mRNA_17458 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|354258
Unique NamemRNA_17458
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|354258 vs. uniprot
Match: A0A836CIV8_9STRA (Uncharacterized protein n=4 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIV8_9STRA)

HSP 1 Score: 467 bits (1202), Expect = 1.160e-163
Identity = 239/239 (100.00%), Postives = 239/239 (100.00%), Query Frame = 1
Query:    1 MSYPAKATSNSDGVLAKIRCPACVPAGSEHLEGTSTVRSQLPFMEERNFEKDGRSWTSKFCGEHKKDLYSNDNGKKSKRICLSCLHPFSAGKQGGTVHNMSITLPEGKNGDKRAMHADWGGCQLGIMSEDDFKKNLPCMHSSAHPNASELQVAPALVALCESTKAHKDKSMEDKPTTRFLHGGYAIHLACARQRRAFLVAELKQWADPPSAXXXXXXXXXXXXXXTKRKFGGLEGDDDE 717
            MSYPAKATSNSDGVLAKIRCPACVPAGSEHLEGTSTVRSQLPFMEERNFEKDGRSWTSKFCGEHKKDLYSNDNGKKSKRICLSCLHPFSAGKQGGTVHNMSITLPEGKNGDKRAMHADWGGCQLGIMSEDDFKKNLPCMHSSAHPNASELQVAPALVALCESTKAHKDKSMEDKPTTRFLHGGYAIHLACARQRRAFLVAELKQWADPPSAXXXXXXXXXXXXXXTKRKFGGLEGDDDE
Sbjct:    1 MSYPAKATSNSDGVLAKIRCPACVPAGSEHLEGTSTVRSQLPFMEERNFEKDGRSWTSKFCGEHKKDLYSNDNGKKSKRICLSCLHPFSAGKQGGTVHNMSITLPEGKNGDKRAMHADWGGCQLGIMSEDDFKKNLPCMHSSAHPNASELQVAPALVALCESTKAHKDKSMEDKPTTRFLHGGYAIHLACARQRRAFLVAELKQWADPPSAXXXXXXXXXXXXXXTKRKFGGLEGDDDE 239          
BLAST of jgi.p|Trimin1|354258 vs. uniprot
Match: A0A836CID0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CID0_9STRA)

HSP 1 Score: 1829 bits (4737), Expect = 0.000e+0
Identity = 1100/1100 (100.00%), Postives = 1100/1100 (100.00%), Query Frame = 1
Query:    1 MKAKANRPPRRRTLDPSFGARCDTGGSGGHSGAWGWRWWQHSHPVRPPPSVPTTKAYGSSGAKGGTGPARGSCGGGYWRSGGGSGCSSSHNSVVSPASDTRSCAATGPHTSSTQMSAEDDELDDSAGAHPYGGDGGSSDSTDWHQCSGGSSAAELVELTTASAAHDVASTAHGGDGRQACSMGICCSSSSSNGSHTEGAFVIVARHTASKPDVLDLDDGNLETLLDTYPYLALAVLDDSPRSLALAAVWEQASAALLRAHGGGSXXXXXXXXXXXXXXXXXXXXXXXDADAAAQFARVVLPQQPGVHEWLAMYEGVPKQTRRERARCRDGRARRTHGALLPCHRAQAGAAAAPAAVVIRHGAVYEYGGSLDAPQRAAAYVLEDSQPVVARVRSVRGVGLLLRQGTVAVRSDADGHRWRTAAAPAPSRVVLGLFPEGAADGGCADAYAADGAAPLLSTAWQHFCAVAEALRGSGGDGAAAFSXXXXXXXXXXXXXXXXXXXXXXXXXXXGDGHSSDXXXXXXXXXXXXXXXXXXXXXXXXXXXGMAFAVTTDARLFDAVAGAGDTLAAARAEAAWRDAAXXXXXXDGGGVQEMGGAFTDAPALVLLEPTAPILSGDAAAHYSTHTYTGPLARRPLLDWVLATAPPPLTRLVGGPRAGPARVLLTARWLAARSGXXXXXXXXXVPALRVIAFTRGDAAEVAELAAAACALRGAAAFGYVVGGSFEEASAAAACPQQRIASLTKTAQLKLQCAAASPWLPAGVADAAAARAYGVDTTARRRAAAAIVAHDRESGLRYHMPAPPPSAPVTAVXXXTATDVMEWAAAVLSGAVRPTPRSEPLPPPRAGGGGLQGQGKGEGGDVARLVGLSFAAEVARAGRDALVAVVSPRCAASRALRVELAVLAHALASESRVLIAYVDGTANDLPASVRVDAYPAVLWFPARGKPYADASLPEPAPYWEDALGFEDMLGFIVQDASRVFXXXXXXXXXQSSFDRATLAVPDWQGMDALYAARDELLAAAETQAHWELRNARRAHYTSPRLDWAFGEVVFDGRRWHIAAAFAAPLAMLAAQXXXXXXXXXXXXLLQAETPRAGAASPGSPSSPQ 3300
            MKAKANRPPRRRTLDPSFGARCDTGGSGGHSGAWGWRWWQHSHPVRPPPSVPTTKAYGSSGAKGGTGPARGSCGGGYWRSGGGSGCSSSHNSVVSPASDTRSCAATGPHTSSTQMSAEDDELDDSAGAHPYGGDGGSSDSTDWHQCSGGSSAAELVELTTASAAHDVASTAHGGDGRQACSMGICCSSSSSNGSHTEGAFVIVARHTASKPDVLDLDDGNLETLLDTYPYLALAVLDDSPRSLALAAVWEQASAALLRAHGGGSXXXXXXXXXXXXXXXXXXXXXXXDADAAAQFARVVLPQQPGVHEWLAMYEGVPKQTRRERARCRDGRARRTHGALLPCHRAQAGAAAAPAAVVIRHGAVYEYGGSLDAPQRAAAYVLEDSQPVVARVRSVRGVGLLLRQGTVAVRSDADGHRWRTAAAPAPSRVVLGLFPEGAADGGCADAYAADGAAPLLSTAWQHFCAVAEALRGSGGDGAAAFSXXXXXXXXXXXXXXXXXXXXXXXXXXXGDGHSSDXXXXXXXXXXXXXXXXXXXXXXXXXXXGMAFAVTTDARLFDAVAGAGDTLAAARAEAAWRDAAXXXXXXDGGGVQEMGGAFTDAPALVLLEPTAPILSGDAAAHYSTHTYTGPLARRPLLDWVLATAPPPLTRLVGGPRAGPARVLLTARWLAARSGXXXXXXXXXVPALRVIAFTRGDAAEVAELAAAACALRGAAAFGYVVGGSFEEASAAAACPQQRIASLTKTAQLKLQCAAASPWLPAGVADAAAARAYGVDTTARRRAAAAIVAHDRESGLRYHMPAPPPSAPVTAVXXXTATDVMEWAAAVLSGAVRPTPRSEPLPPPRAGGGGLQGQGKGEGGDVARLVGLSFAAEVARAGRDALVAVVSPRCAASRALRVELAVLAHALASESRVLIAYVDGTANDLPASVRVDAYPAVLWFPARGKPYADASLPEPAPYWEDALGFEDMLGFIVQDASRVFXXXXXXXXXQSSFDRATLAVPDWQGMDALYAARDELLAAAETQAHWELRNARRAHYTSPRLDWAFGEVVFDGRRWHIAAAFAAPLAMLAAQXXXXXXXXXXXXLLQAETPRAGAASPGSPSSPQ
Sbjct:    1 MKAKANRPPRRRTLDPSFGARCDTGGSGGHSGAWGWRWWQHSHPVRPPPSVPTTKAYGSSGAKGGTGPARGSCGGGYWRSGGGSGCSSSHNSVVSPASDTRSCAATGPHTSSTQMSAEDDELDDSAGAHPYGGDGGSSDSTDWHQCSGGSSAAELVELTTASAAHDVASTAHGGDGRQACSMGICCSSSSSNGSHTEGAFVIVARHTASKPDVLDLDDGNLETLLDTYPYLALAVLDDSPRSLALAAVWEQASAALLRAHGGGSXXXXXXXXXXXXXXXXXXXXXXXDADAAAQFARVVLPQQPGVHEWLAMYEGVPKQTRRERARCRDGRARRTHGALLPCHRAQAGAAAAPAAVVIRHGAVYEYGGSLDAPQRAAAYVLEDSQPVVARVRSVRGVGLLLRQGTVAVRSDADGHRWRTAAAPAPSRVVLGLFPEGAADGGCADAYAADGAAPLLSTAWQHFCAVAEALRGSGGDGAAAFSXXXXXXXXXXXXXXXXXXXXXXXXXXXGDGHSSDXXXXXXXXXXXXXXXXXXXXXXXXXXXGMAFAVTTDARLFDAVAGAGDTLAAARAEAAWRDAAXXXXXXDGGGVQEMGGAFTDAPALVLLEPTAPILSGDAAAHYSTHTYTGPLARRPLLDWVLATAPPPLTRLVGGPRAGPARVLLTARWLAARSGXXXXXXXXXVPALRVIAFTRGDAAEVAELAAAACALRGAAAFGYVVGGSFEEASAAAACPQQRIASLTKTAQLKLQCAAASPWLPAGVADAAAARAYGVDTTARRRAAAAIVAHDRESGLRYHMPAPPPSAPVTAVXXXTATDVMEWAAAVLSGAVRPTPRSEPLPPPRAGGGGLQGQGKGEGGDVARLVGLSFAAEVARAGRDALVAVVSPRCAASRALRVELAVLAHALASESRVLIAYVDGTANDLPASVRVDAYPAVLWFPARGKPYADASLPEPAPYWEDALGFEDMLGFIVQDASRVFXXXXXXXXXQSSFDRATLAVPDWQGMDALYAARDELLAAAETQAHWELRNARRAHYTSPRLDWAFGEVVFDGRRWHIAAAFAAPLAMLAAQXXXXXXXXXXXXLLQAETPRAGAASPGSPSSPQ 1100          
BLAST of jgi.p|Trimin1|354258 vs. uniprot
Match: A0A482SI19_9ARCH (Thioredoxin domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SI19_9ARCH)

HSP 1 Score: 139 bits (350), Expect = 1.460e-31
Identity = 84/241 (34.85%), Postives = 125/241 (51.87%), Query Frame = 1
Query: 2446 VMEWAAAVLSGAVRPTPRSEPLPPPRAGGGGLQGQGKGEGGDVARLVGLSFAAEVARAGRDALVAVVSPRCAASRALRVELAVLAHALASESRVLIAYVDGTANDLPASVRVDAYPAVLWFPARGKPYADASLPEPAPYWEDALGFEDMLGFIVQDASRVFXXXXXXXXXQSSFDRATLAVPDWQGMDALYAARDELLAAAETQAHWELRNARRAHYTSPRLDWAFGEVVFDGRRWHIAAA 3168
            + ++   VL+G V    +SEPLP             K + G   R+VG +    V++   D L+A+  P CA  + L     +L  A+ SESR+LIA +D +ANDLP++  V  YP +LWFPAR KPY ++++P P  YW+     +++ GF+ +D               SSFD  +L +   + + +L    D   A  E +   + RN  R  Y  P +DW  GEVVFDG+RWH+ AA
Sbjct:  172 LQDFVVGVLTGLVPKVLKSEPLP-------------KKQSGVAQRVVGSNVLDVVSKIDTDVLLAITVPGCAHCKRLLPAYELLGRAVQSESRILIARIDASANDLPSTWGVSDYPTLLWFPARDKPYKESTVPTPRQYWDAGFSLQELAGFVQRD---------------SSFDPKSLRIATAEQLSSLQGDEDIYRAKFEEEERVQRRNEGRIVYEVPFVDWLLGEVVFDGKRWHLGAA 384          
BLAST of jgi.p|Trimin1|354258 vs. uniprot
Match: A0A7S3XLQ2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XLQ2_HETAK)

HSP 1 Score: 122 bits (307), Expect = 1.630e-26
Identity = 93/282 (32.98%), Postives = 131/282 (46.45%), Query Frame = 1
Query: 2344 AIVAHDRESGLRYHMPAPPPSAPVTAVXXXTATDVMEWAAAVLSGAVRPTPRSEPLPPPRAGGGGLQGQGKGEGGDVARLVGLSFAAEVARAGRDALVAVVSPRCAASRALRVELAVLAHALASESRVLIAYVDGTANDLPASVRVDAYPAVLWFPARGKPYADASLPEPAPYW-EDALGFEDMLGFIVQDASRVFXXXXXXXXXQSSFDRATLAVPDWQGMDALYAARDELLAAAETQAHWELRNARRAHYTSPRLDWAFGEVVFDGRRWHIAAAFAAPLA 3186
            A++AHD     R+         P T        ++M + + VL G ++P+ +SEP+P             K   G V +LVG +F  EV++ G D LV V +P CA S AL     +L  AL  E RV++A +DG ANDLP  + V AYP +LWFPA  KPY     P+P     E     +++L F+ ++AS                     A P+   +D L      L   A  +A W LRN  R  +    +D+  G+VVFDG RW I    A  L+
Sbjct:   77 ALIAHDPAQDTRF---------PSTYEEPLEYDNIMSFMSDVLEGRLKPSFKSEPVP-------------KKNDGPVKKLVGSTFVEEVSKEGVDVLVKVYAPWCAHSAALAPAYELLGRALGGEPRVVVAEIDGAANDLPPHLDVQAYPDLLWFPAADKPYPGKGAPQPRALGREPGRSLQELLAFVRREAS-------------PGGPPLRAATPEQ--LDTLAQEAPALEEQALRRARWALRNKDRVVFEPALVDYLVGDVVFDGCRWMIGLVVALVLS 321          
BLAST of jgi.p|Trimin1|354258 vs. uniprot
Match: A0A7S3GYC8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GYC8_9STRA)

HSP 1 Score: 102 bits (254), Expect = 8.450e-21
Identity = 75/241 (31.12%), Postives = 113/241 (46.89%), Query Frame = 1
Query: 2461 AAVLSGAVRPTPRSEPLPPPRAGGGGLQGQGKGEGGDVARLVGLSFAAEVARAGRDALVAVVSPRCAASRALRVELAVLAHALASESRVLIAYVDGTANDLPASVRVDAYPAVLWFPARGKPYA--DASLPEPAPYWEDALGFEDMLGFIVQDASRVFXXXXXXXXXQSSFDRATLAVPDWQGMDALYAARDELLAAAETQAHWELRNARRAHYT-SPRLDWAFGEVVFDGRRWHIAAAFA 3174
            A V++G V    ++EP+P P                 V   VG +    V + G+D L+ V +P C   + L     +LA A+ +E R++IA ++G  ND+P+S  V AYP +LWF A  K     D S   P  YW+      ++  F+ ++ S               FD  +L V   + + +L  A + L    E +   ++RN  R  Y  SP LD+  GEVVFDG+RWH+A   A
Sbjct:    1 AGVITGVVPKVVKTEPVPKP-------------SNNLVVTAVGSNVMDIVNQPGKDVLLVVFAPWCTHCKKLLPTYEILARAVQNEPRIVIAKINGETNDIPSSWGVKAYPTLLWFRASDKEAVKGDFSALLPRDYWDAGYSLHELASFVQREGS---------------FDLKSLRVASNEQLASLQGAEEALRVQYEIEERHQMRNMGRVVYEDSPLLDYFLGEVVFDGKRWHVAMTAA 213          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354258 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CIV8_9STRA1.160e-163100.00Uncharacterized protein n=4 Tax=Tribonema minus Ta... [more]
back to top
BLAST of jgi.p|Trimin1|354258 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A836CID0_9STRA0.000e+0100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A482SI19_9ARCH1.460e-3134.85Thioredoxin domain-containing protein n=1 Tax=arch... [more]
A0A7S3XLQ2_HETAK1.630e-2632.98Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3GYC8_9STRA8.450e-2131.12Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_222contigContig_222:168696..171108 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|354258|estExt_Genemark1.C_Ctg_2220022
Hectar predicted targeting categoryother localisation
TranscriptId354580
TrackFilteredModels1
ProteinId354258
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354258gene_17458Tribonema minus UTEX_B_3156 geneContig_222 168696..171108 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17458_3exon_17458_3Tribonema minus UTEX_B_3156 exonContig_222 168696..169565 -
exon_17458_2exon_17458_2Tribonema minus UTEX_B_3156 exonContig_222 170707..170927 -
exon_17458_1exon_17458_1Tribonema minus UTEX_B_3156 exonContig_222 171012..171108 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_17458UTR3_17458Tribonema minus UTEX_B_3156 three_prime_UTRContig_222 168696..169163 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17458CDS_17458Tribonema minus UTEX_B_3156 CDSContig_222 171012..171108 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354258Trimin1|354258|estExt_Genemark1.C_Ctg_2220022Tribonema minus UTEX_B_3156 polypeptideContig_222 169164..171108 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17458 ID=mRNA_17458|Name=jgi.p|Trimin1|354258|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1188bp|location=Sequence derived from alignment at Contig_222:168696..171108- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTATCCTGCCAAAGCCACCAGCAACTCTGACGGTGTGCTGGCCAA
GATCAGATGCCCGGCTTGCGTCCCCGCGGGGAGCGAGCACTTGGAAGGCA
CCAGCACGGTGCGGTCGCAACTGCCGTTCATGGAAGAGCGCAACTTTGAG
AAGGACGGCAGGAGCTGGACGAGCAAGTTCTGCGGTGAACACAAGAAGGA
CCTTTACAGCAACGACAACGGGAAGAAGTCAAAGCGGATCTGCCTGTCTT
GCCTTCACCCCTTCTCCGCTGGCAAGCAGGGAGGAACGGTGCACAACATG
TCCATCACGCTGCCGGAGGGCAAGAACGGAGACAAGCGAGCCATGCATGC
TGATTGGGGAGGCTGCCAGCTCGGCATCATGAGTGAGGACGACTTCAAGA
AGAACCTGCCCTGCATGCACTCGTCCGCCCACCCCAATGCCAGCGAGTTG
CAGGTGGCTCCAGCGCTGGTGGCGCTCTGCGAGTCCACTAAGGCGCACAA
GGACAAGTCCATGGAGGATAAGCCCACGACGCGGTTCCTGCACGGCGGCT
ATGCCATTCATCTGGCGTGCGCCCGCCAGCGTCGAGCCTTCCTGGTCGCC
GAACTGAAGCAGTGGGCGGACCCACCGTCCGCTGAGGACGACGAGCAGGA
CGAGGATGGGGGTGGGGGTGGAGGCACCAAGCGAAAGTTCGGCGGCCTGG
AAGGCGACGACGACGAGTAGCTTCGTGGGCGTGTGGCGCATGCATGGCGA
CAGTTGCGCTGTAGCAAATTGTCAGTCGCGCCCCTATCGCTTCTTGCGCC
GACGGTGCACTCACGACGGTGCTGTGCATTGCGAAGTCATTTCATGTTTG
TAATGTGCACGCATCGGCCTGCACAGTGCTTCTGTGCCTGCAGTCGCACA
GTGTCACTCGTGCCTGCACAGTGCTTTTATGCCAGCGGTGCGCTACTGCA
GCTTGTGTTCGTCGAGTAATTGCCTAATTGTAGTGTGCACGCGCCCGCCT
GCACAGTGCCTTGTGCCTGCGGTGCACCGATGCAGCTATGTTAAAGCAGG
TACGCTGCACAGTGCTGTGATGCACTCATGCAGCTTCTCTGTGTGTCTGG
CAAGTCATTTGGCAAGTCATTGGCTACTTCTACTGTGCACGCGCCCGCCT
ACACAATGCCGTGTGCATGTGTTCATAATGTACATTCG
back to top

protein sequence of jgi.p|Trimin1|354258

>Trimin1|354258|estExt_Genemark1.C_Ctg_2220022 ID=Trimin1|354258|estExt_Genemark1.C_Ctg_2220022|Name=jgi.p|Trimin1|354258|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=240bp
MSYPAKATSNSDGVLAKIRCPACVPAGSEHLEGTSTVRSQLPFMEERNFE
KDGRSWTSKFCGEHKKDLYSNDNGKKSKRICLSCLHPFSAGKQGGTVHNM
SITLPEGKNGDKRAMHADWGGCQLGIMSEDDFKKNLPCMHSSAHPNASEL
QVAPALVALCESTKAHKDKSMEDKPTTRFLHGGYAIHLACARQRRAFLVA
ELKQWADPPSAEDDEQDEDGGGGGGTKRKFGGLEGDDDE*
back to top

mRNA from alignment at Contig_222:168696..171108-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17458 ID=mRNA_17458|Name=jgi.p|Trimin1|354258|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2413bp|location=Sequence derived from alignment at Contig_222:168696..171108- (Tribonema minus UTEX_B_3156 )
ATGTCTTATCCTGCCAAAGCCACCAGCAACTCTGACGGTGTGCTGGCCAA GATCAGATGCCCGGCTTGCGTCCCCGCGGGGAGCGAGCACTTGGAAGGTG CGTTCACGCAGTCACGAAACAATTTATGCCTTATTTGTACAGCCTCCGTG CGAACCGTGCTCCATCCGATCTACGATGCAGGCACCAGCACGGTGCGGTC GCAACTGCCGTTCATGGAAGAGCGCAACTTTGAGAAGGACGGCAGGAGCT GGACGAGCAAGTTCTGCGGTGAACACAAGAAGGACCTTTACAGCAACGAC AACGGGAAGAAGTCAAAGCGGATCTGCCTGTCTTGCCTTCACCCCTTCTC CGCTGGCAAGCAGGGAGGAACGGTGCACAACATGTCCATCACGCTGCCGG AGGTAAATTCAACCTTGCAGTTCTTGCCATGCTCACTTTATCGTCTTGCC GCCGATATGCCAGCCATGTTGGCCACACTTAAGCTTTGCTGCAATCCCCA TGGTGCTAGTTGCGTTTGTTTTACATATGGCTGAGTGAGACTCTGCTCGC AGTGCCATTAAGCTTTGCTGCAAAACCCATGGTCCTAGTTGCATTGGTTG CACATATTACTGTCTGTGCTCGCAGCGCCTTTCGCGCCGTCAACGTCCAT GGCGCCATCTGCTCACCGCGCCAGTTGCTGATCACTAAATATGGCGTGTC ATGCATGACCAGGATGGGCATGAGAGACTAGTGCAAGCGCTGATAGCACC ATCTGCTCGCCGCGCCAATTCCTCATTTTCGGCTCTAATGTACTACCATC TTGCCACAGCTCTGCAGGCCGCTCATCTTGCCTTCTTGCAGTGCTCACGG TGCCATATTGCTGACAGTGCTCAACGCACCGTTTGCTGACGCAGCCACAG CATCGATGGCGCCATCCGGTAGCCGCGCATTAGGCTTACCGTTACAACAT ATATGCAACAATTCTCCTCGTGCTCCACATGTGTAAACAATTCTCCTCAT GCTCTTCTGCACCCGCAGTCTGCTCCGACGACACGCGCACTGCCCGTTTC CCTCATTTGCCTTCTTGCCATATTGCTGACACTGCTCAACGCGCGCGCCT TCTGCTGACGCAGCCACAACATCTATGGCACCATCCACTCGCCGCACATT CGGCTTACTGTTACAACATATATGCAACAATTCTCCTCGTGCTCAACATA GTATTTGCAACAATTCTCCTCATGCTCTTCTGCACCCGAAGCCTGCTGAG ACAACACACGCACTGCATGTGTACCTCATTTCCGGTTGTGTTTAGCAGCA GCACTCATCACCAGTGCATCCATCATCCTTTCTCGTGCTTTCATGGTGCC AGCATTGGCCCTGCCCACTCTTGCACAGGTACTATGCATCAACTTCTCTT TGTGCGCTTCTCCGCCTGCAGCGTGCTCCATGTGTCACAACCCTCACTGC CTGTCATTCGCTCCCCACAACACATGCACTGCAGCCCCGCCTGCTGTTAC ACTGGCCGTGTCCTGATGGCGCACATCTTTTTACCACTCGCAGGGCAAGA ACGGAGACAAGCGAGCCATGCATGCTGATTGGGGAGGCTGCCAGCTCGGC ATCATGAGTGAGGACGACTTCAAGAAGAACCTGCCCTGCATGCACTCGTC CGCCCACCCCAATGCCAGCGAGTTGCAGGTGGCTCCAGCGCTGGTGGCGC TCTGCGAGTCCACTAAGGCGCACAAGGACAAGTCCATGGAGGATAAGCCC ACGACGCGGTTCCTGCACGGCGGCTATGCCATTCATCTGGCGTGCGCCCG CCAGCGTCGAGCCTTCCTGGTCGCCGAACTGAAGCAGTGGGCGGACCCAC CGTCCGCTGAGGACGACGAGCAGGACGAGGATGGGGGTGGGGGTGGAGGC ACCAAGCGAAAGTTCGGCGGCCTGGAAGGCGACGACGACGAGTAGCTTCG TGGGCGTGTGGCGCATGCATGGCGACAGTTGCGCTGTAGCAAATTGTCAG TCGCGCCCCTATCGCTTCTTGCGCCGACGGTGCACTCACGACGGTGCTGT GCATTGCGAAGTCATTTCATGTTTGTAATGTGCACGCATCGGCCTGCACA GTGCTTCTGTGCCTGCAGTCGCACAGTGTCACTCGTGCCTGCACAGTGCT TTTATGCCAGCGGTGCGCTACTGCAGCTTGTGTTCGTCGAGTAATTGCCT AATTGTAGTGTGCACGCGCCCGCCTGCACAGTGCCTTGTGCCTGCGGTGC ACCGATGCAGCTATGTTAAAGCAGGTACGCTGCACAGTGCTGTGATGCAC TCATGCAGCTTCTCTGTGTGTCTGGCAAGTCATTTGGCAAGTCATTGGCT ACTTCTACTGTGCACGCGCCCGCCTACACAATGCCGTGTGCATGTGTTCA TAATGTACATTCG
back to top

Coding sequence (CDS) from alignment at Contig_222:168696..171108-

>mRNA_17458 ID=mRNA_17458|Name=jgi.p|Trimin1|354258|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=720bp|location=Sequence derived from alignment at Contig_222:168696..171108- (Tribonema minus UTEX_B_3156 )
ATGTCTTATCCTGCCAAAGCCACCAGCAACTCTGACGGTGTGCTGGCCAA
GATCAGATGCCCGGCTTGCGTCCCCGCGGGGAGCGAGCACTTGGAAGGCA
CCAGCACGGTGCGGTCGCAACTGCCGTTCATGGAAGAGCGCAACTTTGAG
AAGGACGGCAGGAGCTGGACGAGCAAGTTCTGCGGTGAACACAAGAAGGA
CCTTTACAGCAACGACAACGGGAAGAAGTCAAAGCGGATCTGCCTGTCTT
GCCTTCACCCCTTCTCCGCTGGCAAGCAGGGAGGAACGGTGCACAACATG
TCCATCACGCTGCCGGAGGGCAAGAACGGAGACAAGCGAGCCATGCATGC
TGATTGGGGAGGCTGCCAGCTCGGCATCATGAGTGAGGACGACTTCAAGA
AGAACCTGCCCTGCATGCACTCGTCCGCCCACCCCAATGCCAGCGAGTTG
CAGGTGGCTCCAGCGCTGGTGGCGCTCTGCGAGTCCACTAAGGCGCACAA
GGACAAGTCCATGGAGGATAAGCCCACGACGCGGTTCCTGCACGGCGGCT
ATGCCATTCATCTGGCGTGCGCCCGCCAGCGTCGAGCCTTCCTGGTCGCC
GAACTGAAGCAGTGGGCGGACCCACCGTCCGCTGAGGACGACGAGCAGGA
CGAGGATGGGGGTGGGGGTGGAGGCACCAAGCGAAAGTTCGGCGGCCTGG
AAGGCGACGACGACGAGTAG
back to top