mRNA_4994 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|348411 vs. uniprot
Match: A0A836CIN0_9STRA (Thioredoxin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIN0_9STRA) HSP 1 Score: 317 bits (811), Expect = 4.800e-108 Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 1
Query: 133 MLAFTASWCKHCKVLAPIWQTVAEELDGQVSFASIDGWENRALSRRFHVAGFPTIFFVDARGDVYAFAGTASVTTLKAFALGGYRDAAKLSSAGAPFGLRGTVKGLLIRWGAQGQALYGDLLAAGVPRWAALLGFTLCGLLVTLLLVLLGLQFQTREHLD 612
MLAFTASWCKHCKVLAPIWQTVAEELDGQVSFASIDGWENRALSRRFHVAGFPTIFFVDARGDVYAFAGTASVTTLKAFALGGYRDAAKLSSAGAPFGLRGTVKGLLIRWGAQGQALYGDLLAAGVPRWAALLGFTLCGLLVTLLLVLLGLQFQTREHLD
Sbjct: 1 MLAFTASWCKHCKVLAPIWQTVAEELDGQVSFASIDGWENRALSRRFHVAGFPTIFFVDARGDVYAFAGTASVTTLKAFALGGYRDAAKLSSAGAPFGLRGTVKGLLIRWGAQGQALYGDLLAAGVPRWAALLGFTLCGLLVTLLLVLLGLQFQTREHLD 160
BLAST of jgi.p|Trimin1|348411 vs. uniprot
Match: A0A812VHP3_9DINO (Pdia6 protein n=2 Tax=unclassified Symbiodinium TaxID=279888 RepID=A0A812VHP3_9DINO) HSP 1 Score: 98.2 bits (243), Expect = 1.230e-20 Identity = 47/117 (40.17%), Postives = 70/117 (59.83%), Query Frame = 1
Query: 40 SKASTLVSKNLHVLTSITFEPTVRYGKGGPWMLAFTASWCKHCKVLAPIWQTVAEELDGQVSFASIDGWENRALSRRFHVAGFPTIFFVDARGDVYAFAGTASVTTLKAFALGGYRD 390
S A + +H LT F+ TVR G PW + F A WC HCK LAP+W+ +AE+L+G V+ A +D L+ + + G+PT+ V + G Y F G+ ++ +L+AFA GGYR+
Sbjct: 20 SDAVDPAATKVHELTGSNFDSTVRNGHEMPWFVKFHAPWCGHCKKLAPVWEKLAEKLEGTVALAKVDATVEEGLAYEWEIEGYPTLILV-SDGHRYRFRGSRTLDSLEAFAAGGYRE 135
BLAST of jgi.p|Trimin1|348411 vs. uniprot
Match: A0A484EI82_BRELC (Thioredoxin domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EI82_BRELC) HSP 1 Score: 94.4 bits (233), Expect = 3.730e-20 Identity = 48/116 (41.38%), Postives = 71/116 (61.21%), Query Frame = 1
Query: 52 TLVSKNLHVLTSITFEPTVRYGKG---GPWMLAFTASWCKHCKVLAPIWQTVAEELDGQVSFASIDGWENRALSRRFHVAGFPTIFFVDARGDVYAFAGTASVTTLKAFALGGYRD 390
++ + N+ VLT FE + G G G W++ F A WC HCK L PI++TVA+EL G+++ A +D EN L +RF++ GFPTI + G VY +AG + L AFA G+++
Sbjct: 20 SVATSNVIVLTDSDFEHKTQAGSGATTGDWLVEFYAPWCGHCKKLTPIYETVAQELQGELNVAKVDVTENAELGKRFNIRGFPTILHF-SHGKVYKYAGKRTKDDLVAFARAGFKN 134
BLAST of jgi.p|Trimin1|348411 vs. uniprot
Match: A0A813C3A8_9DINO (Proline--tRNA ligase n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A813C3A8_9DINO) HSP 1 Score: 99.0 bits (245), Expect = 4.210e-20 Identity = 47/117 (40.17%), Postives = 70/117 (59.83%), Query Frame = 1
Query: 40 SKASTLVSKNLHVLTSITFEPTVRYGKGGPWMLAFTASWCKHCKVLAPIWQTVAEELDGQVSFASIDGWENRALSRRFHVAGFPTIFFVDARGDVYAFAGTASVTTLKAFALGGYRD 390
S A + +H LT F+ TVR G PW + F A WC HCK LAP+W+ +AE+L+G V+ A +D L+ + + G+PT+ V + G Y F G+ ++ +L+AFA GGYR+
Sbjct: 20 SDAVDPAATKVHELTGSNFDSTVRNGHEMPWFVKFHAPWCGHCKKLAPVWEKLAEKLEGTVALAKVDATVEEGLAYEWEIEGYPTLILV-SHGHRYRFRGSRTLDSLEAFAAGGYRE 135
BLAST of jgi.p|Trimin1|348411 vs. uniprot
Match: A0A812VIT4_SYMMI (Proline--tRNA ligase n=2 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VIT4_SYMMI) HSP 1 Score: 98.2 bits (243), Expect = 8.730e-20 Identity = 47/117 (40.17%), Postives = 70/117 (59.83%), Query Frame = 1
Query: 40 SKASTLVSKNLHVLTSITFEPTVRYGKGGPWMLAFTASWCKHCKVLAPIWQTVAEELDGQVSFASIDGWENRALSRRFHVAGFPTIFFVDARGDVYAFAGTASVTTLKAFALGGYRD 390
S A + +H LT F+ TVR G PW + F A WC HCK LAP+W+ +AE+L+G V+ A +D L+ + + G+PT+ V + G Y F G+ ++ +L+AFA GGYR+
Sbjct: 20 SDAVDPAATKVHELTGSNFDSTVRNGHEMPWFVKFHAPWCGHCKKLAPVWEKLAEKLEGTVALAKVDATVEEGLAYEWEIEGYPTLILV-SDGHRYRFRGSRTLDSLEAFAAGGYRE 135
BLAST of jgi.p|Trimin1|348411 vs. uniprot
Match: A0A813GR85_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813GR85_POLGL) HSP 1 Score: 95.9 bits (237), Expect = 1.010e-19 Identity = 48/129 (37.21%), Postives = 70/129 (54.26%), Query Frame = 1
Query: 40 SKASTLVSKNLHVLTSITFEPTVRYGKGGPWMLAFTASWCKHCKVLAPIWQTVAEELDGQVSFASIDGWENRALSRRFHVAGFPTIFFVDARGDVYAFAGTASVTTLKAFALGGYRDAAKLSSAGAPFG 426
S+A ++N LT F V+ G G PW + A WC HC+ LAP+W +A++L GQV +D L+ ++ V G+P I + A G + + G + L+AFALGG+ +AA SS PFG
Sbjct: 35 SRADQAAARNTLELTGENFSQAVQNGTGLPWFIKLYAPWCGHCQSLAPVWDDLAQKLQGQVVLGKVDATAEEVLAHKWEVDGYP-ILILFANGQAHLYTGPRCLAALEAFALGGWAEAASASSKEEPFG 162
BLAST of jgi.p|Trimin1|348411 vs. uniprot
Match: A0A196SKN1_BLAHN (Thioredoxin-related protein n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SKN1_BLAHN) HSP 1 Score: 92.8 bits (229), Expect = 1.280e-19 Identity = 49/113 (43.36%), Postives = 65/113 (57.52%), Query Frame = 1
Query: 55 LVSKNLHVLTSITFEPTVRYGKGGPWMLAFTASWCKHCKVLAPIWQTVAEELDGQVSFASIDGWENRALSRRFHVAGFPT-IFFVDARGDVYAFAGTASVTTLKAFALGGYRD 390
L N LT +T T GPW + F A WC HCK LAP W+ +A+E+DG+V+ A +D N ALS+ + + GFPT IFF D G + G S+ LKAF L G++D
Sbjct: 21 LNDDNFETLTQMTTGSTT-----GPWFIMFFAPWCGHCKKLAPTWENLADEVDGEVNIAKVDATANNALSKMYSIEGFPTLIFFKD--GKYVKYEGGRSLEDLKAFVLEGFKD 126
BLAST of jgi.p|Trimin1|348411 vs. uniprot
Match: H3G8D9_PHYRM (Thioredoxin domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G8D9_PHYRM) HSP 1 Score: 90.9 bits (224), Expect = 7.370e-19 Identity = 49/123 (39.84%), Postives = 71/123 (57.72%), Query Frame = 1
Query: 61 SKNLHVLTSITFEPTVRYGKG---GPWMLAFTASWCKHCKVLAPIWQTVAEELDGQVSFASIDGWENRALSRRFHVAGFPTIFFVDARGDVYAFAGTASVTTLKAFALGGYRDAAKLSSAGAP 420
+ N+ VL++ FE + G G G W++ F A WC HCK L PI++TVA +L G+V+ A +D N L +RF + GFPT+ + G Y FAG ++ L AFA GG++ +GAP
Sbjct: 20 ASNVVVLSTSDFEHKTQAGSGATTGDWLVEFYAPWCGHCKKLEPIYETVANDLKGEVNVAKVDVTANSELGKRFGIRGFPTVLHF-SHGKSYKFAGKRTLEELSAFARGGFKSVEGEVVSGAP 141
BLAST of jgi.p|Trimin1|348411 vs. uniprot
Match: A0A5B8MU99_9CHLO (Thioredoxin domain-containing protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MU99_9CHLO) HSP 1 Score: 91.7 bits (226), Expect = 8.590e-19 Identity = 52/136 (38.24%), Postives = 71/136 (52.21%), Query Frame = 1
Query: 37 DSKASTLVSKNLHVLTSITFEPTVRYGKGGPWMLAFTASWCKHCKVLAPIWQTVAEELDGQVSFASIDGWENRALSRRFHVAGFPTIFFVDARGDVYAFAGTA-SVTTLKAFALGGYRDAAKLSSAGAPFGLRGTV 441
+ A ++KN + IT GPWM+ +ASWC HCK L P W +AE+L G+V IDG EN+ LS+R HV G+PTIF VD +G + + A + L FA+ GY+ L P L G +
Sbjct: 35 EGAAEGKLTKNAGEVVEITDSNYDNLIHDGPWMVVVSASWCPHCKQLEPTWVKLAEKLRGKVRVGKIDGPENKILSKRLHVVGYPTIFHVDRKGLIRDYGDQARDLEKLYQFAVSGYKQYEPLPWYHTPHSLFGQI 170
BLAST of jgi.p|Trimin1|348411 vs. uniprot
Match: T0Q3S3_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0Q3S3_SAPDV) HSP 1 Score: 86.3 bits (212), Expect = 9.910e-16 Identity = 44/108 (40.74%), Postives = 63/108 (58.33%), Query Frame = 1
Query: 70 LHVLTSITFEPTVRYGKGGPWMLAFTASWCKHCKVLAPIWQTVAEELDGQVSFASIDGWENRALSRRFHVAGFPT-IFFVDARGDVYAFAGTASVTTLKAFALGGYRD 390
+ LT+ TF+ V W++ F A WC HCK LAP + ++++L+GQV A +D E+ AL RF + GFPT +FF D G +Y +AGT S+ L F GY +
Sbjct: 168 VEALTADTFDANVLAPGSNGWLVKFYAPWCGHCKQLAPTYDALSQDLNGQVHIAKVDVTEHEALGERFGIQGFPTLVFFKD--GKMYEYAGTRSLDALTTFVTSGYLE 273
BLAST of jgi.p|Trimin1|348411 vs. uniprot
Match: A0A835Z4L3_9STRA (Peroxisomal membrane protein PEX14 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4L3_9STRA) HSP 1 Score: 332 bits (851), Expect = 1.680e-113 Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 2
Query: 71 MSFREEMVARAVKFLLHPKVVDAPLSKKISFLEEKELTREEIDEALKRAESPESIGAAASTSKAKAQRETIQRFEHAGVQGVITGGVLHLSAVAAKDLGADAAGQARQVLEQIDAVLQAKGASRSRIISATVFVRNAQTDGGAVAAEWELWLGGENHPAFACVEAGTAVPAQLVTIQVTAAM 616
MSFREEMVARAVKFLLHPKVVDAPLSKKISFLEEKELTREEIDEALKRAESPESIGAAASTSKAKAQRETIQRFEHAGVQGVITGGVLHLSAVAAKDLGADAAGQARQVLEQIDAVLQAKGASRSRIISATVFVRNAQTDGGAVAAEWELWLGGENHPAFACVEAGTAVPAQLVTIQVTAAM
Sbjct: 1 MSFREEMVARAVKFLLHPKVVDAPLSKKISFLEEKELTREEIDEALKRAESPESIGAAASTSKAKAQRETIQRFEHAGVQGVITGGVLHLSAVAAKDLGADAAGQARQVLEQIDAVLQAKGASRSRIISATVFVRNAQTDGGAVAAEWELWLGGENHPAFACVEAGTAVPAQLVTIQVTAAM 182
BLAST of jgi.p|Trimin1|348411 vs. uniprot
Match: D8LIY3_ECTSI (Peroxisomal membrane protein PEX14 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIY3_ECTSI) HSP 1 Score: 86.7 bits (213), Expect = 5.590e-17 Identity = 66/187 (35.29%), Postives = 100/187 (53.48%), Query Frame = 2
Query: 71 MSFREEMVARAVKFLLHPKVVDAPLSKKISFLEEKELTREEIDEALKRAESPESIGAAASTSKAKAQRETIQRFEHAGV--QGVITGGVLHLSA-------VAAKDLGADAAG---------QARQVLEQIDAVLQAKGASRSRIISATVFVRNAQTDGGAVAAEWELWLGGENHPAFACVEAGTAV 577
+ R++MV RAV FL HPKV AP +K+I+FL++K+LT EEI EAL++A + A+A T A T +RF+ V + V +GG++ +S A D G G QA + L++I +L+ G+S S+++SA V VR+ D V W W+ +N PA ++ G V
Sbjct: 2 VDIRQDMVKRAVSFLRHPKVKGAPEAKQIAFLKDKQLTAEEIGEALRKAAELAAAEASAKTRAALVAAPT-KRFQKGSVRSEAVASGGIVFISGQTALPSPTAGDDSGEGDVGVAESLSPEQQAARALDKIKELLEEVGSSTSKVVSALVCVRDLGQDLPGVEKAWGRWIDKDNPPARTVIQTGAIV 187
BLAST of jgi.p|Trimin1|348411 vs. uniprot
Match: A0A3F2UCK5_9HYPH (RidA family protein n=1 Tax=Mesorhizobium sp. YM1C-6-2 TaxID=1827501 RepID=A0A3F2UCK5_9HYPH) HSP 1 Score: 72.4 bits (176), Expect = 1.250e-12 Identity = 44/102 (43.14%), Postives = 63/102 (61.76%), Query Frame = 2
Query: 308 QGVITGGVLHLSAVAAKDLGADAAGQARQVLEQIDAVLQAKGASRSRIISATVFVRNAQTDGGAVAAEWELWLGGENHPAFACVEAGTAVPAQLVTIQVTAA 613
QGV G+ SA AKD DAAGQ R+VL++IDA+L +G +S I+SAT+++ + D A+ + W+ W+ + PA ACVEA + P V IQ+ AA
Sbjct: 14 QGVSWNGMFVTSAQVAKDFDLDAAGQTREVLDKIDALLAEQGYDKSNIVSATIWLADI-ADYAAMNSVWDAWVSTDEPPARACVEARFSSPRIKVEIQIMAA 114
BLAST of jgi.p|Trimin1|348411 vs. uniprot
Match: A0A7U7ELF3_9PSED (Aminoacrylate peracid reductase RutC n=1 Tax=Pseudomonas carbonaria TaxID=2762745 RepID=A0A7U7ELF3_9PSED) HSP 1 Score: 72.4 bits (176), Expect = 1.310e-12 Identity = 41/103 (39.81%), Postives = 58/103 (56.31%), Query Frame = 2
Query: 308 QGVITGGVLHLSAVAAKDLGADAAGQARQVLEQIDAVLQAKGASRSRIISATVFVRNAQTDGGAVAAEWELWLGGENHPAFACVEAGTAVPAQLVTIQVTAAM 616
+ VI G ++L+ A DL D Q R+ L ID +L G+ RSRI+SAT+++++ D + AEW+ WL PA ACVEA P LV I + AA+
Sbjct: 14 EAVIHNGTVYLAGQLADDLTGDICQQTRETLASIDRLLAEAGSDRSRILSATIYLKDIAADYAGLNAEWDAWLVPGTAPARACVEANMYAPEVLVEISIVAAL 116
BLAST of jgi.p|Trimin1|348411 vs. uniprot
Match: A0A5Q2QE15_9GAMM (RidA family protein n=1 Tax=Litoricola lipolytica TaxID=418701 RepID=A0A5Q2QE15_9GAMM) HSP 1 Score: 70.9 bits (172), Expect = 4.590e-12 Identity = 47/114 (41.23%), Postives = 68/114 (59.65%), Query Frame = 2
Query: 281 IQRFEHAG--VQGVITGGVLHLSAVAAKDLGADAAGQARQVLEQIDAVLQAKGASRSRIISATVFVRNAQTDGGAVAAEWELWLGGENHPAFACVEAGTAVPAQLVTIQVTAAM 616
IQRFE + VI G ++L A D AD + Q R L +IDA+L++ G+ R+R++SAT++V+ D A+ A W+ W+ + PA ACV+A A A LV I VTAA+
Sbjct: 2 IQRFETKARMSRAVIHNGTVYLCGQVAADADADISEQTRTTLAKIDALLESVGSDRTRLLSATIYVKTMD-DFAAMNAVWDAWVPEGHAPARACVQAAMARDALLVEITVTAAV 114
BLAST of jgi.p|Trimin1|348411 vs. uniprot
Match: A0A4P6F7M9_9MICO (RidA family protein n=1 Tax=Agromyces protaetiae TaxID=2509455 RepID=A0A4P6F7M9_9MICO) HSP 1 Score: 70.5 bits (171), Expect = 6.230e-12 Identity = 42/103 (40.78%), Postives = 64/103 (62.14%), Query Frame = 2
Query: 308 QGVITGGVLHLSAVAAKDLGADAAGQARQVLEQIDAVLQAKGASRSRIISATVFVRNAQTDGGAVAAEWELWLGGENHPAFACVEAGTAVPAQLVTIQVTAAM 616
Q V+ GG+ +L+ A GAD Q+R L Q+DA+L+A G +S++++AT+++ + T G + + W+ W+ GEN PA A VEA A P V QVTAA+
Sbjct: 14 QAVVHGGIAYLAGQVAA--GADVVEQSRAALAQVDALLEAAGTDKSKLLTATIYLADIATFGD-MNSVWDEWVDGENPPARATVEAKLATPEFFVEFQVTAAI 113
BLAST of jgi.p|Trimin1|348411 vs. uniprot
Match: A0A1H0GGX4_9HYPH (Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family n=1 Tax=Ensifer sp. YR511 TaxID=1855294 RepID=A0A1H0GGX4_9HYPH) HSP 1 Score: 69.3 bits (168), Expect = 1.730e-11 Identity = 48/113 (42.48%), Postives = 66/113 (58.41%), Query Frame = 2
Query: 281 IQRFEHAG-VQGVIT-GGVLHLSAVAAKDLGADAAGQARQVLEQIDAVLQAKGASRSRIISATVFVRNAQTDGGAVAAEWELWLGGENHPAFACVEAGTAVPAQLVTIQVTAA 613
I RFE + V+T GGV +L+ + A DL D AGQ RQVL + DA ++ +SR++SAT+++R+ +D A+ WE W+ N PA A EA A P LV I TAA
Sbjct: 2 IDRFEKGPRMSRVVTHGGVAYLAGITADDLSQDIAGQTRQVLAKADANMEKAKTDKSRLLSATIWLRDI-SDFDAMNVVWESWVDASNPPARATCEARLAKPQILVEITFTAA 113
BLAST of jgi.p|Trimin1|348411 vs. uniprot
Match: UPI0010C11760 (RidA family protein n=5 Tax=Roseomonas TaxID=125216 RepID=UPI0010C11760) HSP 1 Score: 68.6 bits (166), Expect = 3.510e-11 Identity = 40/93 (43.01%), Postives = 57/93 (61.29%), Query Frame = 2
Query: 332 LHLSAVAAKDLGADAAGQARQVLEQIDAVLQAKGASRSRIISATVFVRNAQTDGGAVAAEWELWLGGENHPAFACVEAGTAVPAQLVTIQVTA 610
++L+ + A DL D GQ +VL +IDA L+A G ++R+++AT++V++ D GA+ W WL PA ACVEA A P LV I VTA
Sbjct: 23 VYLAGMTADDLSKDIKGQTAEVLAKIDAALEANGTDKTRMLTATIWVKHI-ADRGAMNEVWTPWLPPGGAPARACVEANMADPRHLVEIMVTA 114
BLAST of jgi.p|Trimin1|348411 vs. uniprot
Match: UPI00200B8FAC (RidA family protein n=1 Tax=Roseomonas sp. NAR14 TaxID=2937791 RepID=UPI00200B8FAC) HSP 1 Score: 67.8 bits (164), Expect = 6.790e-11 Identity = 37/93 (39.78%), Postives = 58/93 (62.37%), Query Frame = 2
Query: 332 LHLSAVAAKDLGADAAGQARQVLEQIDAVLQAKGASRSRIISATVFVRNAQTDGGAVAAEWELWLGGENHPAFACVEAGTAVPAQLVTIQVTA 610
++L+ + A DL D +GQ +QVL++IDA L+A G +R++SA +++++ + D A+ W WL PA ACV+A A P LV I +TA
Sbjct: 23 VYLAGMTADDLSQDVSGQTKQVLDKIDAALEANGTDNTRLLSAQIWLKDIR-DRDAMNKLWTAWLPAGGAPARACVQANMADPRHLVEIMITA 114
BLAST of jgi.p|Trimin1|348411 vs. uniprot
Match: A0A1F4CVB5_9PROT (Uncharacterized protein (Fragment) n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_19 TaxID=1797504 RepID=A0A1F4CVB5_9PROT) HSP 1 Score: 67.4 bits (163), Expect = 7.950e-11 Identity = 40/95 (42.11%), Postives = 59/95 (62.11%), Query Frame = 2
Query: 314 VITGGVLHLSAVAAKDLGADAAGQARQVLEQIDAVLQAKGASRSRIISATVFVRNAQTDGGAVAAEWELWLGGENHPAFACVEAGTAVPAQLVTI 598
V+ G ++L+ V AK+L D GQAR++L +ID +L G+S+SR++SAT++V + + V W W+ +N PA ACVEA A P LV I
Sbjct: 16 VVHGDTVYLAGVVAKNLDNDIKGQAREILAEIDRLLAKCGSSKSRLLSATIWVTDIRNR-APVNEVWSAWVDPKNLPARACVEARLADPRSLVEI 109 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348411 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
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BLAST of jgi.p|Trimin1|348411 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_4994 ID=mRNA_4994|Name=jgi.p|Trimin1|348411|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=703bp|location=Sequence derived from alignment at Contig_23:1194918..1197245+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATCAAGGCTCCGGGAAGGGGAGGGCGTGGCGCTGGGGACAGCAAGGCCTCback to top protein sequence of jgi.p|Trimin1|348411 >Trimin1|348411|estExt_Genemark1.C_Ctg_230140 ID=Trimin1|348411|estExt_Genemark1.C_Ctg_230140|Name=jgi.p|Trimin1|348411|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=161bp MLAFTASWCKHCKVLAPIWQTVAEELDGQVSFASIDGWENRALSRRFHVAback to top mRNA from alignment at Contig_23:1194918..1197245+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_4994 ID=mRNA_4994|Name=jgi.p|Trimin1|348411|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2328bp|location=Sequence derived from alignment at Contig_23:1194918..1197245+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_23:1194918..1197245+ >mRNA_4994 ID=mRNA_4994|Name=jgi.p|Trimin1|348411|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=483bp|location=Sequence derived from alignment at Contig_23:1194918..1197245+ (Tribonema minus UTEX_B_3156 )back to top |