Trimin1|41960|CE41959_88 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|41960
Unique NameTrimin1|41960|CE41959_88
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length100
Homology
BLAST of jgi.p|Trimin1|41960 vs. uniprot
Match: A0A836CHS6_9STRA (Putative cruciform DNA binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHS6_9STRA)

HSP 1 Score: 127 bits (319), Expect = 3.040e-36
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0
Query:    1 MSSSGPSKVTGTKDEVLGSAKATIGSTIGNHKMEAEGNAQHQHGTLEAHAATAKQQAQXXXXXXXXXXXXXXXXXXXXXXXXXXXEVNKAKGQGKMDTA 99
            MSSSGPSKVTGTKDEVLGSAKATIGSTIGNHKMEAEGNAQHQHGTLEAHAATAKQQAQXXXXXXXXXXXXXXXXXXXXXXXXXXXEVNKAKGQGKMDTA
Sbjct:    1 MSSSGPSKVTGTKDEVLGSAKATIGSTIGNHKMEAEGNAQHQHGTLEAHAATAKQQAQXXXXXXXXXXXXXXXXXXXXXXXXXXXEVNKAKGQGKMDTA 99          
BLAST of jgi.p|Trimin1|41960 vs. uniprot
Match: A0A835Z1D8_9STRA (Putative cruciform DNA binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1D8_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 3.290e-19
Identity = 42/58 (72.41%), Postives = 48/58 (82.76%), Query Frame = 0
Query:    1 MSSSGPSKVTGTKDEVLGSAKATIGSTIGNHKMEAEGNAQHQHGTLEAHAATAKQQAQ 58
            MSSSGPSK++ TKD+V+G  KAT+G TIGNH MEAEGN QH HGT E HAATAKQ A+
Sbjct:    1 MSSSGPSKISATKDQVVGQVKATVGKTIGNHTMEAEGNMQHTHGTAEKHAATAKQTAE 58          
BLAST of jgi.p|Trimin1|41960 vs. uniprot
Match: A0A835YNR6_9STRA (Putative cruciform DNA binding protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNR6_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 2.670e-18
Identity = 43/55 (78.18%), Postives = 50/55 (90.91%), Query Frame = 0
Query:    1 MSSSGPSKVTGTKDEVLGSAKATIGSTIGNHKMEAEGNAQHQHGTLEAHAATAKQ 55
            MSSSGPSK+TGTKDE+LGSAKATIGSTIGNH+MEAEG+ Q++ GT E +AA AKQ
Sbjct:    1 MSSSGPSKMTGTKDEILGSAKATIGSTIGNHQMEAEGHTQNKAGTAEKNAAAAKQ 55          
BLAST of jgi.p|Trimin1|41960 vs. uniprot
Match: A0A835Z1U0_9STRA (DNA binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1U0_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 5.380e-18
Identity = 68/99 (68.69%), Postives = 76/99 (76.77%), Query Frame = 0
Query:    1 MSSSGPSKVTGTKDEVLGSAKATIGSTIGNHKMEAEGNAQHQHGTLEAHAATAKQQAQXXXXXXXXXXXXXXXXXXXXXXXXXXXEVNKAKGQGKMDTA 99
            MSSSGPSK+  TKD+V+G  KAT+G TIGNH+MEAEGN QHQHGT E   A AKQ+ +    XXXXXXXXXXXXXXXXXXXXXXX     KG+ K DTA
Sbjct:    1 MSSSGPSKINATKDQVIGQVKATVGKTIGNHQMEAEGNVQHQHGTTEKEVAAAKQKGEGLVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGKAKQDTA 99          
BLAST of jgi.p|Trimin1|41960 vs. uniprot
Match: A0A835YX54_9STRA (Putative cruciform DNA binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX54_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.080e-17
Identity = 43/58 (74.14%), Postives = 51/58 (87.93%), Query Frame = 0
Query:    1 MSSSGPSKVTGTKDEVLGSAKATIGSTIGNHKMEAEGNAQHQHGTLEAHAATAKQQAQ 58
            MSSSGPSK+TGTKDEVLGSAKATIGSTIGNH+MEAEG+ Q++ GT +  AA  KQ+A+
Sbjct:    1 MSSSGPSKMTGTKDEVLGSAKATIGSTIGNHQMEAEGHTQNKGGTAQKEAAGTKQKAE 58          
BLAST of jgi.p|Trimin1|41960 vs. uniprot
Match: A0A835Z2J6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2J6_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.110e-10
Identity = 34/57 (59.65%), Postives = 40/57 (70.18%), Query Frame = 0
Query:    1 MSSSGPSKVTGTKDEVLGSAKATIGSTIGNHKMEAEGNAQHQHGTLEAHAATAKQQA 57
            M SSGP KV  T+D+V+G  K T+G TIGNH+MEAEG+ Q  HGT E  AA AK  A
Sbjct:    1 MISSGPIKVLATRDQVVGQVKVTVGKTIGNHRMEAEGHKQQDHGTAEKQAAAAKHTA 57          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|41960 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A836CHS6_9STRA3.040e-36100.00Putative cruciform DNA binding protein n=1 Tax=Tri... [more]
A0A835Z1D8_9STRA3.290e-1972.41Putative cruciform DNA binding protein n=1 Tax=Tri... [more]
A0A835YNR6_9STRA2.670e-1878.18Putative cruciform DNA binding protein n=2 Tax=Tri... [more]
A0A835Z1U0_9STRA5.380e-1868.69DNA binding protein n=1 Tax=Tribonema minus TaxID=... [more]
A0A835YX54_9STRA1.080e-1774.14Putative cruciform DNA binding protein n=1 Tax=Tri... [more]
A0A835Z2J6_9STRA1.110e-1059.65Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..99
IPR036629YjbJ superfamilySUPERFAMILY69047Hypothetical protein YjbJcoord: 7..60

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_21contigContig_21:931644..934742 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|41960mRNA_7205Tribonema minus UTEX_B_3156 mRNAContig_21 931561..934938 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|41960|CE41959_88 ID=Trimin1|41960|CE41959_88|Name=jgi.p|Trimin1|41960|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=100bp
MSSSGPSKVTGTKDEVLGSAKATIGSTIGNHKMEAEGNAQHQHGTLEAHA
ATAKQQAQGAGDHVYGHLQKATGQVLGNEKMQMEGEVNKAKGQGKMDTA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036629YjbJ_sf