLAGNATMMMDFMQQVVPMLEAHPRVAYYSWFNG 702 L ++PMVW H + LGFNEPN +Q+N+T + AAA W + A A + KL SPS ++ G P+ + S W FF+E N + +I HTY CD V ++ L T ++ + ++E C + + +M+ FM+Q++P+LEA V YSW+ G Sbjct: 73 LGYVPMVWGAQDNPHIQSD----------STYCLGFNEPNHPNQANLTSEAAAAGWRELEAAANGI--KLVSPSASECGGPSCIDSTKGWFDGFFSEC------ANCTIDFIATHTYMCDAGKVMSILEDLYTTYNKT-VWLTEFACGKIE---HPELMLIFMKQILPLLEAADYVYRYSWYKG 234
BLAST of jgi.p|Trimin1|136059 vs. uniprot
Match: UPI0013A57DAF (glycosyl hydrolase n=1 Tax=Hymenobacter nivis TaxID=1850093 RepID=UPI0013A57DAF) HSP 1 Score: 90.5 bits (223), Expect = 3.650e-17 Identity = 73/242 (30.17%), Postives = 106/242 (43.80%), Query Frame = 1 Query: 7 TKSKKRGVSIDPRISGAYSAREVGLLAKGARWYNNWNVTSNDPTA--FRRLA--FMPMVWSRYGADHWMQAIKQTPLKGGAGSIILGFNEPNSHSQSNMTPQLAAAEWGAVLARAKQLRFKLASPSPTKKG-----YPAALLSGIEWLQQFFAEADRAYGTTNAGVHYINMHTYDCDVASVSDRIDCLSTAFDGLPIIVSEVGCAAAKLAG-NATMMMDFMQQVVPMLEAHPRVAYYSWFNG 702 TKS KRG++ D + SA ++ LA G W+ N+ N A + LA ++P+ W + + A + +LGFNEPN SQSN+TP AAA W + A++ + KL SP+ G S ++L FFA N V YI +HTY C+ + ++ PI ++E C A A +M V LE P + YSWF+G Sbjct: 32 TKSPKRGLAYDYK-----SAADLQALAPGTSWWYNYTSVPNASVAGMYGGLAVDYVPIQWGARLGNGPVTADQLAANIPAGTQYLLGFNEPNFLSQSNLTPTQAAAIWPVLQEVARRKKLKLVSPALNYCGGCVQENGVTYYSPTQYLDAFFAACP------NCQVDYIALHTYVCEEQYLRQKV--AEVKKYNKPIWLTEFACGDAPTAQITLAAQKKYMLDAVNYLENEPDIFRYSWFSG 260
BLAST of jgi.p|Trimin1|136059 vs. uniprot
Match: F8P4R7_SERL9 (Glyco_hydro_cc domain-containing protein n=2 Tax=Serpula lacrymans var. lacrymans TaxID=341189 RepID=F8P4R7_SERL9) HSP 1 Score: 85.9 bits (211), Expect = 1.980e-16 Identity = 57/216 (26.39%), Postives = 94/216 (43.52%), Query Frame = 1 Query: 100 WYNNWNVTSNDPTAFRRLAFMPMVWSRYGADHWMQAIKQTPLKGGAGSIILGFNEPNSHSQSNMTPQLAAAEWGAVLARAKQLRFKLASPSPTKKGYPAALLSGIEWLQQFFAEADRAYGTTNAGVHYINMHTYDCDVASVSDRIDCLSTAFDGLPIIVSEVGCAAAKLAGNATMMMDFMQQVVPMLEAHPRVAYYSWF-----NGLDKYAALPAS 732 W +W T A L ++PM W G + + + K ILGFNEP+ SQSN+ P AA+ W + K L +P+ T +GI WLQQF ++ + ++ +H Y V++ ++ + F P+ V+E A + N+T + F+ V+ L+A + Y+WF +G Y+ L +S Sbjct: 48 WVYDWGTTPASYIASSGLPYIPMQWGTSGVESFAATVTSQGAK-----TILGFNEPDLSSQSNVDPSTAASLWTQYIQPLKAQGVTLGAPAVTNGP------TGIPWLQQFLGNC------SSCDIDFVPLHWYGEGVSNFESYVEQFHSTFPSYPLWVTEF----ASTSTNSTDVETFLTAVLTWLDAQSYITGYAWFALFRDDGTSYYSLLNSS 242
BLAST of jgi.p|Trimin1|136059 vs. uniprot
Match: A0A8H4QU30_9AGAR (Glyco_hydro_cc domain-containing protein n=1 Tax=Agrocybe pediades TaxID=84607 RepID=A0A8H4QU30_9AGAR) HSP 1 Score: 85.1 bits (209), Expect = 3.880e-16 Identity = 63/231 (27.27%), Postives = 99/231 (42.86%), Query Frame = 1 Query: 10 KSKKRGVSIDPRISGAYSA--REVGLLAKGARWYNNWNVTSNDPTAFRRLAFMPMVWSRYGADHWMQAIKQTPLKGGAGSIILGFNEPNSHSQSNMTPQLAAAEWGAVLARAKQLRFKLASPSPTKKGYPAALLSGIEWLQQFFAEADRAYGTTNAGVHYINMHTYDCDVASVSDRIDCLSTAFDGLPIIVSEVGCAAAKLAGNATMMMDFMQQVVPMLEAHPRVAYYSWF 696 K KRG++ A+SA ++ W NW +++D A + F+PM W G D++ T +K IILGFNEP+ SQSN+ AAA W + +L +P+ T G WL F A G T + +I H Y + + S+ + + F P+ V+E A + + T + +FM + L++ + YSWF Sbjct: 20 KDSKRGLA---NADSAFSADIKKANTSTSLVSWQYNWGSSASDTLAKSGIQFIPMQWGTSGIDNF-----STKVKSQGAQIILGFNEPDLASQSNIDAASAAALWKKYIDPLAASGVRLGAPAVTSGP------GGQVWLAAFLAACS---GCT---IDFIPFHWYGTGIDNFSNYVSSMHARFPNYPLWVTEF----ASTSSDTTEVANFMNSAIQHLDSLDWIERYSWF 226
BLAST of jgi.p|Trimin1|136059 vs. uniprot
Match: A0A225AL79_9EURO (Glyco_hydro_cc domain-containing protein n=1 Tax=Talaromyces atroroseus TaxID=1441469 RepID=A0A225AL79_9EURO) HSP 1 Score: 84.7 bits (208), Expect = 6.400e-16 Identity = 68/237 (28.69%), Postives = 107/237 (45.15%), Query Frame = 1 Query: 19 KRGVSIDPRISGAYSAREVGLLAKGARWYNNWNVTSNDPTAFRRLAFMPMVWSRYGADHWMQAIKQTPLKGGAGSIILGFNEPNSHSQSNMTPQLAAAEWGAVLARAKQLRFKLASPSPTKKGYPAALLSGIEWLQQFFAEADRAYGTTNAGVHYINMHTYDCDVASVSDRIDCLSTAFDGLPIIVSEVGCAAAKLA-----GNATMMMDFMQQVVPMLEAHPRVAYYSWFNGLDKY 714 KR + ++ AY+ + L A W NWN S D T + + PM+W + W A+ T L GG+ + +LGFNEP+ SQSNM+PQ AA ++ + + L SP+ T A G W+Q + + A +HY D A SD D ++ A + S+ G + + G+A + F+Q+V+P L ++ V Y++F D Y Sbjct: 32 KRATTSTSKVGSAYNDVSLISLISDASWAYNWNDAS-DGTVPSGVEYCPMLWGPKMYNSWTSAVS-TALSGGS-TCVLGFNEPDLGSQSNMSPQQAAIDYQTYITPLAG-QATLVSPAITNG---AGENVGFNWMQNWLTACNGACKPNVMAIHYY------AD-APASDFFDHVNNATS----LASQNGMDSVWITEFQHTGSAADQVAFLQEVIPWLNSNTGVGRYAYFFTADGY 250
BLAST of jgi.p|Trimin1|136059 vs. uniprot
Match: UPI001E1DD565 (alkali-sensitive linkage protein 1-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DD565) HSP 1 Score: 84.7 bits (208), Expect = 6.800e-16 Identity = 58/180 (32.22%), Postives = 85/180 (47.22%), Query Frame = 1 Query: 157 FMPMVWSRYGADHWMQAIKQTPLKGGAGSIILGFNEPNSHSQSNMTPQLAAAEWGAVLARAKQLRFKLASPSPTKKGYPAALLSGIEWLQQFFAEADRAYGTTNAGVHYINMHTYDCDVASVSDRIDCLSTAFDGLPIIVSEVGCAAAKLAGNATMMMDFMQQVVPMLEAHPRVAYYSWF 696 F+PMVW Y W AG ++LG NEPN SQS++TP AAA W + + + L S +P G + EWL +FFA T+ V YI HTY C V D + + + G PI ++E C K N ++ +MQ+++P LE+ + Y+W+ Sbjct: 73 FIPMVWGFY----WNTDYTCHTDVSNAG-VLLGPNEPNHQSQSDLTPAEAAAAWPSFESNSNGLALVAPSAAPCGSGCNG---NTTEWLDEFFALC------TDCRVDYIATHTYWCGVDKTMDFLQMIYDRY-GKPIWLTEFACRHKK--NNPAKVLSYMQEILPRLESATFIHKYAWY 235
BLAST of jgi.p|Trimin1|136059 vs. uniprot
Match: A0A126PGZ9_9BACT (Carbohydrate-binding protein n=2 Tax=Hymenobacter sp. PAMC 26628 TaxID=1484118 RepID=A0A126PGZ9_9BACT) HSP 1 Score: 86.3 bits (212), Expect = 7.580e-16 Identity = 71/242 (29.34%), Postives = 105/242 (43.39%), Query Frame = 1 Query: 7 TKSKKRGVSIDPRISGAYSAREVGLLAKGARWYNNWNVTSNDPTA--FRRLA--FMPMVWSRYGADHWMQAIKQTPLKGGAGSIILGFNEPNSHSQSNMTPQLAAAEWGAVLARAKQLRFKLASPSPTKKGY-----PAALLSGIEWLQQFFAEADRAYGTTNAGVHYINMHTYDCDVASVSDRIDCLSTAFDGLPIIVSEVGCAAAKLAG-NATMMMDFMQQVVPMLEAHPRVAYYSWFNG 702 TKS KRG++ D + SA ++ LA G W+ N+ + A + LA ++P+ W + + A + +LGFNEPN SQSN+TP AAA W + A++ KL SP+ G S ++L FFA N V YI +HTY C+ + ++ PI ++E C A A +M V LE P + Y+WF+G Sbjct: 31 TKSPKRGLAYDYK-----SAADLQALAPGTSWWYNYTSVPDASVAGVYGGLAVDYVPIQWGSRLNNGPVTADQLAANIPAGTQYLLGFNEPNFLSQSNLTPTQAAAIWPVLQEVARRKNLKLVSPALNYCGNCVQENGVTYYSPTQYLDAFFAACP------NCQVDYIALHTYVCEEQYLRQKV--AEVKKYNKPIWLTEFACGDAPAAQITLATQKKYMLDAVNYLENEPAIFRYAWFSG 259
BLAST of jgi.p|Trimin1|136059 vs. uniprot
Match: A0A8H8NU92_9AGAM (Glycoside hydrolase family 128 protein n=2 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H8NU92_9AGAM) HSP 1 Score: 84.7 bits (208), Expect = 1.000e-15 Identity = 64/226 (28.32%), Postives = 98/226 (43.36%), Query Frame = 1 Query: 52 GAYSAREVGLLAKGARWYNNWNVTS--NDPTAFRRLAFMPMVWSRYGADHWMQAIKQTPLKGGAGSIILGFNEPNSHSQSNMTPQLAAAEWGAVLA--RAKQLRFKLASPSPTKKGYPAALLSGIEWLQQFFAEADRAYGTTNAGVHYINMHTYDCDVASVSDRIDCLSTAFDGLPIIVSEVGCAAAKLAGNAT--MMMDFMQQVVPMLEAHPRVAYYSWFNGLDK 711 G S E G ++ WY W+ TS P L F+PM+W A + +A+ + + ILG NEP SQSNM+P AA W L RAK +L SP+P+ + +GI+W+ F + G T V +I +H Y + I+ AF PI V+E C + +++F+ + ++ V Y+WF + K Sbjct: 36 GEISQFEAGKVS----WYYTWSPTSWVQPPP---NLEFVPMLWGGKDASTFAKAVTPDSIAANGWTHILGMNEPQEESQSNMSPGDAANMWKTYLEPLRAKNPNLRLGSPAPSSRP------NGIQWIHDFIGNCNVNGGCT---VDFIALHYYGVNSTQFIQHINDYHNAFQR-PIWVTEWACQDFNNGPQCSYNQIVEFLDETQTYMDNTDWVERYAWFGAMAK 244 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|136059 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_18570 ID=mRNA_18570|Name=jgi.p|Trimin1|136059|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=735bp|location=Sequence derived from alignment at Contig_256:50309..51043- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ACCTGCACAAAGTCAAAGAAGCGCGGCGTATCCATCGACCCACGCATCAGback to top protein sequence of jgi.p|Trimin1|136059 >Trimin1|136059|gw1.256.17.1 ID=Trimin1|136059|gw1.256.17.1|Name=jgi.p|Trimin1|136059|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=245bp TCTKSKKRGVSIDPRISGAYSAREVGLLAKGARWYNNWNVTSNDPTAFRRback to top mRNA from alignment at Contig_256:50309..51043- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_18570 ID=mRNA_18570|Name=jgi.p|Trimin1|136059|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=735bp|location=Sequence derived from alignment at Contig_256:50309..51043- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_256:50309..51043- >mRNA_18570 ID=mRNA_18570|Name=jgi.p|Trimin1|136059|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=735bp|location=Sequence derived from alignment at Contig_256:50309..51043- (Tribonema minus UTEX_B_3156 )back to top |