mRNA_16538 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|42356
Unique NamemRNA_16538
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|42356 vs. uniprot
Match: A0A836CJ95_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ95_9STRA)

HSP 1 Score: 693 bits (1789), Expect = 8.600e-251
Identity = 355/355 (100.00%), Postives = 355/355 (100.00%), Query Frame = 3 
Query:    3 MTKRARRPAASKDLEPIIVVKTPQPRGSNILLKKACVWCVKEKRRCGGGHPCEQCLIRDRGDECGYEQRRKSGPRARVVGPPVGKGRKRKAAAAPTPELLDADAAAPPVIDFARAVTPDLKPHNVAVVPADDSVACAKRLATAAAKGGAAQEGESCAVERQALALLEVERGFSSQSSEYDVNTEVARLYALSSMQQQSYTVVSNTAGAVDCGAGTVVDIKAIPCKYEPYSPGDDSNSGDSAGRLVEQFLLFGKEDAALVVHGIPVATDENSYAQQETGYQVPVYEMPDAAPFADFSNLCGASLTRQRSLASAVDKLDDGDRNDDDLDVSVDMSDESFYPALSPIGMSAGAKLAQR 1067
            MTKRARRPAASKDLEPIIVVKTPQPRGSNILLKKACVWCVKEKRRCGGGHPCEQCLIRDRGDECGYEQRRKSGPRARVVGPPVGKGRKRKAAAAPTPELLDADAAAPPVIDFARAVTPDLKPHNVAVVPADDSVACAKRLATAAAKGGAAQEGESCAVERQALALLEVERGFSSQSSEYDVNTEVARLYALSSMQQQSYTVVSNTAGAVDCGAGTVVDIKAIPCKYEPYSPGDDSNSGDSAGRLVEQFLLFGKEDAALVVHGIPVATDENSYAQQETGYQVPVYEMPDAAPFADFSNLCGASLTRQRSLASAVDKLDDGDRNDDDLDVSVDMSDESFYPALSPIGMSAGAKLAQR
Sbjct:    1 MTKRARRPAASKDLEPIIVVKTPQPRGSNILLKKACVWCVKEKRRCGGGHPCEQCLIRDRGDECGYEQRRKSGPRARVVGPPVGKGRKRKAAAAPTPELLDADAAAPPVIDFARAVTPDLKPHNVAVVPADDSVACAKRLATAAAKGGAAQEGESCAVERQALALLEVERGFSSQSSEYDVNTEVARLYALSSMQQQSYTVVSNTAGAVDCGAGTVVDIKAIPCKYEPYSPGDDSNSGDSAGRLVEQFLLFGKEDAALVVHGIPVATDENSYAQQETGYQVPVYEMPDAAPFADFSNLCGASLTRQRSLASAVDKLDDGDRNDDDLDVSVDMSDESFYPALSPIGMSAGAKLAQR 355
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BLAST of jgi.p|Trimin1|42356 vs. uniprot
Match: A0A836CIK1_9STRA (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIK1_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 4.390e-17
Identity = 38/50 (76.00%), Postives = 47/50 (94.00%), Query Frame = 3 
Query:   93 LLKKACVWCVKEKRRCGGGHPCEQCLIRDRGDECGYEQRRKSGPRARVVG 242
            +LKKAC+WCVKEKRRCGGGHPCEQC++R+RG++C YEQRRKSGP++R  G
Sbjct:    9 VLKKACIWCVKEKRRCGGGHPCEQCVVRERGNKCAYEQRRKSGPKSRGGG 58
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|42356 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CJ95_9STRA8.600e-251100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CIK1_9STRA4.390e-1776.00Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_211contigContig_211:118710..120683 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|42356|CE42355_156
Hectar predicted targeting categoryother localisation
TranscriptId42678
TrackFilteredModels1
ProteinId42356
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|42356gene_16538Tribonema minus UTEX_B_3156 geneContig_211 118710..120683 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16538_1exon_16538_1Tribonema minus UTEX_B_3156 exonContig_211 118710..118818 +
exon_16538_2exon_16538_2Tribonema minus UTEX_B_3156 exonContig_211 119533..120683 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_16538UTR5_16538Tribonema minus UTEX_B_3156 five_prime_UTRContig_211 118710..118711 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16538CDS_16538Tribonema minus UTEX_B_3156 CDSContig_211 118712..118818 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_16538UTR3_16538Tribonema minus UTEX_B_3156 three_prime_UTRContig_211 120494..120683 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|42356Trimin1|42356|CE42355_156Tribonema minus UTEX_B_3156 polypeptideContig_211 118712..120493 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16538 ID=mRNA_16538|Name=jgi.p|Trimin1|42356|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1260bp|location=Sequence derived from alignment at Contig_211:118710..120683+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGATGACGAAGCGAGCGAGGAGGCCCGCCGCGAGCAAGGACCTGGAGCCG
ATAATCGTAGTGAAGACGCCACAACCGCGGGGATCAAACATACTGTTGAA
GAAGGCATGCGTATGGTGTGTGAAGGAGAAACGGCGATGCGGCGGAGGCC
ATCCTTGTGAGCAGTGCCTCATCAGGGACAGAGGCGATGAGTGCGGCTAT
GAGCAGAGGCGCAAGAGCGGCCCAAGGGCCAGGGTAGTGGGGCCCCCGGT
CGGGAAGGGCCGCAAGCGCAAGGCGGCAGCAGCGCCCACACCGGAGCTGC
TCGATGCTGATGCAGCTGCTCCGCCCGTGATAGATTTCGCGCGCGCGGTG
ACGCCAGACCTCAAGCCACACAACGTGGCGGTGGTCCCCGCGGATGACTC
TGTGGCGTGTGCTAAGAGATTGGCCACTGCTGCAGCCAAGGGCGGGGCTG
CACAGGAGGGCGAAAGCTGCGCGGTGGAACGTCAGGCGCTGGCGTTGCTG
GAGGTGGAGCGCGGCTTTTCCAGCCAGTCGTCAGAGTATGATGTCAACAC
GGAAGTCGCGCGCCTGTACGCCCTCAGCAGCATGCAGCAGCAGTCGTACA
CCGTCGTCAGCAACACGGCTGGTGCTGTCGACTGCGGCGCGGGCACCGTA
GTCGACATCAAGGCGATTCCCTGCAAGTACGAGCCCTACTCTCCTGGCGA
CGACTCCAACAGCGGCGACAGCGCTGGCCGCCTCGTGGAGCAGTTTCTGC
TGTTCGGTAAAGAGGATGCTGCCCTGGTCGTCCACGGCATACCTGTAGCT
ACCGACGAGAACAGCTATGCTCAGCAAGAGACGGGGTACCAGGTGCCCGT
CTATGAGATGCCGGACGCTGCGCCGTTTGCTGACTTCAGCAACCTGTGCG
GCGCGTCGCTCACGCGCCAGCGCAGCCTGGCGTCGGCCGTGGACAAGCTG
GATGACGGCGACCGCAATGACGATGACCTCGACGTGTCTGTTGACATGAG
TGACGAGAGCTTCTACCCCGCGCTGTCCCCTATCGGGATGAGTGCGGGGG
CGAAGCTGGCGCAGCGCTGAACCCTGTGGGCAGGAGCGCCCAAGGACGCA
GTGCAGCGGCATCCCCACACTGTAGACTGTAATCCGCCCCGGTACCACCA
TCACACAGTAGCGTACGACCCCCCATACAAGAGCAACAGAAAAAGAGTGT
GTGCAGGGAAGCGGGGACAGTTTGGAATGACAGGCGAGAGCCTAATGAGT
GCAGCGCGCG
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protein sequence of jgi.p|Trimin1|42356

>Trimin1|42356|CE42355_156 ID=Trimin1|42356|CE42355_156|Name=jgi.p|Trimin1|42356|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=356bp
MTKRARRPAASKDLEPIIVVKTPQPRGSNILLKKACVWCVKEKRRCGGGH
PCEQCLIRDRGDECGYEQRRKSGPRARVVGPPVGKGRKRKAAAAPTPELL
DADAAAPPVIDFARAVTPDLKPHNVAVVPADDSVACAKRLATAAAKGGAA
QEGESCAVERQALALLEVERGFSSQSSEYDVNTEVARLYALSSMQQQSYT
VVSNTAGAVDCGAGTVVDIKAIPCKYEPYSPGDDSNSGDSAGRLVEQFLL
FGKEDAALVVHGIPVATDENSYAQQETGYQVPVYEMPDAAPFADFSNLCG
ASLTRQRSLASAVDKLDDGDRNDDDLDVSVDMSDESFYPALSPIGMSAGA
KLAQR*
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mRNA from alignment at Contig_211:118710..120683+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16538 ID=mRNA_16538|Name=jgi.p|Trimin1|42356|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1974bp|location=Sequence derived from alignment at Contig_211:118710..120683+ (Tribonema minus UTEX_B_3156 )
GGATGACGAAGCGAGCGAGGAGGCCCGCCGCGAGCAAGGACCTGGAGCCG
ATAATCGTAGTGAAGACGCCACAACCGCGGGGATCAAACATACTGTTGAA
GAAGGCATGGTAAGTTGAGTCGTTGACGCTCTGGTTGCCGCCATCGCGCT
GACGGCAGGCTACCGGACAAATTTTTCCTGTGACTTCAGTCCATTAGCCA
TCGTTTGACGTACCTGGCCCACCTCCTGATGCAGCGTGTGTCGTGCACTT
CGCCTTCTGAGTTGGTCGTTCGTGTCGGCCCCAGTTAGCTTGAGGGCATT
TTCAAGCCATCACAAAGCTGCATCAACGCAGCCTGCCTGTGGTTGCTCTA
TGACGATGCGGCCGGCCACCACCATGAAGCATTTTGGTCAGCCAAGCAAG
CTAGGGTGCATGTCGTTGACATGTCCATCTTTCAAACTTGAGTCACCCTC
GTCAGCCCTCCCCCCGGCGTATTGGCCGCTGCCGTTGAGGCGCTGCTGTG
GGTATGGCTGCATGGTGACTTGTTGTTGCTGCCACGTGAGGGTGTGTTGC
CTTCATGTTGCCAAACCTCAAGGGACATGCTGTCGGGTGATCAGACACCA
GCAGCAGAAAGCCACTCCATCCGAGTGTGTTGCTGGCAGACATTGTTTGC
GCAAGGTCTGAAAGACGTCTAATTTCAAGTGGCTGTGAGCTAATTGACGT
GGCCATCTCATCAATTGTCTGCCATGGCCTCGCATCAGATATTCGCGTGT
CTTCTGCCCTTCCCCCAGTCGCTGTTCAGCTCATGTGCTCACCTGTATCT
GATGTGTCTCTCTGTTTTCACAGCGTATGGTGTGTGAAGGAGAAACGGCG
ATGCGGCGGAGGCCATCCTTGTGAGCAGTGCCTCATCAGGGACAGAGGCG
ATGAGTGCGGCTATGAGCAGAGGCGCAAGAGCGGCCCAAGGGCCAGGGTA
GTGGGGCCCCCGGTCGGGAAGGGCCGCAAGCGCAAGGCGGCAGCAGCGCC
CACACCGGAGCTGCTCGATGCTGATGCAGCTGCTCCGCCCGTGATAGATT
TCGCGCGCGCGGTGACGCCAGACCTCAAGCCACACAACGTGGCGGTGGTC
CCCGCGGATGACTCTGTGGCGTGTGCTAAGAGATTGGCCACTGCTGCAGC
CAAGGGCGGGGCTGCACAGGAGGGCGAAAGCTGCGCGGTGGAACGTCAGG
CGCTGGCGTTGCTGGAGGTGGAGCGCGGCTTTTCCAGCCAGTCGTCAGAG
TATGATGTCAACACGGAAGTCGCGCGCCTGTACGCCCTCAGCAGCATGCA
GCAGCAGTCGTACACCGTCGTCAGCAACACGGCTGGTGCTGTCGACTGCG
GCGCGGGCACCGTAGTCGACATCAAGGCGATTCCCTGCAAGTACGAGCCC
TACTCTCCTGGCGACGACTCCAACAGCGGCGACAGCGCTGGCCGCCTCGT
GGAGCAGTTTCTGCTGTTCGGTAAAGAGGATGCTGCCCTGGTCGTCCACG
GCATACCTGTAGCTACCGACGAGAACAGCTATGCTCAGCAAGAGACGGGG
TACCAGGTGCCCGTCTATGAGATGCCGGACGCTGCGCCGTTTGCTGACTT
CAGCAACCTGTGCGGCGCGTCGCTCACGCGCCAGCGCAGCCTGGCGTCGG
CCGTGGACAAGCTGGATGACGGCGACCGCAATGACGATGACCTCGACGTG
TCTGTTGACATGAGTGACGAGAGCTTCTACCCCGCGCTGTCCCCTATCGG
GATGAGTGCGGGGGCGAAGCTGGCGCAGCGCTGAACCCTGTGGGCAGGAG
CGCCCAAGGACGCAGTGCAGCGGCATCCCCACACTGTAGACTGTAATCCG
CCCCGGTACCACCATCACACAGTAGCGTACGACCCCCCATACAAGAGCAA
CAGAAAAAGAGTGTGTGCAGGGAAGCGGGGACAGTTTGGAATGACAGGCG
AGAGCCTAATGAGTGCAGCGCGCG
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Coding sequence (CDS) from alignment at Contig_211:118710..120683+

>mRNA_16538 ID=mRNA_16538|Name=jgi.p|Trimin1|42356|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1068bp|location=Sequence derived from alignment at Contig_211:118710..120683+ (Tribonema minus UTEX_B_3156 )
ATGACGAAGCGAGCGAGGAGGCCCGCCGCGAGCAAGGACCTGGAGCCGAT
AATCGTAGTGAAGACGCCACAACCGCGGGGATCAAACATACTGTTGAAGA
AGGCATGCGTATGGTGTGTGAAGGAGAAACGGCGATGCGGCGGAGGCCAT
CCTTGTGAGCAGTGCCTCATCAGGGACAGAGGCGATGAGTGCGGCTATGA
GCAGAGGCGCAAGAGCGGCCCAAGGGCCAGGGTAGTGGGGCCCCCGGTCG
GGAAGGGCCGCAAGCGCAAGGCGGCAGCAGCGCCCACACCGGAGCTGCTC
GATGCTGATGCAGCTGCTCCGCCCGTGATAGATTTCGCGCGCGCGGTGAC
GCCAGACCTCAAGCCACACAACGTGGCGGTGGTCCCCGCGGATGACTCTG
TGGCGTGTGCTAAGAGATTGGCCACTGCTGCAGCCAAGGGCGGGGCTGCA
CAGGAGGGCGAAAGCTGCGCGGTGGAACGTCAGGCGCTGGCGTTGCTGGA
GGTGGAGCGCGGCTTTTCCAGCCAGTCGTCAGAGTATGATGTCAACACGG
AAGTCGCGCGCCTGTACGCCCTCAGCAGCATGCAGCAGCAGTCGTACACC
GTCGTCAGCAACACGGCTGGTGCTGTCGACTGCGGCGCGGGCACCGTAGT
CGACATCAAGGCGATTCCCTGCAAGTACGAGCCCTACTCTCCTGGCGACG
ACTCCAACAGCGGCGACAGCGCTGGCCGCCTCGTGGAGCAGTTTCTGCTG
TTCGGTAAAGAGGATGCTGCCCTGGTCGTCCACGGCATACCTGTAGCTAC
CGACGAGAACAGCTATGCTCAGCAAGAGACGGGGTACCAGGTGCCCGTCT
ATGAGATGCCGGACGCTGCGCCGTTTGCTGACTTCAGCAACCTGTGCGGC
GCGTCGCTCACGCGCCAGCGCAGCCTGGCGTCGGCCGTGGACAAGCTGGA
TGACGGCGACCGCAATGACGATGACCTCGACGTGTCTGTTGACATGAGTG
ACGAGAGCTTCTACCCCGCGCTGTCCCCTATCGGGATGAGTGCGGGGGCG
AAGCTGGCGCAGCGCTGA
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