mRNA_18052 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|354187
Unique Name	mRNA_18052
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|354187 vs. uniprot
Match: A0A836CH96_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH96_9STRA)

HSP 1 Score: 279 bits (713), Expect = 8.310e-95
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 1

Query:    1 MSRRRARGDDGDLLTRLQGKVEEAQELITVGACSMAEHNERNAATELGILLVESLEGEQGETGSDPEAAMPSDKGLVRLVAIKDAMSVSTEQIAFLKHAVRYASGSQEPQAQVLRLSLARSYEEMDDIGPAARQYAIMGEVPNYLSL 441
            MSRRRARGDDGDLLTRLQGKVEEAQELITVGACSMAEHNERNAATELGILLVESLEGEQGETGSDPEAAMPSDKGLVRLVAIKDAMSVSTEQIAFLKHAVRYASGSQEPQAQVLRLSLARSYEEMDDIGPAARQYAIMGEVPNYLSL
Sbjct:    1 MSRRRARGDDGDLLTRLQGKVEEAQELITVGACSMAEHNERNAATELGILLVESLEGEQGETGSDPEAAMPSDKGLVRLVAIKDAMSVSTEQIAFLKHAVRYASGSQEPQAQVLRLSLARSYEEMDDIGPAARQYAIMGEVPNYLSL 147

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BLAST of jgi.p|Trimin1|354187 vs. uniprot
Match: D7G636_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G636_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 1.550e-13
Identity = 49/130 (37.69%), Postives = 75/130 (57.69%), Query Frame = 1

Query:   52 QGKVEEAQELITVGACSMAEHNERNAATELGILLVESLEGEQGETGSDPEAAMPSDKGLVRLVAIKDAMSVSTEQIAFLKHAVRYASGSQEPQAQVLRLSLARSYEEMDDIGPAARQYAIMGEVPNYLSL 441
            QG++++A+EL+T GA +M++ NE NAATELG+L+V S E    E G + + A      L +L  +  AM+   E   FLK A+R+   ++   A  LRL +ARS     ++  AAR +A+ G    Y +L
Sbjct:   44 QGRLDDAEELLTAGAIAMSKENELNAATELGLLIVTSFE----ENGREVDEAR-----LSQLKRVAVAMTPGVEMSEFLKRAIRWTRHTKTEAAFELRLIMARSAVTTGNLAEAARYFAVSGCPTEYSAL 164

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|354187 vs. uniprot

BLAST of jgi.p|Trimin1|354187 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A836CH96_9STRA	8.310e-95	100.00	Uncharacterized protein (Fragment) n=1 Tax=Tribone...	[more]
D7G636_ECTSI	1.550e-13	37.69	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_215	contig	Contig_215:124789..127951 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|354187\|estExt_Genemark1.C_Ctg_2150013
GOs	GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006508,GO:0006605,GO:0006612,GO:0006620,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006996,GO:0007029,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010033,GO:0010243,GO:0010256,GO:0010498,GO:0015031,GO:0015833,GO:0016043,GO:0019538,GO:0030163,GO:0031647,GO:0031974,GO:0031981,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034613,GO:0034976,GO:0036503,GO:0036506,GO:0042221,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045048,GO:0045184,GO:0045185,GO:0046907,GO:0050896,GO:0051087,GO:0051179,GO:0051205,GO:0051220,GO:0051234,GO:0051235,GO:0051603,GO:0051641,GO:0051649,GO:0051716,GO:0061024,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071816,GO:0071818,GO:0071840,GO:0072379,GO:0072380,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1904378
Preferred name	GET4
Description	protein insertion into ER membrane
COG category	G
Max annot lvl	2759\|Eukaryota
EggNOG OGs	KOG3024@1\|root,KOG3024@2759\|Eukaryota
Evalue	2.54e-14
Seed ortholog	2880.D7G636
Hectar predicted targeting category	other localisation
Ec32 ortholog description	Uncharacterised protein family UPF0363
Ec32 ortholog	Ec-11_004990.1
TranscriptId	354509
Track	FilteredModels1
ProteinId	354187

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|354187	gene_18052	Tribonema minus UTEX_B_3156	gene	Contig_215 124789..127951 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|354187	Trimin1\|354187\|estExt_Genemark1.C_Ctg_2150013	Tribonema minus UTEX_B_3156	polypeptide	Contig_215 124789..127950 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_18052_1	exon_18052_1	Tribonema minus UTEX_B_3156	exon	Contig_215 124789..124842 +
exon_18052_2	exon_18052_2	Tribonema minus UTEX_B_3156	exon	Contig_215 125434..125499 +
exon_18052_3	exon_18052_3	Tribonema minus UTEX_B_3156	exon	Contig_215 126119..126289 +
exon_18052_4	exon_18052_4	Tribonema minus UTEX_B_3156	exon	Contig_215 126746..126824 +
exon_18052_5	exon_18052_5	Tribonema minus UTEX_B_3156	exon	Contig_215 127880..127951 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_18052	CDS_18052	Tribonema minus UTEX_B_3156	CDS	Contig_215 124789..124842 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_18052	UTR3_18052	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_215 127951..127951 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_215:124789..127951+
coding sequence from alignment at Contig_215:124789..127951+

spliced messenger RNA

>mRNA_18052 ID=mRNA_18052|Name=jgi.p|Trimin1|354187|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=442bp|location=Sequence derived from alignment at Contig_215:124789..127951+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCCGAAGGCGTGCGCGCGGTGACGACGGCGATCTGCTTACAAGGCT
GCAGGGGAAGGTTGAGGAGGCGCAGGAGCTGATAACGGTGGGCGCGTGCT
CCATGGCCGAACACAATGAAAGAAACGCGGCCACGGAATTGGGCATTCTG
TTGGTTGAGTCGCTAGAGGGCGAACAGGGTGAGACAGGCAGCGATCCTGA
AGCTGCAATGCCAAGTGACAAGGGTCTGGTGCGGTTGGTGGCCATCAAAG
ACGCCATGTCGGTGTCCACGGAACAGATTGCCTTCCTAAAGCACGCCGTG
CGCTACGCGTCGGGGAGCCAGGAGCCGCAGGCGCAGGTGCTGCGACTGAG
TCTTGCGCGCTCATATGAAGAAATGGATGACATTGGGCCAGCTGCGCGCC
AGTACGCAATTATGGGGGAAGTGCCGAATTACCTGTCTTTAC

protein sequence of jgi.p|Trimin1|354187

>Trimin1|354187|estExt_Genemark1.C_Ctg_2150013 ID=Trimin1|354187|estExt_Genemark1.C_Ctg_2150013|Name=jgi.p|Trimin1|354187|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=147bp
MSRRRARGDDGDLLTRLQGKVEEAQELITVGACSMAEHNERNAATELGIL
LVESLEGEQGETGSDPEAAMPSDKGLVRLVAIKDAMSVSTEQIAFLKHAV
RYASGSQEPQAQVLRLSLARSYEEMDDIGPAARQYAIMGEVPNYLSL

mRNA from alignment at Contig_215:124789..127951+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_18052 ID=mRNA_18052|Name=jgi.p|Trimin1|354187|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3163bp|location=Sequence derived from alignment at Contig_215:124789..127951+ (Tribonema minus UTEX_B_3156 )
ATGTCCCGAAGGCGTGCGCGCGGTGACGACGGCGATCTGCTTACAAGGCT
GCAGGTGCGGACGACGATCTTCTCTTTCTGTGCTGCACCTGTTGACATGC
TTTGGTTTTGCACCCGAATTGCTGTACATCGTGCCATCAAATTGCTGCTA
ATTCCTAGCTGGCGTCTAAGCAAGACGTGGCAGCTGATGAGAATAACATC
TCGCTCGCAAAGATATGATGGCATTCGAATAAATGTCGAAAGATTGACCA
TGAAATGGTGTTGGTAGGCACGGATCGCTGAAGGGGACTACTACGAGGCG
TTGCAGCTGTACAAGACCAGCTATGCGAGGTTATGGTGAGTGTGAGTAGA
TTTGGCTTGTGACATGCACCAGCGCCACGCGCAGCATCGTCTTGATGTTG
TTGGTGAACCCTGCAGGCAACCAGCTGCATGCAAGTGTGTGTGCGCTGTG
CACTGCGCCTCACCATGTAGACATGCATGCTAGCTGAATCTGCCTGGCAT
GGCTGGTGCAGCGAGGCTTGTTACGAATGCTGCAGTTGCAACACCGACTC
CTCAGACCTGACTGCAGTGACTGTTGCTACCCTCAAAGAATGCTGCTACT
GTATGCTGATGATGATTACACTGTTTTTTGTATGGCAGCGCTCAGGGGAA
GGTTGAGGAGGCGCAGGAGCTGATAACGGTGGGCGCGTGCTCCATGGCCG
AACACAATGAAGTGAGTGAGTGAGTGAATGAGTGAGTGAGTGGTTGATGT
GTCGTCATCGATTGTCGTAGTGGCAGAGGGACATGCAGTCCAGAAACAAG
CTGTGTGCCTGGTGCATGCTGCGTCAGATGATGCGCGTAAGCGACAAACA
GATGCAGGGTTGTGGGTCGTTACATTCAGCAGAGCAGTGCTGCTGAAACG
TCGCTGTATGGTATGTATGTATGATGGAGGACGCTAGCATCATTACCTAC
CCATTGCTGCGCCGTCAGCCACAGCAGCGATTGATTCGATGCGATTGCGG
TCATCAGTGACTCGGTGTATCCGCTTTGAGCACCGCATGCAGTTGCACCT
GGTGGCTGTTGTACGAGGAACTGCTGGCATGGCCTAACACGAGTACATGC
TGCATGTACTGGCCCGTTGAACTTCAACCCCAAGCACGCCCATGATCCGT
GGGCGCGTGTGCATTTTCTACAGGACAAACATATTGACACCTCCTCGAAA
CTCACAGATAACTCGCTTACATTTGCGGGAGCCACTCGAGTGTCCTGTGC
TAAAAGGGGGACAAAACTGTGCTCGCATCGATAGGGGCCTCACCACTCAC
ATGTGCTTACCCTCTTCTGTGCACATGCAGAGAAACGCGGCCACGGAATT
GGGCATTCTGTTGGTTGAGTCGCTAGAGGGCGAACAGGGTGAGACAGGCA
GCGATCCTGAAGCTGCAATGCCAAGTGACAAGGGTCTGGTGCGGTTGGTG
GCCATCAAAGACGCCATGTCGGTGTCCACGGAACAGATTGCCTTCCTAAA
GGTGCGTGAATACACGATGCACATGCATACGTTGGTGGTGGATTTCAGCC
AGTATGACATTGTAACAAGTGCCGTGGGACCGATCTAGTAAAGTGTCATC
ATGTGACTTGCACGCTGCATTTTCAGAAGACTCGCGGGGAATCGTGTGTG
GGCAGGCAGGAAATGACACGCCTGGTGGTGTCGCCACATTACGGCTAGGG
CTAGGGCCAGATTTAAGGTTGGGGTTAGGGTTAGCCTCCCGCAGAGCAGA
TTATCTTCTGTGTGTGTCGTGCTTCAACCCGAACACTGCGTGCTTGGCTT
TGCTTGCATCACGGCAGCTCAACTCGAAGGAGGCCTGTAACAAACCACCA
CGCTACCTCAGCCCAAGTTCCTGGGAAGCAGGCATGCCACACATGTCAAG
GATAGCTGGCCTTTGATACTGAACGCAGCGTTGTGACATCTGTTTGTGTC
GCGACAGCACGCCGTGCGCTACGCGTCGGGGAGCCAGGAGCCGCAGGCGC
AGGTGCTGCGACTGAGTCTTGCGCGCTCATATGAAGGTCCGTTGGGGGGT
ATGTAGGTATGCTGTTTGTATGTAGGGTATGGGTAGGCATGCCGTTCCTA
TATAGCAAGCGGCGGCGTCATTGGCACCGCAACGTCACGCGTTGGTACCG
GTTTCGAGAGACTTGAGTGTCTAAGACTTTTATGTCCTGTTGTGCGGGTG
CCTGCAGAGCATGTAGGGGCGCTGCTGTTTGTGAAGCGCAAGTAGGTACT
TCAGAAATAAGGCGTGTCCGGGGTGAGGACACCATATGGGGCATCACCAT
ATGGTGCATCGGTGTCGTCAATGGTTCTCGTGCTGGATCTGGCAGCAGTT
GATGGTCTTACAACTGCGCTCAACCAGAATAGTTTCTTCTCACTACCCTC
GGTGTGACCCTCAGACTACCCTATCACCCGCAACATTGACCCGCTCAGGC
ATGTGCTGTCTGGCATTGCGTGAAGTTCTTGGCATTGCAGCGATGCGTGG
TACATGATCTGCTCCATCAATGACAATGCGTGCCTAGGATGGCTGTCTCA
ACGATGGTGGGAGTGGGTCATGATTCATCACCGCTCAGCAGCTGTTGCAG
CCATATGTAAATCCTGGCCCAGTGGCCCAGTTGCGACATTGCAGCACGCC
TGTTTGCAGCATGTTGATTTCGCCGTGTGAATGCTTGCGCCGGCAATGCA
CCCTGTCACGAATTACCGCGTCGATGATAATGCATGCCATGATTGTTATA
TTGCTCAGCAGCTGTCGCAGCGGTCAGTACTGCTGGGCTAACGTATGCAG
CATGCCACTTGACAGCTGCTGAATCACGTGGGTTCATGGCGCTTAGACTG
CAATGAATCTGCACACTGCCTTGCCTAACGCCGCAGCAACAGCAGCACTT
GATTTTTGTCTTGCACAGCTGTACTCGCCATTTCGTTTTGGTGTAACCCT
CGCCCCCAAAAGTACTCAAATGCTCACCCTACCAACCCAGTTCTATTCTT
TATCGTAATCGTATCCTTGGTGTCCTCACCGTAATATCACCTTTTCAAAT
GCACTATGTGCTGCTTCACTTTCTGATTGTGACATTTTCAGAAATGGATG
ACATTGGGCCAGCTGCGCGCCAGTACGCAATTATGGGGGAAGTGCCGAAT
TACCTGTCTTTAC

Coding sequence (CDS) from alignment at Contig_215:124789..127951+

>mRNA_18052 ID=mRNA_18052|Name=jgi.p|Trimin1|354187|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=441bp|location=Sequence derived from alignment at Contig_215:124789..127951+ (Tribonema minus UTEX_B_3156 )
ATGTCCCGAAGGCGTGCGCGCGGTGACGACGGCGATCTGCTTACAAGGCT
GCAGGGGAAGGTTGAGGAGGCGCAGGAGCTGATAACGGTGGGCGCGTGCT
CCATGGCCGAACACAATGAAAGAAACGCGGCCACGGAATTGGGCATTCTG
TTGGTTGAGTCGCTAGAGGGCGAACAGGGTGAGACAGGCAGCGATCCTGA
AGCTGCAATGCCAAGTGACAAGGGTCTGGTGCGGTTGGTGGCCATCAAAG
ACGCCATGTCGGTGTCCACGGAACAGATTGCCTTCCTAAAGCACGCCGTG
CGCTACGCGTCGGGGAGCCAGGAGCCGCAGGCGCAGGTGCTGCGACTGAG
TCTTGCGCGCTCATATGAAGAAATGGATGACATTGGGCCAGCTGCGCGCC
AGTACGCAATTATGGGGGAAGTGCCGAATTACCTGTCTTTA