mRNA_7205 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|41960
Unique NamemRNA_7205
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|41960 vs. uniprot
Match: A0A836CHS6_9STRA (Putative cruciform DNA binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHS6_9STRA)

HSP 1 Score: 127 bits (318), Expect = 1.220e-34
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 3 
Query:   84 MSSSGPSKVTGTKDEVLGSAKATIGSTIGNHKMEAEGNAQHQHGTLEAHAATAKQQAQXXXXXXXXXXXXXXXXXXXXXXXXXXXEVNKAKGQGKMDTA 380
            MSSSGPSKVTGTKDEVLGSAKATIGSTIGNHKMEAEGNAQHQHGTLEAHAATAKQQAQXXXXXXXXXXXXXXXXXXXXXXXXXXXEVNKAKGQGKMDTA
Sbjct:    1 MSSSGPSKVTGTKDEVLGSAKATIGSTIGNHKMEAEGNAQHQHGTLEAHAATAKQQAQXXXXXXXXXXXXXXXXXXXXXXXXXXXEVNKAKGQGKMDTA 99
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BLAST of jgi.p|Trimin1|41960 vs. uniprot
Match: A0A835Z1D8_9STRA (Putative cruciform DNA binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1D8_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 6.140e-18
Identity = 42/58 (72.41%), Postives = 48/58 (82.76%), Query Frame = 3 
Query:   84 MSSSGPSKVTGTKDEVLGSAKATIGSTIGNHKMEAEGNAQHQHGTLEAHAATAKQQAQ 257
            MSSSGPSK++ TKD+V+G  KAT+G TIGNH MEAEGN QH HGT E HAATAKQ A+
Sbjct:    1 MSSSGPSKISATKDQVVGQVKATVGKTIGNHTMEAEGNMQHTHGTAEKHAATAKQTAE 58
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BLAST of jgi.p|Trimin1|41960 vs. uniprot
Match: A0A835YNR6_9STRA (Putative cruciform DNA binding protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNR6_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 4.820e-17
Identity = 43/55 (78.18%), Postives = 50/55 (90.91%), Query Frame = 3 
Query:   84 MSSSGPSKVTGTKDEVLGSAKATIGSTIGNHKMEAEGNAQHQHGTLEAHAATAKQ 248
            MSSSGPSK+TGTKDE+LGSAKATIGSTIGNH+MEAEG+ Q++ GT E +AA AKQ
Sbjct:    1 MSSSGPSKMTGTKDEILGSAKATIGSTIGNHQMEAEGHTQNKAGTAEKNAAAAKQ 55
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BLAST of jgi.p|Trimin1|41960 vs. uniprot
Match: A0A835Z1U0_9STRA (DNA binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1U0_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.350e-16
Identity = 68/99 (68.69%), Postives = 76/99 (76.77%), Query Frame = 3 
Query:   84 MSSSGPSKVTGTKDEVLGSAKATIGSTIGNHKMEAEGNAQHQHGTLEAHAATAKQQAQXXXXXXXXXXXXXXXXXXXXXXXXXXXEVNKAKGQGKMDTA 380
            MSSSGPSK+  TKD+V+G  KAT+G TIGNH+MEAEGN QHQHGT E   A AKQ+ +    XXXXXXXXXXXXXXXXXXXXXXX     KG+ K DTA
Sbjct:    1 MSSSGPSKINATKDQVIGQVKATVGKTIGNHQMEAEGNVQHQHGTTEKEVAAAKQKGEGLVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGKAKQDTA 99
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BLAST of jgi.p|Trimin1|41960 vs. uniprot
Match: A0A835YX54_9STRA (Putative cruciform DNA binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX54_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.900e-16
Identity = 43/58 (74.14%), Postives = 51/58 (87.93%), Query Frame = 3 
Query:   84 MSSSGPSKVTGTKDEVLGSAKATIGSTIGNHKMEAEGNAQHQHGTLEAHAATAKQQAQ 257
            MSSSGPSK+TGTKDEVLGSAKATIGSTIGNH+MEAEG+ Q++ GT +  AA  KQ+A+
Sbjct:    1 MSSSGPSKMTGTKDEVLGSAKATIGSTIGNHQMEAEGHTQNKGGTAQKEAAGTKQKAE 58
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BLAST of jgi.p|Trimin1|41960 vs. uniprot
Match: A0A835Z2J6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2J6_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.530e-9
Identity = 34/57 (59.65%), Postives = 40/57 (70.18%), Query Frame = 3 
Query:   84 MSSSGPSKVTGTKDEVLGSAKATIGSTIGNHKMEAEGNAQHQHGTLEAHAATAKQQA 254
            M SSGP KV  T+D+V+G  K T+G TIGNH+MEAEG+ Q  HGT E  AA AK  A
Sbjct:    1 MISSGPIKVLATRDQVVGQVKVTVGKTIGNHRMEAEGHKQQDHGTAEKQAAAAKHTA 57
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|41960 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A836CHS6_9STRA1.220e-34100.00Putative cruciform DNA binding protein n=1 Tax=Tri... [more]
A0A835Z1D8_9STRA6.140e-1872.41Putative cruciform DNA binding protein n=1 Tax=Tri... [more]
A0A835YNR6_9STRA4.820e-1778.18Putative cruciform DNA binding protein n=2 Tax=Tri... [more]
A0A835Z1U0_9STRA1.350e-1668.69DNA binding protein n=1 Tax=Tribonema minus TaxID=... [more]
A0A835YX54_9STRA1.900e-1674.14Putative cruciform DNA binding protein n=1 Tax=Tri... [more]
A0A835Z2J6_9STRA1.530e-959.65Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_21contigContig_21:931561..934938 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|41960|CE41959_88
Max annot lvl4751|Fungi
EggNOG OGs2E835@1|root,2SEKR@2759|Eukaryota,3AC5S@33154|Opisthokonta,3P9IK@4751|Fungi
Evalue0.000679
Seed ortholog36080.S2KBU4
Hectar predicted targeting categoryother localisation
TranscriptId42282
TrackFilteredModels1
ProteinId41960
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|41960gene_7205Tribonema minus UTEX_B_3156 geneContig_21 931561..934938 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|41960Trimin1|41960|CE41959_88Tribonema minus UTEX_B_3156 polypeptideContig_21 931644..934742 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7205_1exon_7205_1Tribonema minus UTEX_B_3156 exonContig_21 931561..931667 +
exon_7205_2exon_7205_2Tribonema minus UTEX_B_3156 exonContig_21 931990..932074 +
exon_7205_3exon_7205_3Tribonema minus UTEX_B_3156 exonContig_21 932646..932743 +
exon_7205_4exon_7205_4Tribonema minus UTEX_B_3156 exonContig_21 933431..933502 +
exon_7205_5exon_7205_5Tribonema minus UTEX_B_3156 exonContig_21 934722..934938 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_7205UTR5_7205Tribonema minus UTEX_B_3156 five_prime_UTRContig_21 931561..931643 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7205CDS_7205Tribonema minus UTEX_B_3156 CDSContig_21 931644..931667 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_7205UTR3_7205Tribonema minus UTEX_B_3156 three_prime_UTRContig_21 934743..934938 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7205 ID=mRNA_7205|Name=jgi.p|Trimin1|41960|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=579bp|location=Sequence derived from alignment at Contig_21:931561..934938+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTACGCTACTGCGCTGCTACACGCATCGACATCTGACATACCTGGACACT
GGAGTATACCAAAGCAGTCCGCACACACGGCATATGTCTTCATCAGGCCC
CAGCAAGGTGACTGGCACCAAGGACGAAGTTCTTGGCTCAGCCAAGGCAA
CTATTGGGAGCACGATTGGAAACCACAAAATGGAGGCTGAGGGCAACGCA
CAGCACCAGCACGGTACCTTGGAAGCCCACGCTGCTACCGCCAAGCAGCA
GGCCCAGGGCGCAGGCGACCACGTCTATGGTCACCTCCAGAAGGCGACAG
GACAGGTGCTGGGCAATGAGAAAATGCAGATGGAGGGGGAGGTGAACAAG
GCCAAGGGGCAGGGGAAAATGGACACGGCTTAAAAGGGAGTTAAGCCTTC
AGCAATGTCGTAAATATGGACGGGTGTGGAAGCATTGGAGCTTAAGGAAC
CAGGATGATTTCCCGGCCTTGGGACGCTTTGCGCCGAGCTAGATGAGCCC
CTCTCGGGCTCGTGTGTGTACAGTACATTACAATGCCAGAGTGGCGTGTG
CTTGAAATGGCGGAGAAATAAGAACCACA
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protein sequence of jgi.p|Trimin1|41960

>Trimin1|41960|CE41959_88 ID=Trimin1|41960|CE41959_88|Name=jgi.p|Trimin1|41960|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=100bp
MSSSGPSKVTGTKDEVLGSAKATIGSTIGNHKMEAEGNAQHQHGTLEAHA
ATAKQQAQGAGDHVYGHLQKATGQVLGNEKMQMEGEVNKAKGQGKMDTA*
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mRNA from alignment at Contig_21:931561..934938+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7205 ID=mRNA_7205|Name=jgi.p|Trimin1|41960|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3378bp|location=Sequence derived from alignment at Contig_21:931561..934938+ (Tribonema minus UTEX_B_3156 )
CTACGCTACTGCGCTGCTACACGCATCGACATCTGACATACCTGGACACT
GGAGTATACCAAAGCAGTCCGCACACACGGCATATGTCTTCATCAGGCCC
CAGCAAGGTAAGCACGAAGTCACGTCGGTGCACCGAACTGATGAAGGCGG
GCGTACACTTGTCGTCACTCGCGGCAGCGCATGCATGAGTGCCTGTCAGC
ACAATTTTGTAGTGTGCGTCATTGTGGTTCTGCTCACGGCATGCCACGTT
CCGACTGCTTGCAGAGGTGTTGCTCTCCGCTTTCGCAGCTTGCACATGTC
CAGCTTCTCAGTCGCTTCACGCCCTCACAGCAGCAGACACCATGCTGTCA
AAGCTTATCAGCAACTGATTGTCTCATATCGTTGACAGAAGTTATTAATC
ACCGAATTGCAACAAACTTCCTGCCTCAGGTGACTGGCACCAAGGACGAA
GTTCTTGGCTCAGCCAAGGCAACTATTGGGAGCACGATTGGAAACCACAA
AATGGAGGCTGAGGGTACGCAGCAAATTCGATCTCACTTTTGAACGTCAG
CATCACAGCTGCATGCATACATGAAATATCAGCATCGCGGCTTTGAGAGT
TGCTCAACCAGTCTGGATCAGTCGGTCTTTAGCAAGTACTGGAGCATCGC
TTCAGTTTTTTTACGGCAGTGTCATGGCGTGTCTTGAGCAGGTACACTCT
ACCCAAGCTGCTTTGCAATTCACCCGAGATTGATTGCAATTGCGCATCAC
GCCTGAGGGCCCACTGTACGTACGCTTTGTCGAAACACATGATGGCGAGG
CTATAGTCGTTGGTAGTGGCTACGCTGCTGCACGCAGAGGTAGCCCCCGT
TGCAAACTGCCACGCCTCAGCGCTTTCAGAAGCTTCAGTGCTCTGTTGTA
GCTAGTATGTGCGCTGACCTCTCTTCAAACCATACTGTCCTGATTTTCTG
GGTTGGCCTCAATGAGCACAAGTACACAGTTTTTGAGAACTTGAACCTGC
TTTGAAAACTGTGCTGCACATCCAATCACAATAGATGACCGCATTTCAAC
TCACCTTGGTTATTCAATCATGCCATGTGCGGCAGGCAACGCACAGCACC
AGCACGGTACCTTGGAAGCCCACGCTGCTACCGCCAAGCAGCAGGCCCAG
GGCGCAGGCGACCACGTCTATGGTCACCTCCAGGTGATGATGAGCAGCGC
TTGCTGTAACTGTTGTAACTGCTACAGTTCAGGGTGTTCAACGCCGTGGT
AGGCCCTGAACGCTTTCGTCTGCACGCGCAAGTGCGCCTGAACCCGATGT
TGGTGTGCTAGCCACAGTGAAGAGCATGATGGAGAGTGCGCCAGCGATAA
TGTCTTGTGAGCTGAGCACTGTCTTGTAAACCTTCGGCTACCCGTGTGGG
CAGCGTTCTGTTGAGGTCAATGCTGAGTGAGCGGTCGTGTTGTGGCTCCT
CGTGTACATCATGCAGGTTGAGCACTGCACAGTGAGCATCGAAGCCTGTC
ATGACGTGGCGCTAAGTGCGCACTGTGAGGTGGAAGTAGTACATGTGAGG
CAACTGGGTATATATGGTCAAGGAGGTCTGACCAAAAAGTGCGCACACGT
TTTGGTGCAGTCGGAGGTGCCCCTGTCTTGACAGCACCCGAGACCAATTG
CAGCATCGATCCAATATTGTCGGCTTTCAATGGTGATGCCTGCCTGCACG
CCTGTGCAGGTATACATCACTGAATCGCATCCTTAAACTGCTTTGTGTCA
TACGGGTCTGTTCTGGCTTTAATGCCGCTGCATTTCAGCAGTTGATTCTG
TAATGGAGAGACATTCAACAGTCCCTCGTGTTTTCTATGCCGTTTCTTGT
TCCCTGTTCAAATTGAGCAGAAGGCGACAGGACAGGTGCTGGGCAATGAG
AAAATGCAGATGGAGGGGGAGGTGAACAAGGCCAAGGGGCAGGTGAGCAC
TGACTCACATCTGAAATGCATCTTCATATTCTTGAAGTAGTACGTTGGGC
GGAAATGCAGATGGAGGGGATGTGAACAAGGCCAGGGGCAGGCGAGCACT
GACTCACTATTCAGAAGTGCCACTGCCGGCTGTCACGATGTCGTGACAAC
ACTCATACAGCCAACGCGTGTGCCAAGCACCCCCGAGCCGGCTGTGTCCG
CTCGTGTTTCTACTGTGCCGTTGTGAGAGGGTGTTGCAACGTAGACAGCT
AGCTGCTGCTCATGAGCCTGTTGCTCCACATCGGCAGAGGTAGACATCAA
GGTGACCAATGCAATAGAAGACAGATGCCAGGCCTGTGCTGCTACACGTG
ATTGTGACTGTGTTGTGGTCTGCGTACCGGCAAGTGTAACTGCCGGCAAG
TGTACTGCCGCGACCGTCAAGCGTGCATATGGCAATGAGAATATAACTGC
CACAAATGCTCCACTCCAACAGTGGTGCATGCGCCCGTTCGGTCGCTTGC
GAGCGTGTGTGACAGTGGGGCTTGTGACGTTGATCATGTCACAATCGGGT
TGCACAAAAGTGAAAGTTGGAGTTAATTTCCGAGTTCAAGTGTTCCTCTT
TTGGTGGAGTGTATGCTCGGAATCGAGCAGACTCACCACATACCCCACAA
ATACGCCCTTCGCTCAGCATATTGTCATGTCGAGGTCTGCTCAAGGCCTA
TTCCTTGTCGCCAAATGTGCCCCATATGCGCCGTATTTGTGTGGCCAAAC
ACGTTTTCGTGCAACCGTAATCATTTGGCATTCTGGCACCATTTTCGCCA
CAATTGATTGCCAGCATAGTGCATGCCTTACACAAATAGGTATTGGAAAA
CAGGGGCGGCGCACAGAAAGGATTAGGGTTAGCAGCCATGCCCTAACCGC
AGGCCGCCTGCAGGCGCTTCGGGCTCGGCGACAAACAAATGATGTGATCG
TTGATTCAAAATGAGGGTCAGGTTTCACTCTGCCGGGGCACCAGAACTCA
CCAGAAGGTGCTGAAGAAACCTTGGGAGTGAATTGTGCCCTACACCTAGG
GTATGCACTAAGCGTTGAACCGAGTCGTGTGCGTACAAGGCGACATGTCT
GTACATGTTTATACACATGGGGACGCGCCCGCCCGCCTTACCCAATGGCT
GAAGTTGAGGTGCTGGTGCTGACCAGTGCCCCCCGCTTGCCACGTCCTTC
ATTTTTTGCAGGGGAAAATGGACACGGCTTAAAAGGGAGTTAAGCCTTCA
GCAATGTCGTAAATATGGACGGGTGTGGAAGCATTGGAGCTTAAGGAACC
AGGATGATTTCCCGGCCTTGGGACGCTTTGCGCCGAGCTAGATGAGCCCC
TCTCGGGCTCGTGTGTGTACAGTACATTACAATGCCAGAGTGGCGTGTGC
TTGAAATGGCGGAGAAATAAGAACCACA
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Coding sequence (CDS) from alignment at Contig_21:931561..934938+

>mRNA_7205 ID=mRNA_7205|Name=jgi.p|Trimin1|41960|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=300bp|location=Sequence derived from alignment at Contig_21:931561..934938+ (Tribonema minus UTEX_B_3156 )
ATGTCTTCATCAGGCCCCAGCAAGGTGACTGGCACCAAGGACGAAGTTCT
TGGCTCAGCCAAGGCAACTATTGGGAGCACGATTGGAAACCACAAAATGG
AGGCTGAGGGCAACGCACAGCACCAGCACGGTACCTTGGAAGCCCACGCT
GCTACCGCCAAGCAGCAGGCCCAGGGCGCAGGCGACCACGTCTATGGTCA
CCTCCAGAAGGCGACAGGACAGGTGCTGGGCAATGAGAAAATGCAGATGG
AGGGGGAGGTGAACAAGGCCAAGGGGCAGGGGAAAATGGACACGGCTTAA
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