Trimin1|42356|CE42355_156 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|42356
Unique NameTrimin1|42356|CE42355_156
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length356
Homology
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BLAST of jgi.p|Trimin1|42356 vs. uniprot
Match: A0A836CJ95_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ95_9STRA)

HSP 1 Score: 693 bits (1788), Expect = 9.850e-252
Identity = 355/355 (100.00%), Postives = 355/355 (100.00%), Query Frame = 0 
Query:    1 MTKRARRPAASKDLEPIIVVKTPQPRGSNILLKKACVWCVKEKRRCGGGHPCEQCLIRDRGDECGYEQRRKSGPRARVVGPPVGKGRKRKAAAAPTPELLDADAAAPPVIDFARAVTPDLKPHNVAVVPADDSVACAKRLATAAAKGGAAQEGESCAVERQALALLEVERGFSSQSSEYDVNTEVARLYALSSMQQQSYTVVSNTAGAVDCGAGTVVDIKAIPCKYEPYSPGDDSNSGDSAGRLVEQFLLFGKEDAALVVHGIPVATDENSYAQQETGYQVPVYEMPDAAPFADFSNLCGASLTRQRSLASAVDKLDDGDRNDDDLDVSVDMSDESFYPALSPIGMSAGAKLAQR 355
            MTKRARRPAASKDLEPIIVVKTPQPRGSNILLKKACVWCVKEKRRCGGGHPCEQCLIRDRGDECGYEQRRKSGPRARVVGPPVGKGRKRKAAAAPTPELLDADAAAPPVIDFARAVTPDLKPHNVAVVPADDSVACAKRLATAAAKGGAAQEGESCAVERQALALLEVERGFSSQSSEYDVNTEVARLYALSSMQQQSYTVVSNTAGAVDCGAGTVVDIKAIPCKYEPYSPGDDSNSGDSAGRLVEQFLLFGKEDAALVVHGIPVATDENSYAQQETGYQVPVYEMPDAAPFADFSNLCGASLTRQRSLASAVDKLDDGDRNDDDLDVSVDMSDESFYPALSPIGMSAGAKLAQR
Sbjct:    1 MTKRARRPAASKDLEPIIVVKTPQPRGSNILLKKACVWCVKEKRRCGGGHPCEQCLIRDRGDECGYEQRRKSGPRARVVGPPVGKGRKRKAAAAPTPELLDADAAAPPVIDFARAVTPDLKPHNVAVVPADDSVACAKRLATAAAKGGAAQEGESCAVERQALALLEVERGFSSQSSEYDVNTEVARLYALSSMQQQSYTVVSNTAGAVDCGAGTVVDIKAIPCKYEPYSPGDDSNSGDSAGRLVEQFLLFGKEDAALVVHGIPVATDENSYAQQETGYQVPVYEMPDAAPFADFSNLCGASLTRQRSLASAVDKLDDGDRNDDDLDVSVDMSDESFYPALSPIGMSAGAKLAQR 355
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BLAST of jgi.p|Trimin1|42356 vs. uniprot
Match: A0A836CIK1_9STRA (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIK1_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.980e-17
Identity = 38/50 (76.00%), Postives = 47/50 (94.00%), Query Frame = 0 
Query:   31 LLKKACVWCVKEKRRCGGGHPCEQCLIRDRGDECGYEQRRKSGPRARVVG 80
            +LKKAC+WCVKEKRRCGGGHPCEQC++R+RG++C YEQRRKSGP++R  G
Sbjct:    9 VLKKACIWCVKEKRRCGGGHPCEQCVVRERGNKCAYEQRRKSGPKSRGGG 58
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|42356 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CJ95_9STRA9.850e-252100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CIK1_9STRA1.980e-1776.00Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036864Zn(2)-C6 fungal-type DNA-binding domain superfamilyGENE3D4.10.240.10coord: 31..89
e-value: 2.1E-5
score: 26.3
IPR036864Zn(2)-C6 fungal-type DNA-binding domain superfamilySUPERFAMILY57701Zn2/Cys6 DNA-binding domaincoord: 31..70

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_211contigContig_211:118712..120493 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|42356mRNA_16538Tribonema minus UTEX_B_3156 mRNAContig_211 118710..120683 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|42356|CE42355_156 ID=Trimin1|42356|CE42355_156|Name=jgi.p|Trimin1|42356|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=356bp
MTKRARRPAASKDLEPIIVVKTPQPRGSNILLKKACVWCVKEKRRCGGGH
PCEQCLIRDRGDECGYEQRRKSGPRARVVGPPVGKGRKRKAAAAPTPELL
DADAAAPPVIDFARAVTPDLKPHNVAVVPADDSVACAKRLATAAAKGGAA
QEGESCAVERQALALLEVERGFSSQSSEYDVNTEVARLYALSSMQQQSYT
VVSNTAGAVDCGAGTVVDIKAIPCKYEPYSPGDDSNSGDSAGRLVEQFLL
FGKEDAALVVHGIPVATDENSYAQQETGYQVPVYEMPDAAPFADFSNLCG
ASLTRQRSLASAVDKLDDGDRNDDDLDVSVDMSDESFYPALSPIGMSAGA
KLAQR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036864Zn2-C6_fun-type_DNA-bd_sf