mRNA_17442 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|152996 vs. uniprot
Match: A0A836CIV3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIV3_9STRA) HSP 1 Score: 219 bits (559), Expect = 1.310e-72 Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1
Query: 1 MKLGLVTMGLCRAMLSFAQRLNRNMHYSFGSKDNSELPHISFPLVTNVDTLLVTPQGEAPPPLGQRFVEDPVLKKERMSGKAGPASFSLDCTYTFSFHSMYLSLPAW 321
MKLGLVTMGLCRAMLSFAQRLNRNMHYSFGSKDNSELPHISFPLVTNVDTLLVTPQGEAPPPLGQRFVEDPVLKKERMSGKAGPASFSLDCTYTFSFHSMYLSLPAW
Sbjct: 1 MKLGLVTMGLCRAMLSFAQRLNRNMHYSFGSKDNSELPHISFPLVTNVDTLLVTPQGEAPPPLGQRFVEDPVLKKERMSGKAGPASFSLDCTYTFSFHSMYLSLPAW 107
BLAST of jgi.p|Trimin1|152996 vs. uniprot
Match: D8LMK0_ECTSI (DUF547 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMK0_ECTSI) HSP 1 Score: 128 bits (321), Expect = 3.740e-32 Identity = 61/111 (54.95%), Postives = 78/111 (70.27%), Query Frame = 1
Query: 1 MKLGLVTMGLCRAMLSFAQRLNRNMHYSFGSKDNSELPHISFPLVTNVDTLLVTPQGEAPPPLGQRFVEDPVLKKERMSGKA----GPASFSLDCTYTFSFHSMYLSLPAW 321
MKLGL+T GLC+ +LSF Q+LNR +HYSFG DN+ELPHISFPL+T+VD+L+ TP+G+ P LG+ F ED K R G+ G F CTY+FSFHSMY+ + W
Sbjct: 586 MKLGLLTRGLCKLLLSFGQKLNRRLHYSFGDNDNAELPHISFPLLTSVDSLVCTPEGQEVPALGKSFEEDKDRKASRRRGEEDKALGIGDFQTGCTYSFSFHSMYIDMAQW 696
BLAST of jgi.p|Trimin1|152996 vs. uniprot
Match: A0A6H5KCR6_9PHAE (DUF547 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCR6_9PHAE) HSP 1 Score: 127 bits (319), Expect = 6.970e-32 Identity = 62/111 (55.86%), Postives = 79/111 (71.17%), Query Frame = 1
Query: 1 MKLGLVTMGLCRAMLSFAQRLNRNMHYSFGSKDNSELPHISFPLVTNVDTLLVTPQGEAPPPLGQRFVEDPVLKKERMSGKAGPAS----FSLDCTYTFSFHSMYLSLPAW 321
MKLGL+T GLC+ +LSF Q+LNR +HYSFG KDN+ELPHISFPL+T+VD+L+ TP+G+ P LG+ F ED K R G+ AS F TY+FSFHSMY+ + W
Sbjct: 476 MKLGLLTRGLCKLLLSFGQKLNRRLHYSFGDKDNAELPHISFPLLTSVDSLICTPEGQEVPALGKTFEEDKDSKASRRRGEEDKASGIGDFQTGFTYSFSFHSMYIDMAQW 586
BLAST of jgi.p|Trimin1|152996 vs. uniprot
Match: A0A836CF94_9STRA (Chromate transporter-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF94_9STRA) HSP 1 Score: 114 bits (284), Expect = 3.630e-27 Identity = 57/93 (61.29%), Postives = 68/93 (73.12%), Query Frame = 1
Query: 1 MKLGLVTMGLCRAMLSFAQRLNRNMHYSFGSKDNSELPHISFPLVTNVDTLLVTPQGEAPPPLGQRFVEDPVLKKERMSGKAGPASFSLDCTY 279
M+LGL TMGLCRA+L+ AQR N +HYSFG+KDNSELPHISFPL+T VD L+VTP GE PP LGQ + E KK+R++G FS TY
Sbjct: 1075 MRLGLATMGLCRALLTVAQRANSRIHYSFGTKDNSELPHISFPLLTGVDDLIVTPPGEDPPALGQPWSEAAFRKKQRLAGGCDSFLFSAQNTY 1167
BLAST of jgi.p|Trimin1|152996 vs. uniprot
Match: A0A061RNH2_9CHLO (PH domain-containing protein n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RNH2_9CHLO) HSP 1 Score: 110 bits (274), Expect = 8.010e-26 Identity = 54/107 (50.47%), Postives = 69/107 (64.49%), Query Frame = 1
Query: 1 MKLGLVTMGLCRAMLSFAQRLNRNMHYSFGSKDNSELPHISFPLVTNVDTLLVTPQGEAPPPLGQRFVEDPVLKKERMSGKAGPASFSLDCTYTFSFHSMYLSLPAW 321
M+LGLVT LC +L F +++N+ +HYSFG NSELPHI FPL +N D L+VTP GE PP LG VE + R + P ++ CTYTFSF+SMY+ L W
Sbjct: 51 MELGLVTRSLCNVLLGFVKKINKTLHYSFGDSQNSELPHIVFPLWSNCDRLVVTPAGEQPPELGVPVVESEGSRHAR-ARTPKPDAYDTSCTYTFSFNSMYIDLQRW 156
BLAST of jgi.p|Trimin1|152996 vs. uniprot
Match: A0A7R9Y8C6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y8C6_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 3.980e-18 Identity = 45/107 (42.06%), Postives = 59/107 (55.14%), Query Frame = 1
Query: 1 MKLGLVTMGLCRAMLSFAQRLNRNMHYSFGSKDNSELPHISFPLVTNVDTLLVTPQGEAPPPLGQRFVEDPVLKKERMSGKAGPASFSLDCTYTFSFHSMYLSLPAW 321
M+LGLV G R +L F RL MH+SFG+ D ELPHI PL D ++VTP+GE PPPLGQ E + +R S + F++ TYTF + + W
Sbjct: 262 MRLGLVAKGFARTVLGFISRLVNEMHWSFGTDDREELPHIVAPLWLAADRMVVTPEGEEPPPLGQEIPESDEDRAKRRSAQGDFGDFTVGPTYTFVIQTSNVDFTKW 368
BLAST of jgi.p|Trimin1|152996 vs. uniprot
Match: A0A7S4NAE6_9STRA (Hypothetical protein n=3 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NAE6_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 2.550e-17 Identity = 45/108 (41.67%), Postives = 62/108 (57.41%), Query Frame = 1
Query: 1 MKLGLVTMGLCRAMLSFAQR-LNRNMHYSFGSKDNSELPHISFPLVTNVDTLLVTPQGEAPPPLGQRFVEDPVLKKERMSGKAGPASFSLDCTYTFSFHSMYLSLPAW 321
MKLG V+ GLC +L R ++ +MHY+FG E PHI F + D L+VT +G+ PPP+G F E +R S +GP + T++ SF+SMYL LP W
Sbjct: 1 MKLGFVSKGLCNVLLKMMTRVISADMHYAFGDDGMEESPHIVFTAWSFFDRLVVTEEGDEPPPMGDPFPESDKAASKRKSS-SGPGEWRSGATFSMSFNSMYLDLPTW 107
BLAST of jgi.p|Trimin1|152996 vs. uniprot
Match: A0A836C9V5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9V5_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 1.510e-16 Identity = 42/110 (38.18%), Postives = 60/110 (54.55%), Query Frame = 1
Query: 10 GLVTMGLCRAMLSFAQRLNRNMHYSFGSKD------NSELPHISFPLVTNVDTLLVTPQGEAPPPLGQRFVEDPVLKKERMSGKAGPASFSLDCTYTFSFHSMYLSLPAW 321
GLVT L ++ FA +L + +HYSFG K ++E H +FPL +D +++TP GEA PPLG E ++ R +GK +F D TYT +FHS + W
Sbjct: 1 GLVTQALSSVVMRFASQLVKVLHYSFGDKKVPEDSGDAEPMHATFPLFRVMDRIVITPDGEAVPPLGVMIDEPDEERQARRAGKTPEPAFRTDATYTMAFHSGMVDFQKW 110
BLAST of jgi.p|Trimin1|152996 vs. uniprot
Match: A0A0M0JZC7_9EUKA (DUF547 domain-containing protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JZC7_9EUKA) HSP 1 Score: 74.7 bits (182), Expect = 2.120e-13 Identity = 47/116 (40.52%), Postives = 65/116 (56.03%), Query Frame = 1
Query: 1 MKLGLVTMGLCRAMLSFAQRLNRNMHYSFGS---KDNSELPHISFPLVTNVDTLLVTPQGEAPPPLGQ------RFVEDPVLKKERMSGKAGPASFSLDCTYTFSFHSMYLSLPAW 321
M+LGL+T G+ R +LS + +H+SFG+ N+E PHI L+ D ++VTP GEAPPPLG +ED +K R + G F + TYTFSF++ L LP W
Sbjct: 39 MQLGLLTKGVARGVLSLISAV-LPIHFSFGNPSLSQNAERPHIVSNLMIAADRMIVTPAGEAPPPLGTDATFDLEDLEDNAARKRRR--QLGAIPFEVGPTYTFSFNTSNLDLPTW 151
BLAST of jgi.p|Trimin1|152996 vs. uniprot
Match: A0A7S4L1L8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4L1L8_9EUKA) HSP 1 Score: 65.5 bits (158), Expect = 5.900e-11 Identity = 34/91 (37.36%), Postives = 57/91 (62.64%), Query Frame = 1
Query: 40 MLSFAQRLNRNMHYSFGSKDNSELPHISFPLVTNVDTLLVTPQGEAPPPLGQRFVEDPVLKKERMSGKAGPASFSLDCTYTFSFHSMYLSL 312
+L +R+ + H+SFG+K+ E PHI PLV+ +D+ +VTP+GE P LG + + +++ + G+ F + TYT SFHSMY+++
Sbjct: 10 ILQVLKRMVPDSHHSFGAKN--ETPHIVLPLVSAIDSFIVTPEGEESPSLGVESLPESNDQEDYIQGRE---KFKIGPTYTISFHSMYINV 95 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|152996 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_17442 ID=mRNA_17442|Name=jgi.p|Trimin1|152996|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=321bp|location=Sequence derived from alignment at Contig_222:71525..73187+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGAAGCTGGGGCTGGTGACGATGGGGCTGTGCCGAGCGATGCTGTCCTTback to top protein sequence of jgi.p|Trimin1|152996 >Trimin1|152996|gw1.222.48.1 ID=Trimin1|152996|gw1.222.48.1|Name=jgi.p|Trimin1|152996|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=107bp MKLGLVTMGLCRAMLSFAQRLNRNMHYSFGSKDNSELPHISFPLVTNVDTback to top mRNA from alignment at Contig_222:71525..73187+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_17442 ID=mRNA_17442|Name=jgi.p|Trimin1|152996|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1663bp|location=Sequence derived from alignment at Contig_222:71525..73187+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_222:71525..73187+ >mRNA_17442 ID=mRNA_17442|Name=jgi.p|Trimin1|152996|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=321bp|location=Sequence derived from alignment at Contig_222:71525..73187+ (Tribonema minus UTEX_B_3156 )back to top |