Trimin1|354187|estExt_Genemark1.C_Ctg_2150013 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|354187
Unique NameTrimin1|354187|estExt_Genemark1.C_Ctg_2150013
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length147
Homology
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BLAST of jgi.p|Trimin1|354187 vs. uniprot
Match: A0A836CH96_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH96_9STRA)

HSP 1 Score: 279 bits (713), Expect = 8.310e-95
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0 
Query:    1 MSRRRARGDDGDLLTRLQGKVEEAQELITVGACSMAEHNERNAATELGILLVESLEGEQGETGSDPEAAMPSDKGLVRLVAIKDAMSVSTEQIAFLKHAVRYASGSQEPQAQVLRLSLARSYEEMDDIGPAARQYAIMGEVPNYLSL 147
            MSRRRARGDDGDLLTRLQGKVEEAQELITVGACSMAEHNERNAATELGILLVESLEGEQGETGSDPEAAMPSDKGLVRLVAIKDAMSVSTEQIAFLKHAVRYASGSQEPQAQVLRLSLARSYEEMDDIGPAARQYAIMGEVPNYLSL
Sbjct:    1 MSRRRARGDDGDLLTRLQGKVEEAQELITVGACSMAEHNERNAATELGILLVESLEGEQGETGSDPEAAMPSDKGLVRLVAIKDAMSVSTEQIAFLKHAVRYASGSQEPQAQVLRLSLARSYEEMDDIGPAARQYAIMGEVPNYLSL 147
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BLAST of jgi.p|Trimin1|354187 vs. uniprot
Match: D7G636_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G636_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 1.550e-13
Identity = 49/130 (37.69%), Postives = 75/130 (57.69%), Query Frame = 0 
Query:   18 QGKVEEAQELITVGACSMAEHNERNAATELGILLVESLEGEQGETGSDPEAAMPSDKGLVRLVAIKDAMSVSTEQIAFLKHAVRYASGSQEPQAQVLRLSLARSYEEMDDIGPAARQYAIMGEVPNYLSL 147
            QG++++A+EL+T GA +M++ NE NAATELG+L+V S E    E G + + A      L +L  +  AM+   E   FLK A+R+   ++   A  LRL +ARS     ++  AAR +A+ G    Y +L
Sbjct:   44 QGRLDDAEELLTAGAIAMSKENELNAATELGLLIVTSFE----ENGREVDEAR-----LSQLKRVAVAMTPGVEMSEFLKRAIRWTRHTKTEAAFELRLIMARSAVTTGNLAEAARYFAVSGCPTEYSAL 164
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354187 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CH96_9STRA8.310e-95100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
D7G636_ECTSI1.550e-1337.69Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 5..146
e-value: 1.4E-7
score: 33.3
IPR007317Golgi to ER traffic protein 4PFAMPF04190GET4coord: 18..139
e-value: 1.3E-7
score: 31.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_215contigContig_215:124789..127950 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354187mRNA_18052Tribonema minus UTEX_B_3156 mRNAContig_215 124789..127951 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|354187|estExt_Genemark1.C_Ctg_2150013 ID=Trimin1|354187|estExt_Genemark1.C_Ctg_2150013|Name=jgi.p|Trimin1|354187|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=147bp
MSRRRARGDDGDLLTRLQGKVEEAQELITVGACSMAEHNERNAATELGIL
LVESLEGEQGETGSDPEAAMPSDKGLVRLVAIKDAMSVSTEQIAFLKHAV
RYASGSQEPQAQVLRLSLARSYEEMDDIGPAARQYAIMGEVPNYLSL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR007317GET4