Trimin1|348260|estExt_Genemark1.C_Ctg_210125 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|348260
Unique Name	Trimin1\|348260\|estExt_Genemark1.C_Ctg_210125
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	474

Homology

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BLAST of jgi.p|Trimin1|348260 vs. uniprot
Match: A0A835Z932_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z932_9STRA)

HSP 1 Score: 430 bits (1105), Expect = 3.800e-144
Identity = 473/473 (100.00%), Postives = 473/473 (100.00%), Query Frame = 0

Query:    1 MGCGFAMQVPGSRVRIVKLRPDMATEALARLIGPLVQRDDARVTISRDPTGRRKSQVTIEFTTAQEAVEAVQQLRGVVFDGAQLTVWRLDARDQPMDTPPGPSAANNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQGEPADAGNXXXXXXXXXXXXXXXXXGXSAGAAVALGIGAGNNNPAPAAGVAGPIPAALPFAPLAAAAIGGGGVAGSFNFALGDPMHMELQRAAHIDRDAEIRRLKQRCQEQLAVAQQANDIAQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSQLEGEAGRRALEQQXXXXXXXXXXXXXXXXXXXXXXXXLKRARQLSANRPGSTVVTEAAREGGGGSDVAAKGQEWT 473
            MGCGFAMQVPGSRVRIVKLRPDMATEALARLIGPLVQRDDARVTISRDPTGRRKSQVTIEFTTAQEAVEAVQQLRGVVFDGAQLTVWRLDARDQPMDTPPGPSAANNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQGEPADAGNXXXXXXXXXXXXXXXXXGXSAGAAVALGIGAGNNNPAPAAGVAGPIPAALPFAPLAAAAIGGGGVAGSFNFALGDPMHMELQRAAHIDRDAEIRRLKQRCQEQLAVAQQANDIAQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSQLEGEAGRRALEQQXXXXXXXXXXXXXXXXXXXXXXXXLKRARQLSANRPGSTVVTEAAREGGGGSDVAAKGQEWT
Sbjct:    1 MGCGFAMQVPGSRVRIVKLRPDMATEALARLIGPLVQRDDARVTISRDPTGRRKSQVTIEFTTAQEAVEAVQQLRGVVFDGAQLTVWRLDARDQPMDTPPGPSAANNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQGEPADAGNXXXXXXXXXXXXXXXXXGXSAGAAVALGIGAGNNNPAPAAGVAGPIPAALPFAPLAAAAIGGGGVAGSFNFALGDPMHMELQRAAHIDRDAEIRRLKQRCQEQLAVAQQANDIAQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSQLEGEAGRRALEQQXXXXXXXXXXXXXXXXXXXXXXXXLKRARQLSANRPGSTVVTEAAREGGGGSDVAAKGQEWT 473

[Close]

BLAST of jgi.p|Trimin1|348260 vs. uniprot
Match: A0A835ZB87_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB87_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 3.800e-10
Identity = 42/88 (47.73%), Postives = 51/88 (57.95%), Query Frame = 0

Query:    5 FAMQVPGSRVRIVKLRPDMATEALARLIGPLVQRDDARVTISRDPTGRRKSQVTIEFTTAQEAVEAVQQLRGVVFDGAQLTVWRLDAR 92
             + +V GSRV I  L+P    E L    G   QR  A V ISRD  G      TI F TAQEA+ A+Q L+ V FDGA+LT+ RLDA+
Sbjct:    1 MSSKVSGSRVHISGLQPYATEEQLGGRFGRFAQRGPAAVEISRDFKGDCDGSATIIFQTAQEAISAIQALKDVEFDGARLTMCRLDAQ 88

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|348260 vs. uniprot

BLAST of jgi.p|Trimin1|348260 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835Z932_9STRA	3.800e-144	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835ZB87_9STRA	3.800e-10	47.73	RRM domain-containing protein n=1 Tax=Tribonema mi...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 418..445
None	No IPR available	COILS	Coil	Coil	coord: 302..333
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 89..122
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 137..168
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..122
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 405..419
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 404..473
None	No IPR available	CDD	cd00590	RRM_SF	coord: 42..86 e-value: 2.24513E-6 score: 43.4477
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 6..88 e-value: 1.6E-7 score: 33.3
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 41..119

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_21	contig	Contig_21:1242606..1251069 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|348260	mRNA_7231	Tribonema minus UTEX_B_3156	mRNA	Contig_21 1242507..1251069 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|348260|estExt_Genemark1.C_Ctg_210125 ID=Trimin1|348260|estExt_Genemark1.C_Ctg_210125|Name=jgi.p|Trimin1|348260|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=474bp
MGCGFAMQVPGSRVRIVKLRPDMATEALARLIGPLVQRDDARVTISRDPT
GRRKSQVTIEFTTAQEAVEAVQQLRGVVFDGAQLTVWRLDARDQPMDTPP
GPSAANNGSGGDNSGSGSGSMSAAAANGASAAQSAGGSASSTTVAGGPAD
GSDSGGDGGGSGAGSDNDSGGGDAAVVIVAAAAAAVLQSAGGSASSTAAP
QGEPADAGNNGSAAAGAAAAAGAAAPGGSAGAAVALGIGAGNNNPAPAAG
VAGPIPAALPFAPLAAAAIGGGGVAGSFNFALGDPMHMELQRAAHIDRDA
EIRRLKQRCQEQLAVAQQANDIAQSERAAAQQAAQLVAAHVARFAVLDQR
ADSDRARLAQADRACQGSEQALAQAQLTVAGLLDSHVRAERAVAAGSQLE
GEAGRRALEQQRAHEAAAARASDEAQAATDAARRALKRARQLSANRPGST
VVTEAAREGGGGSDVAAKGQEWT*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf