mRNA_17855 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|354425 vs. uniprot
Match: A0A835Z154_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z154_9STRA) HSP 1 Score: 287 bits (734), Expect = 2.780e-98 Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 1
Query: 1 MREQTVREEGADDRFLLFQYDEVLCGLFAYNMIRGDLCVDADWVVPDDDPWPMPLRGLPLGFLVNVVRLQRDVLYRHYPERYRMLDGLGFYWLDPVFEDWQDISVRGVGDGKPLPGPFGDILDGAKQLDSR 393
MREQTVREEGADDRFLLFQYDEVLCGLFAYNMIRGDLCVDADWVVPDDDPWPMPLRGLPLGFLVNVVRLQRDVLYRHYPERYRMLDGLGFYWLDPVFEDWQDISVRGVGDGKPLPGPFGDILDGAKQLDSR
Sbjct: 1 MREQTVREEGADDRFLLFQYDEVLCGLFAYNMIRGDLCVDADWVVPDDDPWPMPLRGLPLGFLVNVVRLQRDVLYRHYPERYRMLDGLGFYWLDPVFEDWQDISVRGVGDGKPLPGPFGDILDGAKQLDSR 131
BLAST of jgi.p|Trimin1|354425 vs. uniprot
Match: A0A6H5JXP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXP7_9PHAE) HSP 1 Score: 102 bits (254), Expect = 1.670e-22 Identity = 38/93 (40.86%), Postives = 62/93 (66.67%), Query Frame = 1
Query: 28 GADDRFLLFQYDEVLCGLFAYNMIRGDLCVDADWVVPDDDPWPMPLRGLPLGFLVNVVRLQRDVLYRHYPERYRMLDGLGFYWLDPVFEDWQD 306
G D+ +L FQ+ EVL ++ ++G L V +V+P +DPWP+PL G P+G +N++R Q+D+L HYPER+ +L +G W +P+ DW++
Sbjct: 948 GDDELYLYFQWPEVLISFYSVIKLKGHLDVSPQYVIPHEDPWPLPLHGTPVGLYLNIIRAQKDLLMEHYPERFEILRSMGIMWNEPLLVDWRE 1040
BLAST of jgi.p|Trimin1|354425 vs. uniprot
Match: D7FJQ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJQ7_ECTSI) HSP 1 Score: 99.0 bits (245), Expect = 2.620e-21 Identity = 37/93 (39.78%), Postives = 62/93 (66.67%), Query Frame = 1
Query: 28 GADDRFLLFQYDEVLCGLFAYNMIRGDLCVDADWVVPDDDPWPMPLRGLPLGFLVNVVRLQRDVLYRHYPERYRMLDGLGFYWLDPVFEDWQD 306
G D+ +L FQ+ EVL ++ ++G L V +V+P +DPWP+PL G P+G +N++R Q+D+L +YPER+ +L +G W +P+ DW++
Sbjct: 628 GDDELYLYFQWPEVLISFYSVIKLKGHLDVSPQYVIPHEDPWPLPLHGTPVGLYLNIIRAQKDLLMDNYPERFEILRSMGIMWNEPLLVDWRE 720
BLAST of jgi.p|Trimin1|354425 vs. uniprot
Match: A0A8J2SVI2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SVI2_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 3.140e-20 Identity = 52/115 (45.22%), Postives = 69/115 (60.00%), Query Frame = 1
Query: 10 QTVREEG---ADDRFLLFQYDEVLCGLFAYNMIRGDLCVDADWVVPDDDPWPMPLRGLPLGFLVNVVRLQRDVLYRHYPERYRMLDGLGFYWLDPVFEDWQDISVRGVGDGKPLP 345
QT+ E G D R ++E L LF+++ I+G L V D+VVP++DPWP+PLR PLG VN VR Q+ V RH+ ER R LD +GF WL P+FE D + D +P P
Sbjct: 531 QTLDELGFEWGDRRISGLSWNEFLGCLFSFSKIKGSLNVRWDFVVPNEDPWPLPLRNAPLGRWVNEVRAQQPVFERHFAERKRFLDLMGFKWLPPLFEG-DDATSDEARDQRPPP 644
BLAST of jgi.p|Trimin1|354425 vs. uniprot
Match: F0YNU5_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YNU5_AURAN) HSP 1 Score: 91.3 bits (225), Expect = 1.300e-18 Identity = 43/80 (53.75%), Postives = 54/80 (67.50%), Query Frame = 1
Query: 55 QYDEVLCGLFAYNMIRGDLCVDADWVVPDDDPWPMPLRGLPLGFLVNVVRLQRDVLYRHYPERYRMLDGLGFYWLDPVFE 294
Q+D L LF+++ I+G + VD D+VVPD+DPWP PLR PLG VN VR Q+ H+ ER R LD +GF WL PVFE
Sbjct: 593 QWDAFLACLFSHSKIKGTVNVDWDFVVPDEDPWPFPLRASPLGRWVNEVRDQQRTFDAHFGERKRFLDLMGFQWLPPVFE 672
BLAST of jgi.p|Trimin1|354425 vs. uniprot
Match: A0A7S3JX66_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JX66_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 7.320e-17 Identity = 37/79 (46.84%), Postives = 54/79 (68.35%), Query Frame = 1
Query: 55 QYDEVLCGLFAYNMIRGDLCVDADWVVPDDDPWPMPLRGLPLGFLVNVVRLQRDVLYRHYPERYRMLDGLGFYWLDPVF 291
Q+ L LF+Y+ I+G L + D+V+PD+DPWP+PLRG LG VN++R Q VL H+ R ++LD +GF +L P+F
Sbjct: 675 QWHHFLACLFSYSKIKGSLSIAWDFVIPDEDPWPLPLRGEHLGTKVNLIREQESVLRTHFKHRAQLLDAMGFVFLPPMF 753
BLAST of jgi.p|Trimin1|354425 vs. uniprot
Match: A0A7S2NS69_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NS69_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 1.990e-16 Identity = 37/90 (41.11%), Postives = 55/90 (61.11%), Query Frame = 1
Query: 28 GADDRFLLFQYDEVLCGLFAYNMIRGDLCVDADWVVPDDDPWPMPLRGLPLGFLVNVVRLQRDVLYRHYPERYRMLDGLGFYWLDPVFED 297
G D+ F+ +++ LCGL+ Y IRGD CVD ++ +PD++PWP L PLG +N VR ++D+ + Y ++R L F WL P ED
Sbjct: 343 GDDELFIGAPFEKFLCGLWVYYQIRGDACVDLEFRIPDEEPWPEALAHFPLGHAMNFVRHKKDIFWSDYRAKWRSLYRFDFLWL-PAVED 431
BLAST of jgi.p|Trimin1|354425 vs. uniprot
Match: A0A7S2JR57_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JR57_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 2.490e-16 Identity = 37/90 (41.11%), Postives = 55/90 (61.11%), Query Frame = 1
Query: 28 GADDRFLLFQYDEVLCGLFAYNMIRGDLCVDADWVVPDDDPWPMPLRGLPLGFLVNVVRLQRDVLYRHYPERYRMLDGLGFYWLDPVFED 297
G D+ F+ +++ LCGL+ Y IRGD CVD ++ +PD++PWP L PLG +N VR ++D+ + Y ++R L F WL P ED
Sbjct: 650 GDDELFIGAPFEKFLCGLWVYYQIRGDACVDLEFRIPDEEPWPEALAHFPLGHAMNFVRHKKDIFWSDYRAKWRSLYRFDFLWL-PAVED 738
BLAST of jgi.p|Trimin1|354425 vs. uniprot
Match: A0A7S3QCY2_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QCY2_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 4.170e-15 Identity = 38/109 (34.86%), Postives = 60/109 (55.05%), Query Frame = 1
Query: 28 GADDRFLLFQYDEVLCGLFAYNMIRGDLCVDADWVVPDDDPWPMPLRGLPLGFLVNVVRLQRDVLYRHYPERYRMLDGLGFYWLDPVF---------EDWQDISVRGVG 327
G+D +FL +++ +C +FAY ++RGDL V D+V+P D PWP L G LG V +R ++ ++PE+ ++L + F W + E W+D V GVG
Sbjct: 642 GSDRKFLDVPFEKSMCAMFAYFLVRGDLFVYEDFVMPGDKPWPKALAGFELGKAVKRIRELQNFFEAYHPEKVKLLRRVEFVWFPELSLPLNPEEGPESWEDTFVEGVG 750
BLAST of jgi.p|Trimin1|354425 vs. uniprot
Match: A0A1Z5KL42_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KL42_FISSO) HSP 1 Score: 75.5 bits (184), Expect = 4.320e-13 Identity = 42/125 (33.60%), Postives = 67/125 (53.60%), Query Frame = 1
Query: 16 VREEGADDRFLL-FQYDEVLCGLFAYNMIRGDLCVDADWVVPDDDPWPMPLRGLPLGFLVNVVRLQRDVLYRHYPERYRMLDGLGFYWLDPVFEDWQDISVRGVGDGKPLPGPFGDILDGAKQLD 387
+R + D+++ L +++ +C ++AY MIRGDL V D+V+PD+DPWP L G LG V +R ++ L ++PE+ +L + F W D + R + L FG D AK +D
Sbjct: 689 LRFDWGDEKYFLDVPFEKAMCAMYAYYMIRGDLFVYEDFVMPDEDPWPEALAGYELGQAVKRLRELQNFLEAYHPEKVSLLRMIDFMWFPETMALPLDPNERAMTSETLLLSAFGHP-DYAKMVD 812
BLAST of jgi.p|Trimin1|354425 vs. uniprot
Match: A0A835Z2B1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2B1_9STRA) HSP 1 Score: 311 bits (796), Expect = 3.810e-105 Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 1
Query: 1 MVFFVRNGAFGIVIGQALRHPWKECAGVEIVPALHDIAAAALAEAQRAXXXXXXXXXXXXXXXXXXXXXXALRALAPCALHLGDILTPCRGTPPTDAAARADVVFCYCSTWPAAGDLLTGLSFALAAVLRKGALVVTTDRRLASEPGAWEFALRATREGVNAETGGASVAYIWEVTQNGVGLI 549
MVFFVRNGAFGIVIGQALRHPWKECAGVEIVPALHDIAAAALAEAQRAXXXXXXXXXXXXXXXXXXXXXXALRALAPCALHLGDILTPCRGTPPTDAAARADVVFCYCSTWPAAGDLLTGLSFALAAVLRKGALVVTTDRRLASEPGAWEFALRATREGVNAETGGASVAYIWEVTQNGVGLI
Sbjct: 1 MVFFVRNGAFGIVIGQALRHPWKECAGVEIVPALHDIAAAALAEAQRAXXXXXXXXXXXXXXXXXXXXXXALRALAPCALHLGDILTPCRGTPPTDAAARADVVFCYCSTWPAAGDLLTGLSFALAAVLRKGALVVTTDRRLASEPGAWEFALRATREGVNAETGGASVAYIWEVTQNGVGLI 183
BLAST of jgi.p|Trimin1|354425 vs. uniprot
Match: A0A6H5LAT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAT6_9PHAE) HSP 1 Score: 137 bits (345), Expect = 1.770e-35 Identity = 82/174 (47.13%), Postives = 103/174 (59.20%), Query Frame = 1
Query: 13 VRNGAFGIVIGQALRHPWKECAGVEIVPALHDIAAAALAEAQRAXXXXXXXXXXXXXXXXXXXXXXALRALAPCALHLGDILTPCRGTPPTDAAARADVVFCYCSTWPAAGDLLTGLSFALAAVLRKGALVVTTDRRLASEPGAWEFALRATREGVNAETGGASVAYIWEVTQN 534
+ +G +V+ QAL PWK C GVEIVP+LHD+ AAL EA R LR++APC+L LGD+ D + DV+FCY S++PA GDLLT S+ L LR GA V+TTDRRL S+ G WEFAL REG N+ETGG S+AYIWEV ++
Sbjct: 143 IGSGCGRLVVAQALTWPWKSCRGVEIVPSLHDMGQAALQEADRLAKGEENALSPETSRL--------LRSMAPCSLSLGDV------NDDVDIS-DIDVLFCYSSSFPAFGDLLTEFSYTLGHKLRPGAQVITTDRRLVSD-GPWEFALLGEREGRNSETGGKSIAYIWEVVRS 300
BLAST of jgi.p|Trimin1|354425 vs. uniprot
Match: D7G834_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G834_ECTSI) HSP 1 Score: 91.7 bits (226), Expect = 2.730e-20 Identity = 47/77 (61.04%), Postives = 58/77 (75.32%), Query Frame = 1
Query: 304 DVVFCYCSTWPAAGDLLTGLSFALAAVLRKGALVVTTDRRLASEPGAWEFALRATREGVNAETGGASVAYIWEVTQN 534
DV+FCY S++PA GDLLT S+ L L+ GA V+TTDRRL S+ G WEFAL REG N+ETGG S+AYIWEV ++
Sbjct: 10 DVLFCYSSSFPAFGDLLTEFSYTLGHKLQPGAQVITTDRRLVSD-GPWEFALLGEREGRNSETGGKSIAYIWEVVRS 85
BLAST of jgi.p|Trimin1|354425 vs. uniprot
Match: A0A7S0Q107_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q107_9EUKA) HSP 1 Score: 85.5 bits (210), Expect = 5.690e-17 Identity = 63/176 (35.80%), Postives = 81/176 (46.02%), Query Frame = 1
Query: 13 VRNGAFGIVIGQALRHP-WKECAGVEIVPALHDIAAAALAEAQRAXXXXXXXXXXXXXXXXXXXXXXALRALAPCALHLGDILTPCRGTPPTDAAARADVVFCYCSTWPAAGDLLTGLSFALAAVLRKGALVVTTDRRLAS-EPGAWEFALRATREGVNAETGGASVAYIWEVTQN 534
V +G +V A+ P C GVE V LHD+A A + + PC GD GTPP + A D +F Y S +P+AGD LT S A + +L G ++TTD+RL S E G WEF L +G NAETGG S YIWEV ++
Sbjct: 13 VGSGCGRLVFAAAVLQPSLSRCVGVEKVAGLHDLACEAASTSPLPAGSP------------------------PCEFLCGDAFE-FLGTPPPYSLAAPDCIFIYSSAFPSAGDTLTDASLAFS-MLPAGTRIITTDKRLGSDEAGRWEFQLLKELDGPNAETGGTSTGYIWEVRRD 162 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354425 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 19
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BLAST of jgi.p|Trimin1|354425 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_17855 ID=mRNA_17855|Name=jgi.p|Trimin1|354425|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=435bp|location=Sequence derived from alignment at Contig_246:140..1699+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCGTGAGCAAACAGTGCGGGAGGAGGGCGCGGACGACCGCTTCCTCCTback to top protein sequence of jgi.p|Trimin1|354425 >Trimin1|354425|estExt_Genemark1.C_Ctg_2460001 ID=Trimin1|354425|estExt_Genemark1.C_Ctg_2460001|Name=jgi.p|Trimin1|354425|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=132bp MREQTVREEGADDRFLLFQYDEVLCGLFAYNMIRGDLCVDADWVVPDDDPback to top mRNA from alignment at Contig_246:140..1699+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_17855 ID=mRNA_17855|Name=jgi.p|Trimin1|354425|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1560bp|location=Sequence derived from alignment at Contig_246:140..1699+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_246:140..1699+ >mRNA_17855 ID=mRNA_17855|Name=jgi.p|Trimin1|354425|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=396bp|location=Sequence derived from alignment at Contig_246:140..1699+ (Tribonema minus UTEX_B_3156 )back to top |