mRNA_4871 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|348347
Unique NamemRNA_4871
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|348347 vs. uniprot
Match: A0A835Z275_9STRA (Ubiquitin-conjugating enzyme/RWD-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z275_9STRA)

HSP 1 Score: 402 bits (1034), Expect = 1.010e-139
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 2
Query:   80 MSDMSARRLRHEAMALQKNPVENIQALPLETNILEWHYVITGTKGTPFEGGYYHGLLRFPAEYPLKPPSILMYTPNGRFATNRRLCLSNSDFHPESWNPVWGVSTILMGLYSFMLDTAPTLGSVTTSAAAKRKFAEESLAFNVRDKNFCALFPELADLHVALELQKQLEPRAAKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRAEEPGGLTVFVCLIVIMGVLAVILRLG 778
            MSDMSARRLRHEAMALQKNPVENIQALPLETNILEWHYVITGTKGTPFEGGYYHGLLRFPAEYPLKPPSILMYTPNGRFATNRRLCLSNSDFHPESWNPVWGVSTILMGLYSFMLDTAPTLGSVTTSAAAKRKFAEESLAFNVRDKNFCALFPELADLHVALELQKQLEPRAAKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRAEEPGGLTVFVCLIVIMGVLAVILRLG
Sbjct:    1 MSDMSARRLRHEAMALQKNPVENIQALPLETNILEWHYVITGTKGTPFEGGYYHGLLRFPAEYPLKPPSILMYTPNGRFATNRRLCLSNSDFHPESWNPVWGVSTILMGLYSFMLDTAPTLGSVTTSAAAKRKFAEESLAFNVRDKNFCALFPELADLHVALELQKQLEPRAAKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRAEEPGGLTVFVCLIVIMGVLAVILRLG 233          
BLAST of jgi.p|Trimin1|348347 vs. uniprot
Match: A0A6H5JE14_9PHAE (UBC core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JE14_9PHAE)

HSP 1 Score: 242 bits (618), Expect = 3.990e-76
Identity = 108/160 (67.50%), Postives = 135/160 (84.38%), Query Frame = 2
Query:   77 VMSDMSARRLRHEAMALQKNPVENIQALPLETNILEWHYVITGTKGTPFEGGYYHGLLRFPAEYPLKPPSILMYTPNGRFATNRRLCLSNSDFHPESWNPVWGVSTILMGLYSFMLDTAPTLGSVTTSAAAKRKFAEESLAFNVRDKNFCALFPELADLH 556
            + SDM+ +RLR E MA+++NP++NI A+P++ NILEWHYVITGTKG+P+EGG+YHG L+FP EYP+KPPS++M TPNGRFA +RRLCLS SDFHPESWNPVW VSTILMGLYSFMLD A TLGS+T+S A K++FA ESL  N ++  F  LFP+L +LH
Sbjct:    1 MASDMATKRLRKELMAIKRNPIDNIVAMPMDNNILEWHYVITGTKGSPYEGGHYHGKLKFPPEYPMKPPSVMMMTPNGRFACSRRLCLSMSDFHPESWNPVWSVSTILMGLYSFMLDNAATLGSITSSTAQKKRFATESLEVNCKNPAFRKLFPDLVELH 160          
BLAST of jgi.p|Trimin1|348347 vs. uniprot
Match: A0A7R9W6X2_9STRA (Hypothetical protein n=2 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W6X2_9STRA)

HSP 1 Score: 241 bits (614), Expect = 5.160e-76
Identity = 117/174 (67.24%), Postives = 136/174 (78.16%), Query Frame = 2
Query:   77 VMSDMSARRLRHEAMALQKNPVEN--IQALPLETNILEWHYVITGTKGTPFEGGYYHGLLRFPAEYPLKPPSILMYTPNGRFATNRRLCLSNSDFHPESWNPVWGVSTILMGLYSFMLDTAPTLGSVTTSAAAKRKFAEESLAFNVRDKNFCALFPELADLHVALELQKQLEPR 592
            + +DM  RRL  E  +LQKNP+ N  I A P E+NILEWHYVI G+KGTP+EGG+YHG L FP EYPLKPPS++M TP+GRF  NRRLCLS SDFHPESWNP+W VSTIL GLYSFM++TAPTLGS+ TS A KRK A +SL FNVRD NFC LFP+ ADLH     +K+LE R
Sbjct:    1 MANDMCTRRLTRELQSLQKNPLLNPRIVATPHESNILEWHYVIEGSKGTPYEGGHYHGKLVFPKEYPLKPPSVIMLTPSGRFKPNRRLCLSMSDFHPESWNPMWSVSTILTGLYSFMVETAPTLGSIETSEAQKRKLARQSLDFNVRDSNFCTLFPDYADLH-----KKRLEER 169          
BLAST of jgi.p|Trimin1|348347 vs. uniprot
Match: A0A7S2H9E8_9STRA (Hypothetical protein n=2 Tax=Lithodesmiaceae TaxID=49247 RepID=A0A7S2H9E8_9STRA)

HSP 1 Score: 234 bits (598), Expect = 1.080e-73
Identity = 110/162 (67.90%), Postives = 129/162 (79.63%), Query Frame = 2
Query:   77 VMSDMSARRLRHEAMALQKNPVEN--IQALPLETNILEWHYVITGTKGTPFEGGYYHGLLRFPAEYPLKPPSILMYTPNGRFATNRRLCLSNSDFHPESWNPVWGVSTILMGLYSFMLDTAPTLGSVTTSAAAKRKFAEESLAFNVRDKNFCALFPELADLH 556
            + +DM  RRL  E  +LQKNP+ +  I A+P E NILEWHYVI G  GTP+EGG+YHG L FP EYPLKPPS++M TP+GRF  NRRLCLS SDFHPESWNP+W VSTIL GLYSFM++TAPTLGS+ TS A KRKFA +SL FNVRD+ FC LFP+L +LH
Sbjct:    1 MANDMCVRRLTRELQSLQKNPLHSPRIVAMPNEENILEWHYVIEGNTGTPYEGGHYHGKLIFPKEYPLKPPSVIMLTPSGRFKPNRRLCLSMSDFHPESWNPMWSVSTILTGLYSFMVETAPTLGSIETSTAQKRKFARQSLDFNVRDQMFCKLFPDLVELH 162          
BLAST of jgi.p|Trimin1|348347 vs. uniprot
Match: A0A8K1FI92_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FI92_PYTOL)

HSP 1 Score: 228 bits (581), Expect = 6.120e-72
Identity = 106/160 (66.25%), Postives = 124/160 (77.50%), Query Frame = 2
Query:   77 VMSDMSARRLRHEAMALQKNPVENIQALPLETNILEWHYVITGTKGTPFEGGYYHGLLRFPAEYPLKPPSILMYTPNGRFATNRRLCLSNSDFHPESWNPVWGVSTILMGLYSFMLDTAPTLGSVTTSAAAKRKFAEESLAFNVRDKNFCALFPELADLH 556
            + S M+  RLR E +ALQK PVENI+A PLE NILEWHYVITGT  TP+EGGYYHG LRFP EYP+KPPS+LM TPNGRF  NRR+CLS SDFHPE+WNP+W V +IL GLYSFML+   T G + TS   KR+FA+ SLA N +DK F  LFP+L +LH
Sbjct:    1 MASSMATSRLRKEYIALQKKPVENIRAAPLEKNILEWHYVITGTADTPYEGGYYHGKLRFPPEYPMKPPSVLMLTPNGRFEVNRRICLSMSDFHPETWNPLWSVGSILTGLYSFMLENEITTGGIETSDDEKREFAQASLATNCQDKTFQTLFPDLVELH 160          
BLAST of jgi.p|Trimin1|348347 vs. uniprot
Match: A0A8K1FJB7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FJB7_PYTOL)

HSP 1 Score: 229 bits (584), Expect = 1.160e-71
Identity = 105/160 (65.62%), Postives = 127/160 (79.38%), Query Frame = 2
Query:   77 VMSDMSARRLRHEAMALQKNPVENIQALPLETNILEWHYVITGTKGTPFEGGYYHGLLRFPAEYPLKPPSILMYTPNGRFATNRRLCLSNSDFHPESWNPVWGVSTILMGLYSFMLDTAPTLGSVTTSAAAKRKFAEESLAFNVRDKNFCALFPELADLH 556
            + S M+ +RLR E +A+Q+ PVENIQALPLE+NILEWHYVI GT GTP+EGGYYHG L+FP EYP+KPPS++M TPNGRF TN+RLCLS SDFHPE+WNP+W VS+IL GLYSFM++   T GS+ T+ A KRK A ESL  N  +  F  LFPEL +LH
Sbjct:    1 MASAMATKRLRKEYLAIQRKPVENIQALPLESNILEWHYVIQGTSGTPYEGGYYHGCLKFPPEYPMKPPSVMMMTPNGRFKTNQRLCLSMSDFHPETWNPMWSVSSILTGLYSFMIENQSTYGSIKTTDAQKRKHAAESLEVNCNNALFRKLFPELVELH 160          
BLAST of jgi.p|Trimin1|348347 vs. uniprot
Match: A0A7S2A1W1_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A1W1_TRICV)

HSP 1 Score: 229 bits (583), Expect = 2.350e-71
Identity = 114/174 (65.52%), Postives = 132/174 (75.86%), Query Frame = 2
Query:   77 VMSDMSARRLRHEAMALQKNPVEN--IQALPLETNILEWHYVITGTKGTPFEGGYYHGLLRFPAEYPLKPPSILMYTPNGRFATNRRLCLSNSDFHPESWNPVWGVSTILMGLYSFMLDTAPTLGSVTTSAAAKRKFAEESLAFNVRDKNFCALFPELADLHVALELQKQLEPR 592
            + SDM  RRL  E  ALQKNP+ N  I A+P ETNILEWHYV+ GT   P+EGG+YHG L FP EYPLKPPS++M TP+GRF  NRRLCLS SDFHPESWNP+W VSTIL GLYSFM++TAPTLGS+ TS   KRK A +SL FNVRD NFC LFP+  +LH     +K+LE R
Sbjct:    1 MASDMCTRRLTRELRALQKNPLMNPRIVAVPNETNILEWHYVLEGTG--PYEGGHYHGKLIFPKEYPLKPPSVIMLTPSGRFKPNRRLCLSMSDFHPESWNPMWSVSTILTGLYSFMVETAPTLGSIETSDGQKRKLARQSLDFNVRDSNFCKLFPDYVELH-----KKRLEER 167          
BLAST of jgi.p|Trimin1|348347 vs. uniprot
Match: A0A3F2RXI9_9STRA (UBC core domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RXI9_9STRA)

HSP 1 Score: 228 bits (582), Expect = 3.120e-71
Identity = 105/169 (62.13%), Postives = 134/169 (79.29%), Query Frame = 2
Query:   77 VMSDMSARRLRHEAMALQKNPVENIQALPLETNILEWHYVITGTKGTPFEGGYYHGLLRFPAEYPLKPPSILMYTPNGRFATNRRLCLSNSDFHPESWNPVWGVSTILMGLYSFMLDTAPTLGSVTTSAAAKRKFAEESLAFNVRDKNFCALFPELADLHVALELQKQL 583
            + S M+ +RLR E +A+Q+ PV+ IQA+P+ETNILEWHYVITGTKGTP+EGGYYHG L+FP EYP+KPPS++M TPNGRF TN+RLCLS SDFHPE+WNP+W VS+IL GLYSFML+T  TLGS++T+ A KRK+A  SL  N  +  F  LFP+L  L    + +++L
Sbjct:    1 MASVMATKRLRKEYLAMQRKPVDYIQAVPVETNILEWHYVITGTKGTPYEGGYYHGKLKFPPEYPMKPPSVMMTTPNGRFKTNQRLCLSMSDFHPETWNPMWSVSSILTGLYSFMLETQATLGSISTTDAQKRKYAAASLEANCTNATFRKLFPDLVTLQEQRDKEQEL 169          
BLAST of jgi.p|Trimin1|348347 vs. uniprot
Match: K3WBL8_GLOUD (UBC core domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WBL8_GLOUD)

HSP 1 Score: 226 bits (575), Expect = 6.040e-71
Identity = 104/160 (65.00%), Postives = 123/160 (76.88%), Query Frame = 2
Query:   77 VMSDMSARRLRHEAMALQKNPVENIQALPLETNILEWHYVITGTKGTPFEGGYYHGLLRFPAEYPLKPPSILMYTPNGRFATNRRLCLSNSDFHPESWNPVWGVSTILMGLYSFMLDTAPTLGSVTTSAAAKRKFAEESLAFNVRDKNFCALFPELADLH 556
            + S M+  RLR E + LQ+ PV+NIQA P E NILEWHYVITGT  +P+EGGYYHG LRFP EYP+KPP++LM TPNGRF  NRR+CLS SDFHPE+WNPVW V +IL GLYSFML+   T GS+ T+   KRKFA ESLA N  +K+FC LFP L +LH
Sbjct:    1 MASAMATNRLRKEYVNLQRKPVDNIQAAPQEKNILEWHYVITGTPDSPYEGGYYHGKLRFPPEYPMKPPAVLMLTPNGRFEVNRRICLSMSDFHPETWNPVWAVGSILTGLYSFMLEDQITTGSIETTDEEKRKFAAESLAVNCTNKDFCTLFPHLVELH 160          
BLAST of jgi.p|Trimin1|348347 vs. uniprot
Match: H3GEL5_PHYRM (UBC core domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GEL5_PHYRM)

HSP 1 Score: 226 bits (575), Expect = 9.610e-71
Identity = 103/162 (63.58%), Postives = 129/162 (79.63%), Query Frame = 2
Query:   77 VMSDMSARRLRHEAMALQKNPVENIQALPLETNILEWHYVITGTKGTPFEGGYYHGLLRFPAEYPLKPPSILMYTPNGRFATNRRLCLSNSDFHPESWNPVWGVSTILMGLYSFMLDTAPTLGSVTTSAAAKRKFAEESLAFNVRDKNFCALFPELADLHVA 562
            + S M+ +RLR E +ALQKNPVENI+A PLE NILEWHYVI+GT+GTP+EGG+YHG L+FP+EYP+KPP+++M TPNGRF TNRR+CLS SDFHPE+WNP+W V +IL GLYSFML+   T GS+ T+   KR +A  SL +N +DKNF  LF EL +L  A
Sbjct:    1 MASAMATKRLRKEYLALQKNPVENIRAAPLEKNILEWHYVISGTEGTPYEGGFYHGKLKFPSEYPMKPPAVIMCTPNGRFETNRRICLSMSDFHPETWNPLWAVGSILTGLYSFMLEDKITTGSIETTEEDKRTYATVSLEYNCKDKNFRGLFTELVELQNA 162          
BLAST of jgi.p|Trimin1|348347 vs. uniprot
Match: A0A835ZBQ0_9STRA (WW domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBQ0_9STRA)

HSP 1 Score: 2168 bits (5617), Expect = 0.000e+0
Identity = 1243/1243 (100.00%), Postives = 1243/1243 (100.00%), Query Frame = 1
Query:    1 MSDSEAIAVGKALRAVDERSLEAWLHWVRQGGTAVCSDIWREAWDSFRPRTNADLTFGPNDPAHNEVVFLRDAGSGSAANEAQALAVQVPVVELGADGLPAVQSETGDVAAARTVAAALRESDVLRLGKCRVTGDAVVGSGGARAPPLWLRVAVVSVREECVVLARRCGEWGAPLAECDSAHGGLLEVPLARLAGAVVLRERGDSRSAAAAPPLPPPDFRTAAAAGCTVVAFALPLPSAEWGLAWLRAAAAEDCRLGGADSLAARAEGGALSAAAALQAEAARERXXXRDRALRDRADARVREARALLPRLSPARALRRDAWAAVGRALFAAEGGRRGRGALRAEWARWTEAAAAAVEAGQQFSAEGQRAXXXXXXQQRAGLPARPXXXXXXXXXXXXGGAAGAVAAADDCRAAWLRFRPRTSLDAPALVNLRAWVQSSRRPRPRAAPWRSGAGSSSVCDTFSDCMRANASDAAAAKLAEFSGAHLKGDSNRLAGGAPTATLSSALRGDALARAKQMVKELPERTRTVLQFLEPSSEPLQVPAVSMVRTPLSGPPAGPPSGFLMGEGLFPLPPGKGIGGXXXXXXXXGDRRGQKGLTLVPRDVVAEVRPGDWLLVTSGTGGYKGVWRQVVGLSVLQPAVMVRARGSRAYGAQSDGSPWQLPRRRTEAARGSAAXXXXXXXXXXXXXXXXXDARRARSGSDAWRPLRVGLEELWGAWVFRDDEPCASQDFNTDAPGARWSEPPPPRTGCVGLAFQLPVPDAAGAVDELRRWARSDAAEPEHTPRTTASGGDGISASRVPSDSKIQHNSAQHRDANSYLPSNTRRSXXXXXXXXXXXXXXXXXRALLLPAPMLRALERGVARLLVAWSGAGEARVELLSTEPPRADAGSSAAAAAAPLRSAWRAVYAGAAGACEVTGLRQCSTYTLRVRAAGRRVALLRACTLAAAPPRAPLLARWLPRGGGGAHERVAVIEMGCDCAAAAGRWVLRRRRLPMLSADLAADQQTALATARQWSAIGGDTSADAGPEASVNAAGGRVFEVYRGRKGEAAVGGLEGYRGGWSPALPVTVPQQLRARQSHPPSRAQHTSGRSGSAAEADGDAQAVVRALGPRLSAAQQRRVTAAFARVLRSGGASSSGSDCSAGSRLRSSSSSTERGSGSGXXXXXXXXXXXXXXXXGASGKRDARQNSRKGRLPRGWRRVHDGAGGAAFYVNDGAGVAQWTRPQAWQEEAVALDLGDAAAAMRFEHD 3729
            MSDSEAIAVGKALRAVDERSLEAWLHWVRQGGTAVCSDIWREAWDSFRPRTNADLTFGPNDPAHNEVVFLRDAGSGSAANEAQALAVQVPVVELGADGLPAVQSETGDVAAARTVAAALRESDVLRLGKCRVTGDAVVGSGGARAPPLWLRVAVVSVREECVVLARRCGEWGAPLAECDSAHGGLLEVPLARLAGAVVLRERGDSRSAAAAPPLPPPDFRTAAAAGCTVVAFALPLPSAEWGLAWLRAAAAEDCRLGGADSLAARAEGGALSAAAALQAEAARERXXXRDRALRDRADARVREARALLPRLSPARALRRDAWAAVGRALFAAEGGRRGRGALRAEWARWTEAAAAAVEAGQQFSAEGQRAXXXXXXQQRAGLPARPXXXXXXXXXXXXGGAAGAVAAADDCRAAWLRFRPRTSLDAPALVNLRAWVQSSRRPRPRAAPWRSGAGSSSVCDTFSDCMRANASDAAAAKLAEFSGAHLKGDSNRLAGGAPTATLSSALRGDALARAKQMVKELPERTRTVLQFLEPSSEPLQVPAVSMVRTPLSGPPAGPPSGFLMGEGLFPLPPGKGIGGXXXXXXXXGDRRGQKGLTLVPRDVVAEVRPGDWLLVTSGTGGYKGVWRQVVGLSVLQPAVMVRARGSRAYGAQSDGSPWQLPRRRTEAARGSAAXXXXXXXXXXXXXXXXXDARRARSGSDAWRPLRVGLEELWGAWVFRDDEPCASQDFNTDAPGARWSEPPPPRTGCVGLAFQLPVPDAAGAVDELRRWARSDAAEPEHTPRTTASGGDGISASRVPSDSKIQHNSAQHRDANSYLPSNTRRSXXXXXXXXXXXXXXXXXRALLLPAPMLRALERGVARLLVAWSGAGEARVELLSTEPPRADAGSSAAAAAAPLRSAWRAVYAGAAGACEVTGLRQCSTYTLRVRAAGRRVALLRACTLAAAPPRAPLLARWLPRGGGGAHERVAVIEMGCDCAAAAGRWVLRRRRLPMLSADLAADQQTALATARQWSAIGGDTSADAGPEASVNAAGGRVFEVYRGRKGEAAVGGLEGYRGGWSPALPVTVPQQLRARQSHPPSRAQHTSGRSGSAAEADGDAQAVVRALGPRLSAAQQRRVTAAFARVLRSGGASSSGSDCSAGSRLRSSSSSTERGSGSGXXXXXXXXXXXXXXXXGASGKRDARQNSRKGRLPRGWRRVHDGAGGAAFYVNDGAGVAQWTRPQAWQEEAVALDLGDAAAAMRFEHD
Sbjct:    1 MSDSEAIAVGKALRAVDERSLEAWLHWVRQGGTAVCSDIWREAWDSFRPRTNADLTFGPNDPAHNEVVFLRDAGSGSAANEAQALAVQVPVVELGADGLPAVQSETGDVAAARTVAAALRESDVLRLGKCRVTGDAVVGSGGARAPPLWLRVAVVSVREECVVLARRCGEWGAPLAECDSAHGGLLEVPLARLAGAVVLRERGDSRSAAAAPPLPPPDFRTAAAAGCTVVAFALPLPSAEWGLAWLRAAAAEDCRLGGADSLAARAEGGALSAAAALQAEAARERXXXRDRALRDRADARVREARALLPRLSPARALRRDAWAAVGRALFAAEGGRRGRGALRAEWARWTEAAAAAVEAGQQFSAEGQRAXXXXXXQQRAGLPARPXXXXXXXXXXXXGGAAGAVAAADDCRAAWLRFRPRTSLDAPALVNLRAWVQSSRRPRPRAAPWRSGAGSSSVCDTFSDCMRANASDAAAAKLAEFSGAHLKGDSNRLAGGAPTATLSSALRGDALARAKQMVKELPERTRTVLQFLEPSSEPLQVPAVSMVRTPLSGPPAGPPSGFLMGEGLFPLPPGKGIGGXXXXXXXXGDRRGQKGLTLVPRDVVAEVRPGDWLLVTSGTGGYKGVWRQVVGLSVLQPAVMVRARGSRAYGAQSDGSPWQLPRRRTEAARGSAAXXXXXXXXXXXXXXXXXDARRARSGSDAWRPLRVGLEELWGAWVFRDDEPCASQDFNTDAPGARWSEPPPPRTGCVGLAFQLPVPDAAGAVDELRRWARSDAAEPEHTPRTTASGGDGISASRVPSDSKIQHNSAQHRDANSYLPSNTRRSXXXXXXXXXXXXXXXXXRALLLPAPMLRALERGVARLLVAWSGAGEARVELLSTEPPRADAGSSAAAAAAPLRSAWRAVYAGAAGACEVTGLRQCSTYTLRVRAAGRRVALLRACTLAAAPPRAPLLARWLPRGGGGAHERVAVIEMGCDCAAAAGRWVLRRRRLPMLSADLAADQQTALATARQWSAIGGDTSADAGPEASVNAAGGRVFEVYRGRKGEAAVGGLEGYRGGWSPALPVTVPQQLRARQSHPPSRAQHTSGRSGSAAEADGDAQAVVRALGPRLSAAQQRRVTAAFARVLRSGGASSSGSDCSAGSRLRSSSSSTERGSGSGXXXXXXXXXXXXXXXXGASGKRDARQNSRKGRLPRGWRRVHDGAGGAAFYVNDGAGVAQWTRPQAWQEEAVALDLGDAAAAMRFEHD 1243          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348347 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z275_9STRA1.010e-139100.00Ubiquitin-conjugating enzyme/RWD-like protein n=1 ... [more]
A0A6H5JE14_9PHAE3.990e-7667.50UBC core domain-containing protein n=2 Tax=Ectocar... [more]
A0A7R9W6X2_9STRA5.160e-7667.24Hypothetical protein n=2 Tax=Pseudictyota dubia Ta... [more]
A0A7S2H9E8_9STRA1.080e-7367.90Hypothetical protein n=2 Tax=Lithodesmiaceae TaxID... [more]
A0A8K1FI92_PYTOL6.120e-7266.25Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A8K1FJB7_PYTOL1.160e-7165.63Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2A1W1_TRICV2.350e-7165.52Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A3F2RXI9_9STRA3.120e-7162.13UBC core domain-containing protein n=3 Tax=Phytoph... [more]
K3WBL8_GLOUD6.040e-7165.00UBC core domain-containing protein n=1 Tax=Globisp... [more]
H3GEL5_PHYRM9.610e-7163.58UBC core domain-containing protein n=1 Tax=Phytoph... [more]

Pages

back to top
BLAST of jgi.p|Trimin1|348347 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZBQ0_9STRA0.000e+0100.00WW domain-containing protein n=1 Tax=Tribonema min... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_23contigContig_23:259135..260504 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|348347|estExt_Genemark1.C_Ctg_230022
BRITEko00000,ko00001,ko01000,ko04121
KEGG Pathwayko04120,ko04141,ko05012,map04120,map04141,map05012
KEGG koko:K04554
EC2.3.2.23
Descriptionubiquitin-dependent ERAD pathway
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG0894@1|root,KOG0894@2759|Eukaryota
Evalue6.42e-77
Seed ortholog2880.D7G983
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPutative ubiquitin-conjugating enzyme E2
Ec32 orthologEc-13_002970.1
TranscriptId348669
TrackFilteredModels1
ProteinId348347
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348347gene_4871Tribonema minus UTEX_B_3156 geneContig_23 259135..260504 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4871_1exon_4871_1Tribonema minus UTEX_B_3156 exonContig_23 259135..259315 +
exon_4871_2exon_4871_2Tribonema minus UTEX_B_3156 exonContig_23 259776..260504 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_4871UTR5_4871Tribonema minus UTEX_B_3156 five_prime_UTRContig_23 259135..259213 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4871CDS_4871Tribonema minus UTEX_B_3156 CDSContig_23 259214..259315 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_4871UTR3_4871Tribonema minus UTEX_B_3156 three_prime_UTRContig_23 260376..260504 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348347Trimin1|348347|estExt_Genemark1.C_Ctg_230022Tribonema minus UTEX_B_3156 polypeptideContig_23 259214..260375 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4871 ID=mRNA_4871|Name=jgi.p|Trimin1|348347|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=910bp|location=Sequence derived from alignment at Contig_23:259135..260504+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AGAAGGCATCGGAAAGGAGGAGCAGCAGGGGAGAGACATCGCTGACGGCC
TCCTGGGCCATCTTCCGCTCCGGCGAGTCATGAGCGATATGAGCGCACGG
CGACTGCGGCACGAGGCCATGGCTCTACAAAAAAATCCTGTCGAAAACAT
ACAGGCGCTCCCACTAGAGACCAATATACTGGAGTGGCACTACGTGATCA
CGGGAACGAAAGGGACGCCATTCGAGGGCGGCTACTACCACGGCCTCCTG
CGCTTCCCCGCAGAGTACCCGCTGAAACCGCCATCCATACTCATGTACAC
GCCGAACGGGCGCTTCGCGACGAACCGCCGCCTCTGCCTGAGCAACAGCG
ACTTCCACCCGGAGTCGTGGAACCCGGTGTGGGGCGTGAGCACGATACTC
ATGGGACTCTACTCGTTCATGCTCGACACGGCGCCGACGCTCGGGTCCGT
CACCACGTCCGCCGCCGCCAAGCGCAAGTTCGCGGAGGAGTCGCTCGCGT
TCAACGTGCGCGACAAGAACTTCTGCGCGCTGTTCCCGGAACTCGCCGAC
CTCCACGTCGCGCTCGAGCTGCAGAAGCAGCTGGAGCCCAGGGCGGCAAA
GAAAGCGGCGGCGAACGGCAGCGGCGGCGGTGGCGGCGGCGCGGCGGCGG
GCGGCGGCGGCGCAGGGGCGACGGCGGCGACAGCAGCAGCGCCAAGAGCG
GAGGAGCCGGGCGGGCTCACTGTTTTTGTGTGCCTCATAGTTATCATGGG
GGTGCTGGCGGTGATCCTGCGGCTGGGCTAAGGCCCGAGGCTGGCGGCAG
TTGTTTGAGTGTGCAAATATATTACGCCGGCGCGGCAGGGGGAGCTGAAG
GTGCGACGGGGGACAGTCGGCACAGTGGGGGAGGGGGGGGGGGGGGGGCG
CTATCCTGTG
back to top

protein sequence of jgi.p|Trimin1|348347

>Trimin1|348347|estExt_Genemark1.C_Ctg_230022 ID=Trimin1|348347|estExt_Genemark1.C_Ctg_230022|Name=jgi.p|Trimin1|348347|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=234bp
MSDMSARRLRHEAMALQKNPVENIQALPLETNILEWHYVITGTKGTPFEG
GYYHGLLRFPAEYPLKPPSILMYTPNGRFATNRRLCLSNSDFHPESWNPV
WGVSTILMGLYSFMLDTAPTLGSVTTSAAAKRKFAEESLAFNVRDKNFCA
LFPELADLHVALELQKQLEPRAAKKAAANGSGGGGGGAAAGGGGAGATAA
TAAAPRAEEPGGLTVFVCLIVIMGVLAVILRLG*
back to top

mRNA from alignment at Contig_23:259135..260504+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4871 ID=mRNA_4871|Name=jgi.p|Trimin1|348347|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1370bp|location=Sequence derived from alignment at Contig_23:259135..260504+ (Tribonema minus UTEX_B_3156 )
AGAAGGCATCGGAAAGGAGGAGCAGCAGGGGAGAGACATCGCTGACGGCC TCCTGGGCCATCTTCCGCTCCGGCGAGTCATGAGCGATATGAGCGCACGG CGACTGCGGCACGAGGCCATGGCTCTACAAAAAAATCCTGTCGAAAACAT ACAGGCGCTCCCACTAGAGACCAATATACTGGTGAGTCATGTCGCTTGCT TTGTGATTTAGCGTCTCAAAACAGACCTCCTGTCGCCGCCGTGTCCGCTC CACATGACAGCGGCTAGAGTTGTGTGCAGGATTTACTGCTGACATGCCTA GCTGAGAGCCGGCGGCATGTTAGCTCCCGCGACATAACGTTGTGCGCATT GCATGTTGTCAGTTATGCTACCTCTGCGTAGCAGTCCCTTGTAGACGACA CGCCTGCAGTTCCCTTGGTTTCAAATCTCATCAGTTGTGTGTCAACCACT GTGACAGGGCATCGGAAAGCGTTGCCGCGCTGCCCGCAGCAGCGCCTCTC ATCTGGCGGAAATGTGGACATGATTATTGAATATGACCTGGTGCTGCATT CTTCGTCACCATGATGACATGCTTATTTCATGCATATATTCCTGGTGCCG ACACGAGCCGCGACTTGTATCACCTTGTCACATGTCCACAGGAGTGGCAC TACGTGATCACGGGAACGAAAGGGACGCCATTCGAGGGCGGCTACTACCA CGGCCTCCTGCGCTTCCCCGCAGAGTACCCGCTGAAACCGCCATCCATAC TCATGTACACGCCGAACGGGCGCTTCGCGACGAACCGCCGCCTCTGCCTG AGCAACAGCGACTTCCACCCGGAGTCGTGGAACCCGGTGTGGGGCGTGAG CACGATACTCATGGGACTCTACTCGTTCATGCTCGACACGGCGCCGACGC TCGGGTCCGTCACCACGTCCGCCGCCGCCAAGCGCAAGTTCGCGGAGGAG TCGCTCGCGTTCAACGTGCGCGACAAGAACTTCTGCGCGCTGTTCCCGGA ACTCGCCGACCTCCACGTCGCGCTCGAGCTGCAGAAGCAGCTGGAGCCCA GGGCGGCAAAGAAAGCGGCGGCGAACGGCAGCGGCGGCGGTGGCGGCGGC GCGGCGGCGGGCGGCGGCGGCGCAGGGGCGACGGCGGCGACAGCAGCAGC GCCAAGAGCGGAGGAGCCGGGCGGGCTCACTGTTTTTGTGTGCCTCATAG TTATCATGGGGGTGCTGGCGGTGATCCTGCGGCTGGGCTAAGGCCCGAGG CTGGCGGCAGTTGTTTGAGTGTGCAAATATATTACGCCGGCGCGGCAGGG GGAGCTGAAGGTGCGACGGGGGACAGTCGGCACAGTGGGGGAGGGGGGGG GGGGGGGGCGCTATCCTGTG
back to top

Coding sequence (CDS) from alignment at Contig_23:259135..260504+

>mRNA_4871 ID=mRNA_4871|Name=jgi.p|Trimin1|348347|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=702bp|location=Sequence derived from alignment at Contig_23:259135..260504+ (Tribonema minus UTEX_B_3156 )
ATGAGCGATATGAGCGCACGGCGACTGCGGCACGAGGCCATGGCTCTACA
AAAAAATCCTGTCGAAAACATACAGGCGCTCCCACTAGAGACCAATATAC
TGGAGTGGCACTACGTGATCACGGGAACGAAAGGGACGCCATTCGAGGGC
GGCTACTACCACGGCCTCCTGCGCTTCCCCGCAGAGTACCCGCTGAAACC
GCCATCCATACTCATGTACACGCCGAACGGGCGCTTCGCGACGAACCGCC
GCCTCTGCCTGAGCAACAGCGACTTCCACCCGGAGTCGTGGAACCCGGTG
TGGGGCGTGAGCACGATACTCATGGGACTCTACTCGTTCATGCTCGACAC
GGCGCCGACGCTCGGGTCCGTCACCACGTCCGCCGCCGCCAAGCGCAAGT
TCGCGGAGGAGTCGCTCGCGTTCAACGTGCGCGACAAGAACTTCTGCGCG
CTGTTCCCGGAACTCGCCGACCTCCACGTCGCGCTCGAGCTGCAGAAGCA
GCTGGAGCCCAGGGCGGCAAAGAAAGCGGCGGCGAACGGCAGCGGCGGCG
GTGGCGGCGGCGCGGCGGCGGGCGGCGGCGGCGCAGGGGCGACGGCGGCG
ACAGCAGCAGCGCCAAGAGCGGAGGAGCCGGGCGGGCTCACTGTTTTTGT
GTGCCTCATAGTTATCATGGGGGTGCTGGCGGTGATCCTGCGGCTGGGCT
AA
back to top