mRNA_17442 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|152996
Unique NamemRNA_17442
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|152996 vs. uniprot
Match: A0A836CIV3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIV3_9STRA)

HSP 1 Score: 219 bits (559), Expect = 1.310e-72
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1
Query:    1 MKLGLVTMGLCRAMLSFAQRLNRNMHYSFGSKDNSELPHISFPLVTNVDTLLVTPQGEAPPPLGQRFVEDPVLKKERMSGKAGPASFSLDCTYTFSFHSMYLSLPAW 321
            MKLGLVTMGLCRAMLSFAQRLNRNMHYSFGSKDNSELPHISFPLVTNVDTLLVTPQGEAPPPLGQRFVEDPVLKKERMSGKAGPASFSLDCTYTFSFHSMYLSLPAW
Sbjct:    1 MKLGLVTMGLCRAMLSFAQRLNRNMHYSFGSKDNSELPHISFPLVTNVDTLLVTPQGEAPPPLGQRFVEDPVLKKERMSGKAGPASFSLDCTYTFSFHSMYLSLPAW 107          
BLAST of jgi.p|Trimin1|152996 vs. uniprot
Match: D8LMK0_ECTSI (DUF547 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMK0_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 3.740e-32
Identity = 61/111 (54.95%), Postives = 78/111 (70.27%), Query Frame = 1
Query:    1 MKLGLVTMGLCRAMLSFAQRLNRNMHYSFGSKDNSELPHISFPLVTNVDTLLVTPQGEAPPPLGQRFVEDPVLKKERMSGKA----GPASFSLDCTYTFSFHSMYLSLPAW 321
            MKLGL+T GLC+ +LSF Q+LNR +HYSFG  DN+ELPHISFPL+T+VD+L+ TP+G+  P LG+ F ED   K  R  G+     G   F   CTY+FSFHSMY+ +  W
Sbjct:  586 MKLGLLTRGLCKLLLSFGQKLNRRLHYSFGDNDNAELPHISFPLLTSVDSLVCTPEGQEVPALGKSFEEDKDRKASRRRGEEDKALGIGDFQTGCTYSFSFHSMYIDMAQW 696          
BLAST of jgi.p|Trimin1|152996 vs. uniprot
Match: A0A6H5KCR6_9PHAE (DUF547 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCR6_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 6.970e-32
Identity = 62/111 (55.86%), Postives = 79/111 (71.17%), Query Frame = 1
Query:    1 MKLGLVTMGLCRAMLSFAQRLNRNMHYSFGSKDNSELPHISFPLVTNVDTLLVTPQGEAPPPLGQRFVEDPVLKKERMSGKAGPAS----FSLDCTYTFSFHSMYLSLPAW 321
            MKLGL+T GLC+ +LSF Q+LNR +HYSFG KDN+ELPHISFPL+T+VD+L+ TP+G+  P LG+ F ED   K  R  G+   AS    F    TY+FSFHSMY+ +  W
Sbjct:  476 MKLGLLTRGLCKLLLSFGQKLNRRLHYSFGDKDNAELPHISFPLLTSVDSLICTPEGQEVPALGKTFEEDKDSKASRRRGEEDKASGIGDFQTGFTYSFSFHSMYIDMAQW 586          
BLAST of jgi.p|Trimin1|152996 vs. uniprot
Match: A0A836CF94_9STRA (Chromate transporter-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF94_9STRA)

HSP 1 Score: 114 bits (284), Expect = 3.630e-27
Identity = 57/93 (61.29%), Postives = 68/93 (73.12%), Query Frame = 1
Query:    1 MKLGLVTMGLCRAMLSFAQRLNRNMHYSFGSKDNSELPHISFPLVTNVDTLLVTPQGEAPPPLGQRFVEDPVLKKERMSGKAGPASFSLDCTY 279
            M+LGL TMGLCRA+L+ AQR N  +HYSFG+KDNSELPHISFPL+T VD L+VTP GE PP LGQ + E    KK+R++G      FS   TY
Sbjct: 1075 MRLGLATMGLCRALLTVAQRANSRIHYSFGTKDNSELPHISFPLLTGVDDLIVTPPGEDPPALGQPWSEAAFRKKQRLAGGCDSFLFSAQNTY 1167          
BLAST of jgi.p|Trimin1|152996 vs. uniprot
Match: A0A061RNH2_9CHLO (PH domain-containing protein n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RNH2_9CHLO)

HSP 1 Score: 110 bits (274), Expect = 8.010e-26
Identity = 54/107 (50.47%), Postives = 69/107 (64.49%), Query Frame = 1
Query:    1 MKLGLVTMGLCRAMLSFAQRLNRNMHYSFGSKDNSELPHISFPLVTNVDTLLVTPQGEAPPPLGQRFVEDPVLKKERMSGKAGPASFSLDCTYTFSFHSMYLSLPAW 321
            M+LGLVT  LC  +L F +++N+ +HYSFG   NSELPHI FPL +N D L+VTP GE PP LG   VE    +  R +    P ++   CTYTFSF+SMY+ L  W
Sbjct:   51 MELGLVTRSLCNVLLGFVKKINKTLHYSFGDSQNSELPHIVFPLWSNCDRLVVTPAGEQPPELGVPVVESEGSRHAR-ARTPKPDAYDTSCTYTFSFNSMYIDLQRW 156          
BLAST of jgi.p|Trimin1|152996 vs. uniprot
Match: A0A7R9Y8C6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y8C6_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 3.980e-18
Identity = 45/107 (42.06%), Postives = 59/107 (55.14%), Query Frame = 1
Query:    1 MKLGLVTMGLCRAMLSFAQRLNRNMHYSFGSKDNSELPHISFPLVTNVDTLLVTPQGEAPPPLGQRFVEDPVLKKERMSGKAGPASFSLDCTYTFSFHSMYLSLPAW 321
            M+LGLV  G  R +L F  RL   MH+SFG+ D  ELPHI  PL    D ++VTP+GE PPPLGQ   E    + +R S +     F++  TYTF   +  +    W
Sbjct:  262 MRLGLVAKGFARTVLGFISRLVNEMHWSFGTDDREELPHIVAPLWLAADRMVVTPEGEEPPPLGQEIPESDEDRAKRRSAQGDFGDFTVGPTYTFVIQTSNVDFTKW 368          
BLAST of jgi.p|Trimin1|152996 vs. uniprot
Match: A0A7S4NAE6_9STRA (Hypothetical protein n=3 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NAE6_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 2.550e-17
Identity = 45/108 (41.67%), Postives = 62/108 (57.41%), Query Frame = 1
Query:    1 MKLGLVTMGLCRAMLSFAQR-LNRNMHYSFGSKDNSELPHISFPLVTNVDTLLVTPQGEAPPPLGQRFVEDPVLKKERMSGKAGPASFSLDCTYTFSFHSMYLSLPAW 321
            MKLG V+ GLC  +L    R ++ +MHY+FG     E PHI F   +  D L+VT +G+ PPP+G  F E      +R S  +GP  +    T++ SF+SMYL LP W
Sbjct:    1 MKLGFVSKGLCNVLLKMMTRVISADMHYAFGDDGMEESPHIVFTAWSFFDRLVVTEEGDEPPPMGDPFPESDKAASKRKSS-SGPGEWRSGATFSMSFNSMYLDLPTW 107          
BLAST of jgi.p|Trimin1|152996 vs. uniprot
Match: A0A836C9V5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9V5_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.510e-16
Identity = 42/110 (38.18%), Postives = 60/110 (54.55%), Query Frame = 1
Query:   10 GLVTMGLCRAMLSFAQRLNRNMHYSFGSKD------NSELPHISFPLVTNVDTLLVTPQGEAPPPLGQRFVEDPVLKKERMSGKAGPASFSLDCTYTFSFHSMYLSLPAW 321
            GLVT  L   ++ FA +L + +HYSFG K       ++E  H +FPL   +D +++TP GEA PPLG    E    ++ R +GK    +F  D TYT +FHS  +    W
Sbjct:    1 GLVTQALSSVVMRFASQLVKVLHYSFGDKKVPEDSGDAEPMHATFPLFRVMDRIVITPDGEAVPPLGVMIDEPDEERQARRAGKTPEPAFRTDATYTMAFHSGMVDFQKW 110          
BLAST of jgi.p|Trimin1|152996 vs. uniprot
Match: A0A0M0JZC7_9EUKA (DUF547 domain-containing protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JZC7_9EUKA)

HSP 1 Score: 74.7 bits (182), Expect = 2.120e-13
Identity = 47/116 (40.52%), Postives = 65/116 (56.03%), Query Frame = 1
Query:    1 MKLGLVTMGLCRAMLSFAQRLNRNMHYSFGS---KDNSELPHISFPLVTNVDTLLVTPQGEAPPPLGQ------RFVEDPVLKKERMSGKAGPASFSLDCTYTFSFHSMYLSLPAW 321
            M+LGL+T G+ R +LS    +   +H+SFG+     N+E PHI   L+   D ++VTP GEAPPPLG         +ED   +K R   + G   F +  TYTFSF++  L LP W
Sbjct:   39 MQLGLLTKGVARGVLSLISAV-LPIHFSFGNPSLSQNAERPHIVSNLMIAADRMIVTPAGEAPPPLGTDATFDLEDLEDNAARKRRR--QLGAIPFEVGPTYTFSFNTSNLDLPTW 151          
BLAST of jgi.p|Trimin1|152996 vs. uniprot
Match: A0A7S4L1L8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4L1L8_9EUKA)

HSP 1 Score: 65.5 bits (158), Expect = 5.900e-11
Identity = 34/91 (37.36%), Postives = 57/91 (62.64%), Query Frame = 1
Query:   40 MLSFAQRLNRNMHYSFGSKDNSELPHISFPLVTNVDTLLVTPQGEAPPPLGQRFVEDPVLKKERMSGKAGPASFSLDCTYTFSFHSMYLSL 312
            +L   +R+  + H+SFG+K+  E PHI  PLV+ +D+ +VTP+GE  P LG   + +   +++ + G+     F +  TYT SFHSMY+++
Sbjct:   10 ILQVLKRMVPDSHHSFGAKN--ETPHIVLPLVSAIDSFIVTPEGEESPSLGVESLPESNDQEDYIQGRE---KFKIGPTYTISFHSMYINV 95          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|152996 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A836CIV3_9STRA1.310e-72100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
D8LMK0_ECTSI3.740e-3254.95DUF547 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KCR6_9PHAE6.970e-3255.86DUF547 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A836CF94_9STRA3.630e-2761.29Chromate transporter-domain-containing protein n=1... [more]
A0A061RNH2_9CHLO8.010e-2650.47PH domain-containing protein n=2 Tax=Tetraselmis s... [more]
A0A7R9Y8C6_9STRA3.980e-1842.06Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S4NAE6_9STRA2.550e-1741.67Hypothetical protein n=3 Tax=Odontella aurita TaxI... [more]
A0A836C9V5_9STRA1.510e-1638.18Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A0M0JZC7_9EUKA2.120e-1340.52DUF547 domain-containing protein n=1 Tax=Chrysochr... [more]
A0A7S4L1L8_9EUKA5.900e-1137.36Hypothetical protein (Fragment) n=1 Tax=Paramoeba ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_222contigContig_222:71525..73187 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|152996|gw1.222.48.1
DescriptionProtein of unknown function, DUF547
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs28IMD@1|root,2R35N@2759|Eukaryota
Evalue7.81e-18
Seed ortholog112098.XP_008611617.1
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionDomain of unknown function DUF547
Ec32 orthologEc-05_003020.1
TranscriptId153318
TrackFilteredModels1
ProteinId152996
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|152996gene_17442Tribonema minus UTEX_B_3156 geneContig_222 71525..73187 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17442_1exon_17442_1Tribonema minus UTEX_B_3156 exonContig_222 71525..71607 +
exon_17442_2exon_17442_2Tribonema minus UTEX_B_3156 exonContig_222 72254..72451 +
exon_17442_3exon_17442_3Tribonema minus UTEX_B_3156 exonContig_222 73148..73187 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17442CDS_17442Tribonema minus UTEX_B_3156 CDSContig_222 71525..71607 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|152996Trimin1|152996|gw1.222.48.1Tribonema minus UTEX_B_3156 polypeptideContig_222 71525..73187 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17442 ID=mRNA_17442|Name=jgi.p|Trimin1|152996|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=321bp|location=Sequence derived from alignment at Contig_222:71525..73187+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCTGGGGCTGGTGACGATGGGGCTGTGCCGAGCGATGCTGTCCTT
CGCGCAGCGGCTCAACCGCAACATGCACTACAGCTTTGGCAGCAAGGACA
ACTCGGAGCTGCCCCACATCAGCTTCCCCCTGGTCACCAACGTCGACACG
CTGCTGGTGACGCCGCAGGGCGAGGCGCCGCCGCCGCTGGGCCAGCGCTT
TGTTGAGGATCCTGTGTTGAAGAAGGAGAGGATGAGCGGGAAGGCGGGGC
CCGCGTCGTTCAGCCTCGACTGCACCTACACCTTCAGCTTCCACAGCATG
TACCTCTCGCTGCCGGCGTGG
back to top

protein sequence of jgi.p|Trimin1|152996

>Trimin1|152996|gw1.222.48.1 ID=Trimin1|152996|gw1.222.48.1|Name=jgi.p|Trimin1|152996|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=107bp
MKLGLVTMGLCRAMLSFAQRLNRNMHYSFGSKDNSELPHISFPLVTNVDT
LLVTPQGEAPPPLGQRFVEDPVLKKERMSGKAGPASFSLDCTYTFSFHSM
YLSLPAW
back to top

mRNA from alignment at Contig_222:71525..73187+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17442 ID=mRNA_17442|Name=jgi.p|Trimin1|152996|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1663bp|location=Sequence derived from alignment at Contig_222:71525..73187+ (Tribonema minus UTEX_B_3156 )
ATGAAGCTGGGGCTGGTGACGATGGGGCTGTGCCGAGCGATGCTGTCCTT CGCGCAGCGGCTCAACCGCAACATGCACTACAGGTGAGGGGGGCGGCGCC GCGCTCTAAACTTCAAGTGTGCCCTGTTGCTTGCAACGACAGAGAAGCTG GGACAGGTGATGGTTGGGGCTGCGTCGTCATTCACCCAGCACCTCAGCAC TAGTTTGCGCAGCTGGGGCGATGATAGCACAAGGCTGAGGAACAAGGCTG AGGAACATGCAATCCTACCATTTGAACTGAGAAGGGAGTCGGAAGTGGTG ATGTGGGGCTGTGCTGAGAGATGCTGTCATTTGCAAAGTAGCTCAACTGC AATATGCACTACAGGTGAAGGGCAGTGCCGCGCTTGAACTTCAAGTGTGA TCTGGTCTTACAGTGACAGAGAAGCTGGGACAGGGGACGATTGTGTCTCA CGCCCTTTCCCCCTGCAGCCCTCACCCTTCAACAGCGGATGTCCATGCAC TTTGCGCCCTTGCCCCCAGCGGCATTACCGCCCTATGTGTCATGGAGGTT GCCTCACATGACGAATCTTGAGGTACCCCCACTGAAACTTGAACACGTGT GACACTCCGACCTTGACAATTCAACTCCGGCATTCACATAAAGTTCTGTC TCCCTGCCACTCTTATCAACAAGCCCCTCCCCCCCCTCCCCCCCCCCCCC CATGCGTCCCCCTCTCTCCCCTGCCGCAGCTTTGGCAGCAAGGACAACTC GGAGCTGCCCCACATCAGCTTCCCCCTGGTCACCAACGTCGACACGCTGC TGGTGACGCCGCAGGGCGAGGCGCCGCCGCCGCTGGGCCAGCGCTTTGTT GAGGATCCTGTGTTGAAGAAGGAGAGGATGAGCGGGAAGGCGGGGCCCGC GTCGTTCAGCCTCGACTGCACCTACACGTGAGCGCTGTCGCATTGTTGAA GTTGATGCTGATGTGATGCGGAAGTTTGGCGTTGAAGTTTGTGTCACTTT GTAATAATTTGTGCTGCAGTTGAGATGTACACGCCCACTGAGTGCGATCA CTCAGTGTTGCTGATTGCATGCACTTGCGCTGATGAGTTGAAGCTGGCGC ACACTTACAGGGTGCGATGACGGCATGCCGCCGATCGCCTGCACTGCAGC AGGTCTGCTACTTGGCCAGCGTATCGGCCGCTGCATGCCAGCAACAGCGG TTCAGGGTGGCAAGAGCGTAGGGGTGGAGTATGGAGGGCGCTTGGTCGTA TAGGCTTAGTGGCATTGCTCAGTGAAGGCCATCCCTAAGTCTCGCAATAA GCTTTGTTGCATGTCACTTATGTTACACTTTACGTGGGGCATCCCACATG ACGAAGGAGGGGATGGTCCTGTCCGCGCCCAATCTTCCCACCTACCTCTT CACCTACTGAGCGCTTCAGGATTCTCCACCAACCTGCAGGTTGGCAGCAT GCATCGGACACGGTCCGCCATTGCATGCAGCACCGATCTACTCGAAGCAT AATCCAAGCACTCACAAACACACTCCAGCACTTATATATGAACGCCTCCA ACCCCTGCGCTGATGCACACACCCCCGCGCCGCCGCCGCGCGCACCACCG CCGCTGCCTCCTTGCGCGCGCAGCTTCAGCTTCCACAGCATGTACCTCTC GCTGCCGGCGTGG
back to top

Coding sequence (CDS) from alignment at Contig_222:71525..73187+

>mRNA_17442 ID=mRNA_17442|Name=jgi.p|Trimin1|152996|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=321bp|location=Sequence derived from alignment at Contig_222:71525..73187+ (Tribonema minus UTEX_B_3156 )
ATGAAGCTGGGGCTGGTGACGATGGGGCTGTGCCGAGCGATGCTGTCCTT
CGCGCAGCGGCTCAACCGCAACATGCACTACAGCTTTGGCAGCAAGGACA
ACTCGGAGCTGCCCCACATCAGCTTCCCCCTGGTCACCAACGTCGACACG
CTGCTGGTGACGCCGCAGGGCGAGGCGCCGCCGCCGCTGGGCCAGCGCTT
TGTTGAGGATCCTGTGTTGAAGAAGGAGAGGATGAGCGGGAAGGCGGGGC
CCGCGTCGTTCAGCCTCGACTGCACCTACACCTTCAGCTTCCACAGCATG
TACCTCTCGCTGCCGGCGTGG
back to top