mRNA_4975 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|348400
Unique NamemRNA_4975
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348400 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_23contigContig_23:1053000..1054617 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|348400|estExt_Genemark1.C_Ctg_230116
Hectar predicted targeting categoryother localisation
TranscriptId348722
TrackFilteredModels1
ProteinId348400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348400gene_4975Tribonema minus UTEX_B_3156 geneContig_23 1053000..1054617 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4975_1exon_4975_1Tribonema minus UTEX_B_3156 exonContig_23 1053000..1053105 +
exon_4975_2exon_4975_2Tribonema minus UTEX_B_3156 exonContig_23 1053141..1053260 +
exon_4975_3exon_4975_3Tribonema minus UTEX_B_3156 exonContig_23 1054574..1054617 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4975CDS_4975Tribonema minus UTEX_B_3156 CDSContig_23 1053000..1053105 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348400Trimin1|348400|estExt_Genemark1.C_Ctg_230116Tribonema minus UTEX_B_3156 polypeptideContig_23 1053000..1054617 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4975 ID=mRNA_4975|Name=jgi.p|Trimin1|348400|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=270bp|location=Sequence derived from alignment at Contig_23:1053000..1054617+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGGAGGCGGCGGCGGCGGCGGCACGGACTGCACGGCTGCTGCAGC
GGTGGCGGCGGCGGCGGTGGCGGCAGCGCGGCACTGCCGCCGCCGCCGCG
TCGGTTCGGCGGCAGAGGCGGTGGCGTCCATTTATCCAGCAGCAGTGTTT
GCGTTGGAAGCGGGCGGCGCTGCATGCGCTGCCGCGGCGGCAGCGGCAGC
GGCGGCGGCGGCGGCAGCGCTGTCATGCCCGTCCAAGGGGGGGGGCTACC
CCCCTCAATTCCTCAAGTGA
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protein sequence of jgi.p|Trimin1|348400

>Trimin1|348400|estExt_Genemark1.C_Ctg_230116 ID=Trimin1|348400|estExt_Genemark1.C_Ctg_230116|Name=jgi.p|Trimin1|348400|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=90bp
MSGGGGGGGTDCTAAAAVAAAAVAAARHCRRRRVGSAAEAVASIYPAAVF
ALEAGGAACAAAAAAAAAAAAAALSCPSKGGGYPPQFLK*
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mRNA from alignment at Contig_23:1053000..1054617+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4975 ID=mRNA_4975|Name=jgi.p|Trimin1|348400|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1618bp|location=Sequence derived from alignment at Contig_23:1053000..1054617+ (Tribonema minus UTEX_B_3156 )
ATGAGCGGAGGCGGCGGCGGCGGCGGCACGGACTGCACGGCTGCTGCAGC
GGTGGCGGCGGCGGCGGTGGCGGCAGCGCGGCACTGCCGCCGCCGCCGCG
TCGGTTGTGCGCTGTCGCAGCTGCTTGCAGCGCTGCGCCAGCGGCGGCAG
AGGCGGTGGCGTCCATTTATCCAGCAGCAGTGTTTGCGTTGGAAGCGGGC
GGCGCTGCATGCGCTGCCGCGGCGGCAGCGGCAGCGGCGGCGGCGGCGGC
AGCGCTGTCATGTGCAGCAGCAGCAGCACATGCAGCAATGACGGCGGCCT
TTGTCCTACCCTGCTCCACTTGTTACTTGCCATTTAGACGGGCGCGAAGG
AGGGGGGAGGGGGGGGGCGGGCGCCATACCTGCTAGAGAGGAAGCGCGCA
CGTCTCTTGAGGAGCGTCCCACGCTATCCACCGCCGCCTTTTTTGAATGC
TACATTGCAGCAGCAGCATCATATTCGCCCAGCGCATCTTGTGGCGCCAT
CTTTGTTTTTTCGACGATATAGCATTGCTGTCTCAGCCTGTCTGTGTTGC
ATTCCTGGATGCAACGTCCAGTCACACGAGCGCTGGCTGCTCTGACGCCA
GGTGTTGGCGGTTTCAGCCGCAGATTGGGGCCACTAGTAATCAGCAGGGC
ACAGCTACTGTAGCTGGAGTTGCTGAACTCCCTATGATGTGTCAATATGC
AGAGGTCTAGATTATGTGTCAACAGACGGGCAGTTGCAGAGCTTGCGCTT
CCCCATACGACACTGAGGAGGCCCTGATATAACAGGTCAAGTGGTGGCAT
GCGCAAACGCAACGCGGTGCTTAGATGCATGCATCTACGGTGCGCTTGAA
AGTCAGCATGCGTCTGTGCTCTGCATCACGTCCCATGAGCCAATGTGTGT
GTGTACACATTCATGCCCTCTAGGGAAATGTAGTGTTTCGGCCTGTTGTG
TTGGCTCTGATTTCTCATTTCTGTGCATGGAAAAATGGGGCCCAAAGCCG
AGTGCTCTGCCCCCGACAATCATCACATACTGGTACACAACCAGTTCATG
CAGGCGCAACAACAAAAGGCACCTCAAAGTGGCAGTGGCCCCTGCCCTGA
CGCGAGAAACACATTTCTACAGAAAGACTGGCTTGTAAAAAGGCCCCATG
AAAGCGCATGATCGCAAGTTCAGCAATTGCACACTGTGTGTCAGCAATTG
AGCTCTGTCAAAGACTATACTTTTTTGAAGTAACAAAAACCAGTTTGCTT
CAATTTCACATCACAGCAGTAATTCACAAGGCCACACACACAAGGCAAGC
AGCATAGTTGACAAGCGCAGCAGCGGCATTGAGACACCAGAGCACGAGCT
CATTGATGCGTGTGCTTGAAGTTCCGATGATTAATGCGGGCAGTCAGCAA
CAGGAGGGGGAAAGACTCGGCCATGACGAACGCAACTAGCAAGGGAGCCA
TAATCATGAGCCGCACACTCAGGCTCAGGCTGCTGACCACAGCTGCACAG
AGACAACATGGTGCCCTCTTTGTGCGTCATGTCAGCTGCCTTTGTTCGCA
ATGTCAGCTGCTGCCTTCTCGCAGGCCCGTCCAAGGGGGGGGGCTACCCC
CCTCAATTCCTCAAGTGA
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Coding sequence (CDS) from alignment at Contig_23:1053000..1054617+

>mRNA_4975 ID=mRNA_4975|Name=jgi.p|Trimin1|348400|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=270bp|location=Sequence derived from alignment at Contig_23:1053000..1054617+ (Tribonema minus UTEX_B_3156 )
ATGAGCGGAGGCGGCGGCGGCGGCGGCACGGACTGCACGGCTGCTGCAGC
GGTGGCGGCGGCGGCGGTGGCGGCAGCGCGGCACTGCCGCCGCCGCCGCG
TCGGTTCGGCGGCAGAGGCGGTGGCGTCCATTTATCCAGCAGCAGTGTTT
GCGTTGGAAGCGGGCGGCGCTGCATGCGCTGCCGCGGCGGCAGCGGCAGC
GGCGGCGGCGGCGGCAGCGCTGTCATGCCCGTCCAAGGGGGGGGGCTACC
CCCCTCAATTCCTCAAGTGA
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