Trimin1|354177|estExt_Genemark1.C_Ctg_2140017 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|354177
Unique NameTrimin1|354177|estExt_Genemark1.C_Ctg_2140017
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length299
Homology
BLAST of jgi.p|Trimin1|354177 vs. uniprot
Match: A0A835Z8Q1_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Q1_9STRA)

HSP 1 Score: 540 bits (1392), Expect = 2.690e-193
Identity = 298/298 (100.00%), Postives = 298/298 (100.00%), Query Frame = 0
Query:    1 MWGRPVPGASALSAFGCLLLLLRCSGXXXXXXXXXXXXXXXXXXXCGGGTDAAVSFIYLAFIGVFTLLGCCLWGLARRAHHALAARAAMLRVHQLPHFRWGVAPACARGGSTVGGSGXXXXGAEDGVEPSAKCPLCEGAGCAKAAPECSVCLSSFEAGEEVRQLPCKHLYHKACIDKWFESQKDTCPLCMVPVWEQRIAPRGGRRRARAPPRAATARAALPSNPTFTTATISKSGSSSQAAIRMVMSSRVWAAFLLRLRLLRWSAPRRTPQPPLPRCKIVGPRRSGALPNRQRQLRTP 298
            MWGRPVPGASALSAFGCLLLLLRCSGXXXXXXXXXXXXXXXXXXXCGGGTDAAVSFIYLAFIGVFTLLGCCLWGLARRAHHALAARAAMLRVHQLPHFRWGVAPACARGGSTVGGSGXXXXGAEDGVEPSAKCPLCEGAGCAKAAPECSVCLSSFEAGEEVRQLPCKHLYHKACIDKWFESQKDTCPLCMVPVWEQRIAPRGGRRRARAPPRAATARAALPSNPTFTTATISKSGSSSQAAIRMVMSSRVWAAFLLRLRLLRWSAPRRTPQPPLPRCKIVGPRRSGALPNRQRQLRTP
Sbjct:    1 MWGRPVPGASALSAFGCLLLLLRCSGXXXXXXXXXXXXXXXXXXXCGGGTDAAVSFIYLAFIGVFTLLGCCLWGLARRAHHALAARAAMLRVHQLPHFRWGVAPACARGGSTVGGSGXXXXGAEDGVEPSAKCPLCEGAGCAKAAPECSVCLSSFEAGEEVRQLPCKHLYHKACIDKWFESQKDTCPLCMVPVWEQRIAPRGGRRRARAPPRAATARAALPSNPTFTTATISKSGSSSQAAIRMVMSSRVWAAFLLRLRLLRWSAPRRTPQPPLPRCKIVGPRRSGALPNRQRQLRTP 298          
BLAST of jgi.p|Trimin1|354177 vs. uniprot
Match: A0A835YWR1_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWR1_9STRA)

HSP 1 Score: 139 bits (350), Expect = 1.750e-36
Identity = 78/148 (52.70%), Postives = 93/148 (62.84%), Query Frame = 0
Query:   50 TDAA-VSFIYLAFIGVFTLLGCCLWGLARRAHHALAARAAMLRVHQLPHFRWGVAPACARG-GSTVGGSGXXXXGAEDGVEPSAKCPLCEGAGCAKAAPECSVCLSSFEAGEEVRQLPCKHLYHKACIDKWFESQKDTCPLCMVPVWE 195
            +DA+ +  +YL    V TL G C W    R H    ++ A L V   P ++WGVAPAC  G G+  GG G    G E GV  S KCPLC GAGCA    +CSVCLS+FEA +EVRQLPCKHLYHK CIDKW +S K+TCPLC    W+
Sbjct:   26 SDASYLPLMYLPIFAVVTLAGACAWC---RWH----SKNAPLHVRP-PSYQWGVAPACEAGEGAGAGGEG----GGERGVVVSEKCPLCVGAGCASLPSDCSVCLSAFEAPQEVRQLPCKHLYHKECIDKWLDSGKETCPLCAACAWQ 161          
BLAST of jgi.p|Trimin1|354177 vs. uniprot
Match: A0A836CMX2_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMX2_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 7.020e-19
Identity = 40/57 (70.18%), Postives = 46/57 (80.70%), Query Frame = 0
Query:  138 GAGCAKAAPECSVCLSSFEAGEEVRQLPCKHLYHKACIDKWFESQKDTCPLCMVPVW 194
            GAGC   + EC VCLS+FE G+EVR+LPCKHLYH ACID W E+ KDTCPLC+ PVW
Sbjct:  170 GAGCHLVSRECVVCLSNFETGQEVRRLPCKHLYHAACIDHWLETGKDTCPLCVGPVW 226          
BLAST of jgi.p|Trimin1|354177 vs. uniprot
Match: A0A151U8U4_CAJCA (E3 ubiquitin-protein ligase At1g63170 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151U8U4_CAJCA)

HSP 1 Score: 75.5 bits (184), Expect = 2.520e-13
Identity = 28/43 (65.12%), Postives = 35/43 (81.40%), Query Frame = 0
Query:  147 ECSVCLSSFEAGEEVRQLPCKHLYHKACIDKWFESQKDTCPLC 189
            EC VCLS+FEA +EV QLPCKH +H+ C+DKWF ++  TCPLC
Sbjct:   83 ECCVCLSAFEANQEVSQLPCKHFFHRGCLDKWFRNKHATCPLC 125          
BLAST of jgi.p|Trimin1|354177 vs. uniprot
Match: I1SV93_AVIMR (RING-H2 type zinc finger n=1 Tax=Avicennia marina TaxID=82927 RepID=I1SV93_AVIMR)

HSP 1 Score: 75.5 bits (184), Expect = 4.190e-13
Identity = 45/104 (43.27%), Postives = 53/104 (50.96%), Query Frame = 0
Query:   86 RAAMLRVHQLPHFRWGVAPACARGGSTVGGSGXXXXGAEDGVEPSAKCPLCEGAGCAKAAPECSVCLSSFEAGEEVRQLPCKHLYHKACIDKWFESQKDTCPLC 189
            R ++ R   L   R G +P   RGGST  G G        G  P A               EC VCLS FEA EEV +L CKH +HK C+DKWF++Q  TCPLC
Sbjct:   66 RVSVTRYGSLCRDRCGCSPR-ERGGSTAAGDG--------GYWPPAV--------------ECCVCLSRFEADEEVSELSCKHFFHKGCLDKWFDNQNITCPLC 146          
BLAST of jgi.p|Trimin1|354177 vs. uniprot
Match: A0A2S0X0S1_MEDSF (Salt tunicamycin-induced RING finger protein (Fragment) n=2 Tax=Medicago TaxID=3877 RepID=A0A2S0X0S1_MEDSF)

HSP 1 Score: 75.1 bits (183), Expect = 5.940e-13
Identity = 30/61 (49.18%), Postives = 41/61 (67.21%), Query Frame = 0
Query:  131 AKCPLCEGAGCAKAAP--ECSVCLSSFEAGEEVRQLPCKHLYHKACIDKWFESQKDTCPLC 189
            A+   C    C   +P  EC VCLS FEA +EV +LPCKH +H+ C+DKWF+++  +CPLC
Sbjct:   86 ARSSSCSNGSCGWTSPMVECCVCLSGFEANQEVSELPCKHFFHRGCLDKWFDNKHSSCPLC 146          
BLAST of jgi.p|Trimin1|354177 vs. uniprot
Match: H9VMZ2_PINTA (RING-type domain-containing protein (Fragment) n=4 Tax=Pinus subgen. Pinus TaxID=139271 RepID=H9VMZ2_PINTA)

HSP 1 Score: 72.4 bits (176), Expect = 6.760e-13
Identity = 27/43 (62.79%), Postives = 34/43 (79.07%), Query Frame = 0
Query:  147 ECSVCLSSFEAGEEVRQLPCKHLYHKACIDKWFESQKDTCPLC 189
            EC+VCL  FE G E+RQLPC HL+H+ C+DKW + Q+ TCPLC
Sbjct:   14 ECAVCLCKFEEGVEIRQLPCCHLFHRPCLDKWLDHQQITCPLC 56          
BLAST of jgi.p|Trimin1|354177 vs. uniprot
Match: A0A4D8YQP3_SALSN (E3 ubiquitin-protein ligase RHA2 n=4 Tax=Salvia TaxID=21880 RepID=A0A4D8YQP3_SALSN)

HSP 1 Score: 75.1 bits (183), Expect = 7.300e-13
Identity = 30/49 (61.22%), Postives = 35/49 (71.43%), Query Frame = 0
Query:  145 APECSVCLSSFEAGEEVRQLPCKHLYHKACIDKWFESQKDTCPLCMVPV 193
            A ECSVCLS FE G+EVR+L CKH +HK C+D W +    TCPLC  PV
Sbjct:   71 AAECSVCLSPFEEGDEVRKLKCKHTFHKGCVDTWLQQDAATCPLCRRPV 119          
BLAST of jgi.p|Trimin1|354177 vs. uniprot
Match: A0A6V7PXU4_ANACO (RING-type domain-containing protein n=3 Tax=Ananas comosus TaxID=4615 RepID=A0A6V7PXU4_ANACO)

HSP 1 Score: 73.9 bits (180), Expect = 7.830e-13
Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 0
Query:  142 AKAAPECSVCLSSFEAGEEVRQLPCKHLYHKACIDKWFESQKDTCPLCMVPV 193
            A+A  EC VCLS F   E  R+LPC+HL+H+AC+D+W  S + TCPLC VP+
Sbjct:   41 AEAGEECCVCLSRFGEDEATRELPCRHLFHRACVDRWLLSCRRTCPLCRVPI 92          
BLAST of jgi.p|Trimin1|354177 vs. uniprot
Match: A0A6V7PYJ8_ANACO (RING-type domain-containing protein n=1 Tax=Ananas comosus var. bracteatus TaxID=296719 RepID=A0A6V7PYJ8_ANACO)

HSP 1 Score: 73.9 bits (180), Expect = 1.130e-12
Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 0
Query:  142 AKAAPECSVCLSSFEAGEEVRQLPCKHLYHKACIDKWFESQKDTCPLCMVPV 193
            A+A  EC VCLS F   E  R+LPC+HL+H+AC+D+W  S + TCPLC VP+
Sbjct:   42 AEAGEECCVCLSRFGEDEATRELPCRHLFHRACVDRWLLSCRRTCPLCRVPI 93          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354177 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z8Q1_9STRA2.690e-193100.00RING-type domain-containing protein n=1 Tax=Tribon... [more]
A0A835YWR1_9STRA1.750e-3652.70RING-type domain-containing protein n=1 Tax=Tribon... [more]
A0A836CMX2_9STRA7.020e-1970.18RING-type domain-containing protein n=1 Tax=Tribon... [more]
A0A151U8U4_CAJCA2.520e-1365.12E3 ubiquitin-protein ligase At1g63170 n=1 Tax=Caja... [more]
I1SV93_AVIMR4.190e-1343.27RING-H2 type zinc finger n=1 Tax=Avicennia marina ... [more]
A0A2S0X0S1_MEDSF5.940e-1349.18Salt tunicamycin-induced RING finger protein (Frag... [more]
H9VMZ2_PINTA6.760e-1362.79RING-type domain-containing protein (Fragment) n=4... [more]
A0A4D8YQP3_SALSN7.300e-1361.22E3 ubiquitin-protein ligase RHA2 n=4 Tax=Salvia Ta... [more]
A0A6V7PXU4_ANACO7.830e-1355.77RING-type domain-containing protein n=3 Tax=Ananas... [more]
A0A6V7PYJ8_ANACO1.130e-1255.77RING-type domain-containing protein n=1 Tax=Ananas... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 148..189
e-value: 9.7E-9
score: 45.0
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 147..189
e-value: 5.9E-13
score: 49.0
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 148..189
score: 12.312242
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 147..197
e-value: 1.5E-17
score: 64.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 272..298
NoneNo IPR availablePANTHERPTHR45676:SF98RING-H2 FINGER PROTEIN ATL2coord: 57..213
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..17
score: 5.0
NoneNo IPR availableCDDcd16454RING-H2_PA-TM-RINGcoord: 147..190
e-value: 1.58024E-16
score: 70.0233
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 147..196
IPR044675E3 ubiquitin-protein ligase RING1-likePANTHERPTHR45676RING-H2 FINGER PROTEIN ATL51-RELATEDcoord: 57..213

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_214contigContig_214:163143..166171 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354177mRNA_17830Tribonema minus UTEX_B_3156 mRNAContig_214 163143..166628 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|354177|estExt_Genemark1.C_Ctg_2140017 ID=Trimin1|354177|estExt_Genemark1.C_Ctg_2140017|Name=jgi.p|Trimin1|354177|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=299bp
MWGRPVPGASALSAFGCLLLLLRCSGGCAAPAAAACAAAGAAGSTCGGGT
DAAVSFIYLAFIGVFTLLGCCLWGLARRAHHALAARAAMLRVHQLPHFRW
GVAPACARGGSTVGGSGSGGGGAEDGVEPSAKCPLCEGAGCAKAAPECSV
CLSSFEAGEEVRQLPCKHLYHKACIDKWFESQKDTCPLCMVPVWEQRIAP
RGGRRRARAPPRAATARAALPSNPTFTTATISKSGSSSQAAIRMVMSSRV
WAAFLLRLRLLRWSAPRRTPQPPLPRCKIVGPRRSGALPNRQRQLRTP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR044675RING1-like