Trimin1|354258|estExt_Genemark1.C_Ctg_2220022 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|354258
Unique NameTrimin1|354258|estExt_Genemark1.C_Ctg_2220022
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length240
Homology
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BLAST of jgi.p|Trimin1|354258 vs. uniprot
Match: A0A836CIV8_9STRA (Uncharacterized protein n=4 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIV8_9STRA)

HSP 1 Score: 466 bits (1199), Expect = 7.510e-166
Identity = 239/239 (100.00%), Postives = 239/239 (100.00%), Query Frame = 0 
Query:    1 MSYPAKATSNSDGVLAKIRCPACVPAGSEHLEGTSTVRSQLPFMEERNFEKDGRSWTSKFCGEHKKDLYSNDNGKKSKRICLSCLHPFSAGKQGGTVHNMSITLPEGKNGDKRAMHADWGGCQLGIMSEDDFKKNLPCMHSSAHPNASELQVAPALVALCESTKAHKDKSMEDKPTTRFLHGGYAIHLACARQRRAFLVAELKQWADPPSAXXXXXXXXXXXXXXTKRKFGGLEGDDDE 239
            MSYPAKATSNSDGVLAKIRCPACVPAGSEHLEGTSTVRSQLPFMEERNFEKDGRSWTSKFCGEHKKDLYSNDNGKKSKRICLSCLHPFSAGKQGGTVHNMSITLPEGKNGDKRAMHADWGGCQLGIMSEDDFKKNLPCMHSSAHPNASELQVAPALVALCESTKAHKDKSMEDKPTTRFLHGGYAIHLACARQRRAFLVAELKQWADPPSAXXXXXXXXXXXXXXTKRKFGGLEGDDDE
Sbjct:    1 MSYPAKATSNSDGVLAKIRCPACVPAGSEHLEGTSTVRSQLPFMEERNFEKDGRSWTSKFCGEHKKDLYSNDNGKKSKRICLSCLHPFSAGKQGGTVHNMSITLPEGKNGDKRAMHADWGGCQLGIMSEDDFKKNLPCMHSSAHPNASELQVAPALVALCESTKAHKDKSMEDKPTTRFLHGGYAIHLACARQRRAFLVAELKQWADPPSAXXXXXXXXXXXXXXTKRKFGGLEGDDDE 239
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354258 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CIV8_9STRA7.510e-166100.00Uncharacterized protein n=4 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 220..239
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 201..239

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_222contigContig_222:169164..171108 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354258mRNA_17458Tribonema minus UTEX_B_3156 mRNAContig_222 168696..171108 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|354258|estExt_Genemark1.C_Ctg_2220022 ID=Trimin1|354258|estExt_Genemark1.C_Ctg_2220022|Name=jgi.p|Trimin1|354258|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=240bp
MSYPAKATSNSDGVLAKIRCPACVPAGSEHLEGTSTVRSQLPFMEERNFE
KDGRSWTSKFCGEHKKDLYSNDNGKKSKRICLSCLHPFSAGKQGGTVHNM
SITLPEGKNGDKRAMHADWGGCQLGIMSEDDFKKNLPCMHSSAHPNASEL
QVAPALVALCESTKAHKDKSMEDKPTTRFLHGGYAIHLACARQRRAFLVA
ELKQWADPPSAEDDEQDEDGGGGGGTKRKFGGLEGDDDE*
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