mRNA_6708 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|348513 vs. uniprot
Match: A0A836CGJ2_9STRA (Mannose-P-dolichol utilization defect 1 protein homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGJ2_9STRA) HSP 1 Score: 495 bits (1275), Expect = 7.510e-175 Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 1
Query: 1 MLRNVYRYSGGASGDAAAGDVKDVVAGGLYSFLQLPPSATAAETARVIFAKLAGLGIIVGSMGMKLPQIMRILEARSVLGLSLTANYFEVPLVSNGVIYHFKKGYPFSAYGENAFLLVQNLIVVALMWRYSAPPMKHRAMAAMTATFVALCVGTYSLPDRWQPLLVLSSTPLILLVTIPQILVNARQGHTGQMSAITVALKLGGSAIRLATTLIEIGVDRALLLNYGLGTVLNGVLMAQWYLMRDATQAAIEFKGEHSE 777
MLRNVYRYSGGASGDAAAGDVKDVVAGGLYSFLQLPPSATAAETARVIFAKLAGLGIIVGSMGMKLPQIMRILEARSVLGLSLTANYFEVPLVSNGVIYHFKKGYPFSAYGENAFLLVQNLIVVALMWRYSAPPMKHRAMAAMTATFVALCVGTYSLPDRWQPLLVLSSTPLILLVTIPQILVNARQGHTGQMSAITVALKLGGSAIRLATTLIEIGVDRALLLNYGLGTVLNGVLMAQWYLMRDATQAAIEFKGEHSE
Sbjct: 1 MLRNVYRYSGGASGDAAAGDVKDVVAGGLYSFLQLPPSATAAETARVIFAKLAGLGIIVGSMGMKLPQIMRILEARSVLGLSLTANYFEVPLVSNGVIYHFKKGYPFSAYGENAFLLVQNLIVVALMWRYSAPPMKHRAMAAMTATFVALCVGTYSLPDRWQPLLVLSSTPLILLVTIPQILVNARQGHTGQMSAITVALKLGGSAIRLATTLIEIGVDRALLLNYGLGTVLNGVLMAQWYLMRDATQAAIEFKGEHSE 259
BLAST of jgi.p|Trimin1|348513 vs. uniprot
Match: L1ID68_GUITC (Mannose-P-dolichol utilization defect 1 protein homolog n=3 Tax=Guillardia theta TaxID=55529 RepID=L1ID68_GUITC) HSP 1 Score: 190 bits (483), Expect = 4.040e-55 Identity = 101/202 (50.00%), Postives = 135/202 (66.83%), Query Frame = 1
Query: 136 RVIFAKLAGLGIIVGSMGMKLPQIMRILEARSVLGLSLTANYFEVPLVSNGVIYHFKKGYPFSAYGENAFLLVQNLIVVALMWRYSAPPMKHRAMAAMTATFVALCVGTYSLPDRWQPLLVLSSTPLILLVTIPQILVNARQGHTGQMSAITVALKLGGSAIRLATTLIEIGVDRALLLNYGLGTVLNGVLMAQWYLMRDAT 741
+V+ +K G GI+VGS+ +++PQ++RIL +RSV+GLS TA Y EVP+ S+ VIYHF GYP + YGEN +L+QNLIVVAL+W + P + R M T +FV LC SLP P L+ + P I T+PQIL NARQGHTGQ+S +T LKL G +R+ TT+ +IG+D LLL Y G +N L+ Q + RDAT
Sbjct: 27 QVMVSKFLGYGILVGSLFLQVPQLLRILLSRSVVGLSATARYSEVPINSSSVIYHFLLGYPLACYGENIVVLIQNLIVVALIWAWRTPRVPVREMLFCTLSFVVLCAAQLSLPKELLPWLIYVNIPFIFGSTVPQILANARQGHTGQLSILTCFLKLVGCCVRIFTTITQIGLDPGLLLGYFAGASMNLTLVLQGFYYRDAT 228
BLAST of jgi.p|Trimin1|348513 vs. uniprot
Match: A0A6T7RA07_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A6T7RA07_9CRYP) HSP 1 Score: 177 bits (448), Expect = 4.370e-49 Identity = 93/192 (48.44%), Postives = 128/192 (66.67%), Query Frame = 1
Query: 136 RVIFAKLAGLGIIVGSMGMKLPQIMRILEARSVLGLSLTANYFEVPLVSNGVIYHFKKGYPFSAYGENAFLLVQNLIVVALMWRYSAPPMKHRAMAAMTATFVALCVGTYSLPDRWQPLLVLSSTPLILLVTIPQILVNARQGHTGQMSAITVALKLGGSAIRLATTLIEIGVDRALLLNYGLGTVLNGVLM 711
+V+ +K G GI+VGS+ +++PQ++RIL +RSV+G+S TA Y EVP+ S+ VIYHF GYP + YGEN +L+QNLIVVAL+W + P + R M +F LCV SLP P L+ + P I T+PQI+ NARQGHTGQ+S +T LKL G +R+ TT+ +IG+D LLL Y G +N L+
Sbjct: 74 QVLVSKFLGYGILVGSLFLQVPQLLRILLSRSVVGISATARYSEVPINSSSVIYHFLLGYPLACYGENIVVLIQNLIVVALIWAWRTPRVPVREMVFCLVSFALLCVCQLSLPKELLPWLIYVNIPFIFGSTVPQIVANARQGHTGQLSILTCFLKLVGCCVRIFTTITQIGLDPGLLLGYIAGATMNLTLV 265
BLAST of jgi.p|Trimin1|348513 vs. uniprot
Match: A0A8K1CVN7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CVN7_PYTOL) HSP 1 Score: 160 bits (406), Expect = 1.220e-43 Identity = 88/206 (42.72%), Postives = 128/206 (62.14%), Query Frame = 1
Query: 136 RVIFAKLAGLGIIVGSMGMKLPQIMRILEARSVLGLSLTANYFEVPLVSNGVIYHFKKGYPFSAYGENAFLLVQNLIVVALMWRYSAPPMKHRAMAAMTATFVALCVGTYSLPDRWQPLLVLSSTPLILLVTIPQILVNARQGHTGQMSAITVALKLGGSAIRLATTLIEIGVDRALLLNYGLGTVLNGVLMAQWYLMRDATQAAI 753
+ + +KL G II GS +KLPQI++I+ A+ V GL+ T+ Y EV L +G +Y+ KGYP S +GEN +LVQN+I+V L+W YS P + A+ TFVA+ G P Q +LV + P+ ++ IPQ++ N +QGHTGQ++ +T+ L GG+ RL TTL E G D+ L+ G+ VLNG+L+ Q L AT A+
Sbjct: 36 KFVVSKLLGYAIITGSFVLKLPQILKIIGAKDVTGLTPTSFYMEVLLYVSGTVYNVLKGYPVSTWGENLVILVQNIILVLLLWAYSTPKIPISTRLALVVTFVAVTTGMLLTPPELQWVLVSAGIPVTIVARIPQVISNFKQGHTGQLAFVTLVLNFGGTIARLFTTLQETG-DQVQLIGLGVAIVLNGLLVLQVLLFWGATNKAL 240
BLAST of jgi.p|Trimin1|348513 vs. uniprot
Match: A0A5D6XZP8_9STRA (Mannose-P-dolichol utilization defect 1 protein homolog n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZP8_9STRA) HSP 1 Score: 159 bits (401), Expect = 1.260e-42 Identity = 85/206 (41.26%), Postives = 125/206 (60.68%), Query Frame = 1
Query: 136 RVIFAKLAGLGIIVGSMGMKLPQIMRILEARSVLGLSLTANYFEVPLVSNGVIYHFKKGYPFSAYGENAFLLVQNLIVVALMWRYSAPPMKHRAMAAMTATFVALCVGTYSLPDRWQPLLVLSSTPLILLVTIPQILVNARQGHTGQMSAITVALKLGGSAIRLATTLIEIGVDRALLLNYGLGTVLNGVLMAQWYLMRDATQAAI 753
+++ +K G II GS+ +KLPQI++IL AR V GL+ + Y EV L + +Y+ KGYP S +GEN +L QN+++V L+W Y P + + A+ FVA+ G P +Q LL + P+ ++ IPQI+ N +QGHTGQ++ +T+ L GGS R+ TTL E G D LL +G+G +LNG L+ Q L AT A+
Sbjct: 59 KLVVSKALGYAIIAGSLVLKLPQILKILRARDVTGLTPASFYLEVLLFVSSTVYNVLKGYPVSTWGENLIILAQNIVLVLLLWTYVTPKIAYSTRLALVVAFVAVTAGALLTPPEYQWLLASAGIPVSIVARIPQIVSNFKQGHTGQLAFVTLVLNFGGSVARIFTTLQETG-DPVQLLGFGVGILLNGTLVLQVLLFWGATNKAL 263
BLAST of jgi.p|Trimin1|348513 vs. uniprot
Match: A0A7S2TQL9_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TQL9_9EUKA) HSP 1 Score: 157 bits (398), Expect = 4.550e-42 Identity = 85/216 (39.35%), Postives = 134/216 (62.04%), Query Frame = 1
Query: 103 LPPSATAAETARVIFAKLAGLGIIVGSMGMKLPQIMRILEARSVLGLSLTANYFEVPLVSNGVIYHFKKGYPFSAYGENAFLLVQNLIVVALMWRYSAPPMKHRAMAAMTATFVALCVGTYSLPDRWQPLLVLSSTPLILLVTIPQILVNARQGHTGQMSAITVALKLGGSAIRLATTLIEIGVDRALLLNYGLGTVLNGVLMAQWYLMRDATQAA 750
L A + +V +K G ++ GS +++PQI++I A+S G+S + Y+ VP+ S+ V+YH + YPFS YGEN +L+QN +V L+W Y+ P+K +A +T FVA+ + LP +P L+ ++ P +L +PQI+ N R G+TGQ++ + ALK G A+R+ TTL +IG+D ALL N+ L VLN +L+ Q ++MR+ T A
Sbjct: 60 LKARAASENVLQVALSKAFGYSLMTGSFMLEVPQIVKIWAAKSAKGISAASRYWAVPMYSSSVVYHILEKYPFSCYGENLVILLQNFAIVGLLWYYNRTPVKE--VAGVTGAFVAMTALQFQLPPGLRPALIYANIPCMLGAYVPQIVENHRAGNTGQLAILPAALKCVGCAMRVFTTLTQIGMDIALLANFILSLVLNAILVFQGWVMRENTARA 273
BLAST of jgi.p|Trimin1|348513 vs. uniprot
Match: A0A024TCH2_9STRA (Mannose-P-dolichol utilization defect 1 protein homolog n=9 Tax=Aphanomyces TaxID=100860 RepID=A0A024TCH2_9STRA) HSP 1 Score: 156 bits (395), Expect = 5.010e-42 Identity = 93/222 (41.89%), Postives = 138/222 (62.16%), Query Frame = 1
Query: 88 YSFLQLPPSATAAETARVIFAKLAGLGIIVGSMGMKLPQIMRILEARSVLGLSLTANYFEVPLVSNGVIYHFKKGYPFSAYGENAFLLVQNLIVVALMWRYSAPPMKHRAMAAMTATFVALCVGTYSLPDRWQPLLVLSSTPLILLVTIPQILVNARQGHTGQMSAITVALKLGGSAIRLATTLIEIGVDRALLLNYGLGTVLNGVLMAQWYLMRDATQAAI 753
+ FLQ+ E + + +KL G II+GS +KLPQI++I+ A +V GL+ ++ Y EV V+Y+ KGYP S++GE+A +L+QN I+V L+W YS + + +T FVAL G + LP + LL +S PL ++ IPQI+ N +QGHTGQ++ +T+ L GGSA RL TTL E G D+ +L + + +LNG L+AQ L AT+AA+
Sbjct: 28 FDFLQI-------ECGKAVVSKLLGYLIILGSFILKLPQILKIVAAGNVAGLNPSSFYLEVITFQASVVYNVLKGYPISSWGESAVILIQNAILVLLLWHYSGAAKSTQFLGVVT--FVALGAGMFYLPSEFNWLLPSASIPLSVMARIPQIMSNFQQGHTGQLAFLTLFLNFGGSAARLFTTLQETG-DQVVLFGFAISMLLNGTLLAQIGLYWSATEAAM 239
BLAST of jgi.p|Trimin1|348513 vs. uniprot
Match: A0A6G0XK20_9STRA (Mannose-P-dolichol utilization defect 1 protein homolog n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XK20_9STRA) HSP 1 Score: 156 bits (394), Expect = 7.030e-42 Identity = 93/222 (41.89%), Postives = 136/222 (61.26%), Query Frame = 1
Query: 88 YSFLQLPPSATAAETARVIFAKLAGLGIIVGSMGMKLPQIMRILEARSVLGLSLTANYFEVPLVSNGVIYHFKKGYPFSAYGENAFLLVQNLIVVALMWRYSAPPMKHRAMAAMTATFVALCVGTYSLPDRWQPLLVLSSTPLILLVTIPQILVNARQGHTGQMSAITVALKLGGSAIRLATTLIEIGVDRALLLNYGLGTVLNGVLMAQWYLMRDATQAAI 753
+ FLQ+ E + + +K+ G II+GS +KLPQI++I+ A +V GLS ++ Y EV VIY+ +GYP S +GE+A +LVQN+I+V L+W YS+ P + + +T FV L G Y LP + +L +S PL + IPQI+ N RQGHTGQ++ +T+ L GGSA RL TTL E G D+ +LL + + +LNG L+ Q + AT A +
Sbjct: 28 FDFLQV-------ECGKAVVSKVLGYLIILGSFVLKLPQILKIVAAGNVAGLSPSSFYLEVVTFLASVIYNVIRGYPISTWGESAVILVQNVILVVLLWYYSSAPKTTQLLGVVT--FVGLGAGMYHLPSEFDWVLPSASIPLSVAARIPQIISNFRQGHTGQLAFLTLFLNFGGSAARLFTTLQETG-DQVVLLGFAISMLLNGTLLTQILIYWKATDAVL 239
BLAST of jgi.p|Trimin1|348513 vs. uniprot
Match: A0A8J5X6H1_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X6H1_DIALT) HSP 1 Score: 154 bits (389), Expect = 7.360e-41 Identity = 86/205 (41.95%), Postives = 124/205 (60.49%), Query Frame = 1
Query: 115 ATAAETARVIFAKLAGLGIIVGSMGMKLPQIMRILEARSVLGLSLTANYFEVPLVSNGVIYHFKKGYPFSAYGENAFLLVQNLIVVALMWRYSAPPMKHRAMAAMTATFVALCVGTYSLPDRWQPLLVLSSTPLILLVTIPQILVNARQGHTGQMSAITVALKLGGSAIRLATTLIEIGVDRALLLNYGLGTVLNGVLMAQWYLM 729
A AA T + L G G+++GS+G+KLPQI +L +RS GLSL Y EVP+ ++ IYH + GYP Y EN + QN+ +V + W PP+ H M A+ V+L +G ++LP R+QPL+ + +L +PQI +NAR G TG +S++T AL+ G +IRL TTL+ IG D+ALL YGL G ++ Q L+
Sbjct: 55 APAARTLERACSALFGAGMVLGSLGLKLPQIALLLRSRSTAGLSLAGCYGEVPMCASFAIYHARLGYPLDTYAENVVIAAQNVAIVLIYWWLDPPPVMH--MLAVATLGVSLHLGLWALPARYQPLIAHAQPLAMLWGYVPQIALNARLGCTGSLSSVTTALRFAGCSIRLLTTLLRIGQDKALLAAYGLAAGCTGAMLLQLALL 257
BLAST of jgi.p|Trimin1|348513 vs. uniprot
Match: A0A7S2V5B2_9STRA (Mannose-P-dolichol utilization defect 1 protein homolog n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5B2_9STRA) HSP 1 Score: 152 bits (385), Expect = 1.490e-40 Identity = 80/191 (41.88%), Postives = 126/191 (65.97%), Query Frame = 1
Query: 145 FAKLAGLGIIVGSMGMKLPQIMRILEARSVLGLSLTANYFEVPLVSNGVIYHFKKGYPFSAYGENAFLLVQNLIVVALMWRYSAPPMKHRAMAAMTATFVALCVGTYSLPDRWQPLLVLSSTPLILLVTIPQILVNARQGHTGQMSAITVALKLGGSAIRLATTLIEIGVDRALLLNYGLGTVLNGVLMAQ 717
F+KL G + +GS+G+KLPQI++IL+++SV GLS ++ Y E L ++YHF G P+SA+GE + VQNL++V L+WRY+ P + + + A F A+ + P QPL+ L++ P+I++ +PQIL+N + GHTGQ++ ITV + GS R+ TT+IE+G D L+L+Y +G+ LN + Q
Sbjct: 38 FSKLLGYALSLGSLGLKLPQILKILKSKSVEGLSPSSFYSEEALYVLCLMYHFIIGSPWSAFGEVISIFVQNLVLVGLLWRYAKPTIGLTSRLLVLAVFAAIAAACWYCPPSLQPLIPLANVPVIVMARVPQILLNFKNGHTGQLAFITVCMNAFGSLSRVLTTIIEVGGDWGLVLSYSVGSSLNTFIFLQ 228 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348513 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_6708 ID=mRNA_6708|Name=jgi.p|Trimin1|348513|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1118bp|location=Sequence derived from alignment at Contig_25:995857..1005769+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCTAAGGAATGTATACCGCTATTCTGGGGGAGCGAGCGGAGACGCAGCback to top protein sequence of jgi.p|Trimin1|348513 >Trimin1|348513|estExt_Genemark1.C_Ctg_250124 ID=Trimin1|348513|estExt_Genemark1.C_Ctg_250124|Name=jgi.p|Trimin1|348513|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=260bp MLRNVYRYSGGASGDAAAGDVKDVVAGGLYSFLQLPPSATAAETARVIFAback to top mRNA from alignment at Contig_25:995857..1005769+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_6708 ID=mRNA_6708|Name=jgi.p|Trimin1|348513|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=9913bp|location=Sequence derived from alignment at Contig_25:995857..1005769+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_25:995857..1005769+ >mRNA_6708 ID=mRNA_6708|Name=jgi.p|Trimin1|348513|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=780bp|location=Sequence derived from alignment at Contig_25:995857..1005769+ (Tribonema minus UTEX_B_3156 )back to top |