mRNA_17293 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|149626
Unique NamemRNA_17293
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|149626 vs. uniprot
Match: A0A836CGP6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGP6_9STRA)

HSP 1 Score: 185 bits (469), Expect = 4.550e-59
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1
Query:    1 LARENAELLEQLKSELDGARQVEVKMAEISGLMSLFATRVAEQQEEMEAIYGAAMDAHDSLRRGGAHLGKAQQRGLAARKYYVAFMTVMTLLLLFLHLIAP 303
            LARENAELLEQLKSELDGARQVEVKMAEISGLMSLFATRVAEQQEEMEAIYGAAMDAHDSLRRGGAHLGKAQQRGLAARKYYVAFMTVMTLLLLFLHLIAP
Sbjct:    1 LARENAELLEQLKSELDGARQVEVKMAEISGLMSLFATRVAEQQEEMEAIYGAAMDAHDSLRRGGAHLGKAQQRGLAARKYYVAFMTVMTLLLLFLHLIAP 101          
BLAST of jgi.p|Trimin1|149626 vs. uniprot
Match: A0A7S3Y6Y2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6Y2_HETAK)

HSP 1 Score: 76.3 bits (186), Expect = 2.820e-14
Identity = 45/101 (44.55%), Postives = 63/101 (62.38%), Query Frame = 1
Query:    1 LARENAELLEQLKSELDGARQVEVKMAEISGLMSLFATRVAEQQEEMEAIYGAAMDAHDSLRRGGAHLGKAQQRGLAARKYYVAFMTVMTLLLLFLHLIAP 303
            L  EN  LL  L++ELD  +Q+E KMAEIS LMSLF+T+V EQQ E+E +   A  A  ++ +G  ++ KA +     RK YV F+  ++ +LLFLH   P
Sbjct:  231 LQEENHNLLADLQNELDSVKQIESKMAEISTLMSLFSTKVMEQQTEIEQLGTLAQKASTNIEQGNKYIDKASEIQGGFRKIYVTFIMTLSFILLFLHWYMP 331          
BLAST of jgi.p|Trimin1|149626 vs. uniprot
Match: A0A1J3H3J4_NOCCA (Syntaxin-81 n=2 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3H3J4_NOCCA)

HSP 1 Score: 60.1 bits (144), Expect = 1.840e-8
Identity = 34/86 (39.53%), Postives = 54/86 (62.79%), Query Frame = 1
Query:   31 QLKSELDGARQVEVKMAEISGLMSLFATRVAEQQEEMEAIYGAAMDAHDSLRRGGAHLGKAQQRGLAARKYYVAFMTVMTLLLLFL 288
            +L + LDGARQ+E K+ E+S L  L AT V +Q +++E IY  A++A +++  G   L +A QR   +R + + F  V+T  +LFL
Sbjct:  220 ELSNLLDGARQIETKIVEMSALNHLMATHVLQQAQQIEVIYYQALEATNNVELGNRELAQAIQRNRGSRTFLMLFFFVLTFSVLFL 305          
BLAST of jgi.p|Trimin1|149626 vs. uniprot
Match: A0A5N6PRH6_9ASTR (Syntaxin-18_N domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PRH6_9ASTR)

HSP 1 Score: 59.7 bits (143), Expect = 2.840e-8
Identity = 34/86 (39.53%), Postives = 54/86 (62.79%), Query Frame = 1
Query:   31 QLKSELDGARQVEVKMAEISGLMSLFATRVAEQQEEMEAIYGAAMDAHDSLRRGGAHLGKAQQRGLAARKYYVAFMTVMTLLLLFL 288
            +L S LDGAR  E KM E+S L  L +T V +Q +++E +Y  A++A  ++  G   L +A QR  ++R + + F+ V+TL +LFL
Sbjct:  203 ELSSLLDGARDTETKMVEMSALNHLMSTHVLQQAQQIEYLYDQAVEATKNVEMGNKELTQAIQRNSSSRTFLLLFLVVLTLSVLFL 288          
BLAST of jgi.p|Trimin1|149626 vs. uniprot
Match: V4MG35_EUTSA (Syntaxin-18_N domain-containing protein n=2 Tax=Eutrema salsugineum TaxID=72664 RepID=V4MG35_EUTSA)

HSP 1 Score: 59.3 bits (142), Expect = 4.030e-8
Identity = 34/86 (39.53%), Postives = 53/86 (61.63%), Query Frame = 1
Query:   31 QLKSELDGARQVEVKMAEISGLMSLFATRVAEQQEEMEAIYGAAMDAHDSLRRGGAHLGKAQQRGLAARKYYVAFMTVMTLLLLFL 288
            +L + LDGARQ E KM E+S L  L AT V +Q +++E +Y  A++A  ++  G   L +A QR  ++R + + F  V+T  +LFL
Sbjct:  313 ELSNLLDGARQTETKMVEMSALNHLMATHVLQQAQQIEFLYDQAVEATKNVELGNKELSQAIQRNSSSRTFLLLFFIVLTFSVLFL 398          
BLAST of jgi.p|Trimin1|149626 vs. uniprot
Match: SYP81_ARATH (Syntaxin-81 n=16 Tax=Brassicaceae TaxID=3700 RepID=SYP81_ARATH)

HSP 1 Score: 58.9 bits (141), Expect = 4.790e-8
Identity = 34/86 (39.53%), Postives = 53/86 (61.63%), Query Frame = 1
Query:   31 QLKSELDGARQVEVKMAEISGLMSLFATRVAEQQEEMEAIYGAAMDAHDSLRRGGAHLGKAQQRGLAARKYYVAFMTVMTLLLLFL 288
            +L + LDGARQ E KM E+S L  L AT V +Q +++E +Y  A++A  ++  G   L +A QR  ++R + + F  V+T  +LFL
Sbjct:  221 ELSNLLDGARQTETKMVEMSALNHLMATHVLQQAQQIEFLYDQAVEATKNVELGNKELSQAIQRNSSSRTFLLLFFFVLTFSVLFL 306          
BLAST of jgi.p|Trimin1|149626 vs. uniprot
Match: UPI0006A6FB1B (LOW QUALITY PROTEIN: syntaxin-81 n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=UPI0006A6FB1B)

HSP 1 Score: 52.0 bits (123), Expect = 1.240e-5
Identity = 32/86 (37.21%), Postives = 52/86 (60.47%), Query Frame = 1
Query:   31 QLKSELDGARQVEVKMAEISGLMSLFATRVAEQQEEMEAIYGAAMDAHDSLRRGGAHLGKAQQRGLAARKYYVAFMTVMTLLLLFL 288
            +L + LDGARQ E KM E+S L  L AT V +Q +++E +Y  A++A  ++      L +A +R  ++R + + F  V+T  +LFL
Sbjct:  178 ELSNLLDGARQTETKMVEMSALNHLMATHVLQQAQQIEFLYDQAVEATKNV-----ELSQAIRRNSSSRNFLLLFCFVLTFSVLFL 258          
BLAST of jgi.p|Trimin1|149626 vs. uniprot
Match: A0A565BGT8_9BRAS (PWWP domain-containing protein n=1 Tax=Arabis nemorensis TaxID=586526 RepID=A0A565BGT8_9BRAS)

HSP 1 Score: 52.0 bits (123), Expect = 1.630e-5
Identity = 28/71 (39.44%), Postives = 44/71 (61.97%), Query Frame = 1
Query:   31 QLKSELDGARQVEVKMAEISGLMSLFATRVAEQQEEMEAIYGAAMDAHDSLRRGGAHLGKAQQRGLAARKY 243
            +L + LDGARQ E KM E+S L  L AT V +Q +++E +Y  A++A  ++  G   L +A QR  ++R +
Sbjct:  220 ELSNLLDGARQTETKMVEMSALNHLMATHVLQQAQQIEFLYDQAVEATKNVELGNKELSQAIQRNSSSRTF 290          
BLAST of jgi.p|Trimin1|149626 vs. uniprot
Match: A0A0D3CRK1_BRAOL (PWWP domain-containing protein n=4 Tax=Brassica TaxID=3705 RepID=A0A0D3CRK1_BRAOL)

HSP 1 Score: 52.0 bits (123), Expect = 1.640e-5
Identity = 32/86 (37.21%), Postives = 52/86 (60.47%), Query Frame = 1
Query:   31 QLKSELDGARQVEVKMAEISGLMSLFATRVAEQQEEMEAIYGAAMDAHDSLRRGGAHLGKAQQRGLAARKYYVAFMTVMTLLLLFL 288
            +L + LDGARQ E KM E+S L  L AT V +Q +++E +Y  A++A  ++      L +A +R  ++R + + F  V+T  +LFL
Sbjct:  514 ELSNLLDGARQTETKMVEMSALNHLMATHVLQQAQQIEFLYDQAVEATKNV-----ELSQAIRRNSSSRNFLLLFCFVLTFSVLFL 594          
BLAST of jgi.p|Trimin1|149626 vs. uniprot
Match: A0A7S2G2T6_9DINO (Hypothetical protein n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2G2T6_9DINO)

HSP 1 Score: 48.1 bits (113), Expect = 8.540e-5
Identity = 27/87 (31.03%), Postives = 51/87 (58.62%), Query Frame = 1
Query:   22 LLEQLKSELDGARQVEVKMAEISGLMSLFATRVAEQQEEMEAIYGAAMDAHDSLRRGGAHLGKAQQRGLAARKYYVAFMTVMTLLLL 282
            LL   +++LD   + + K+ E++ L+SLF+T+V EQQE+++ I+  A ++ + +   G HL +A +   + R + V +     L LL
Sbjct:   28 LLAAYETDLDKIVETQAKLGEVANLVSLFSTKVVEQQEQVDNIHELAEESTEIIENAGKHLDRAVENRSSYRAWLVCWFVGSALFLL 114          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|149626 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A836CGP6_9STRA4.550e-59100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S3Y6Y2_HETAK2.820e-1444.55Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1J3H3J4_NOCCA1.840e-839.53Syntaxin-81 n=2 Tax=Noccaea caerulescens TaxID=107... [more]
A0A5N6PRH6_9ASTR2.840e-839.53Syntaxin-18_N domain-containing protein n=1 Tax=Mi... [more]
V4MG35_EUTSA4.030e-839.53Syntaxin-18_N domain-containing protein n=2 Tax=Eu... [more]
SYP81_ARATH4.790e-839.53Syntaxin-81 n=16 Tax=Brassicaceae TaxID=3700 RepID... [more]
UPI0006A6FB1B1.240e-537.21LOW QUALITY PROTEIN: syntaxin-81 n=1 Tax=Brassica ... [more]
A0A565BGT8_9BRAS1.630e-539.44PWWP domain-containing protein n=1 Tax=Arabis nemo... [more]
A0A0D3CRK1_BRAOL1.640e-537.21PWWP domain-containing protein n=4 Tax=Brassica Ta... [more]
A0A7S2G2T6_9DINO8.540e-531.03Hypothetical protein n=1 Tax=Alexandrium andersoni... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_204contigContig_204:96302..97705 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|149626|gw1.204.34.1
BRITEko00000,ko00001,ko04131
KEGG Pathwayko04130,ko04145,map04130,map04145
KEGG koko:K08492
GOsGO:0000149,GO:0003674,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005938,GO:0006810,GO:0006888,GO:0006890,GO:0006996,GO:0007029,GO:0007154,GO:0007267,GO:0007268,GO:0007274,GO:0007528,GO:0008150,GO:0009987,GO:0010256,GO:0010638,GO:0012505,GO:0016020,GO:0016043,GO:0016192,GO:0019904,GO:0023052,GO:0031201,GO:0031594,GO:0031984,GO:0032386,GO:0032388,GO:0032879,GO:0032991,GO:0033043,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045202,GO:0046907,GO:0048193,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050808,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060341,GO:0060627,GO:0060628,GO:0061024,GO:0061025,GO:0065007,GO:0071840,GO:0071944,GO:0090158,GO:0098796,GO:0098827,GO:0098916,GO:0099536,GO:0099537,GO:0099568,GO:1902115,GO:1902117,GO:1902953,GO:1903358
Preferred nameSTX18
Descriptionpositive regulation of ER to Golgi vesicle-mediated transport
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG3894@1|root,KOG3894@2759|Eukaryota
Evalue8.14e-22
Seed ortholog2880.D7G3X8
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-19_000920.1
TranscriptId149948
TrackFilteredModels1
ProteinId149626
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|149626gene_17293Tribonema minus UTEX_B_3156 geneContig_204 96302..97705 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17293_1exon_17293_1Tribonema minus UTEX_B_3156 exonContig_204 96302..96364 +
exon_17293_2exon_17293_2Tribonema minus UTEX_B_3156 exonContig_204 97466..97705 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17293CDS_17293Tribonema minus UTEX_B_3156 CDSContig_204 96302..96364 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|149626Trimin1|149626|gw1.204.34.1Tribonema minus UTEX_B_3156 polypeptideContig_204 96302..97705 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17293 ID=mRNA_17293|Name=jgi.p|Trimin1|149626|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=303bp|location=Sequence derived from alignment at Contig_204:96302..97705+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTGGCGCGCGAGAATGCGGAGCTGCTGGAGCAGCTCAAGAGCGAGCTGGA
CGGGGCGCGCCAGGTCGAGGTCAAAATGGCCGAGATCTCCGGCCTCATGT
CGCTGTTCGCGACGCGCGTCGCGGAGCAGCAGGAGGAGATGGAGGCCATC
TACGGCGCCGCGATGGACGCGCACGACAGCCTGCGGCGCGGCGGCGCGCA
CCTCGGCAAGGCGCAGCAGCGCGGTCTCGCGGCGCGCAAGTACTACGTCG
CGTTCATGACGGTCATGACGCTGCTGCTGCTGTTCCTGCACCTGATCGCG
CCG
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protein sequence of jgi.p|Trimin1|149626

>Trimin1|149626|gw1.204.34.1 ID=Trimin1|149626|gw1.204.34.1|Name=jgi.p|Trimin1|149626|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=101bp
LARENAELLEQLKSELDGARQVEVKMAEISGLMSLFATRVAEQQEEMEAI
YGAAMDAHDSLRRGGAHLGKAQQRGLAARKYYVAFMTVMTLLLLFLHLIA
P
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mRNA from alignment at Contig_204:96302..97705+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17293 ID=mRNA_17293|Name=jgi.p|Trimin1|149626|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1404bp|location=Sequence derived from alignment at Contig_204:96302..97705+ (Tribonema minus UTEX_B_3156 )
CTGGCGCGCGAGAATGCGGAGCTGCTGGAGCAGCTCAAGAGCGAGCTGGA CGGGGCGCGCCAGGTACTTCAATTTGTACTTCAACTTGTAGTTGGGACGT GCATTTTTGCAGTTTGAACTTCTTCTGCTGGAGCATCAAGAGCGAGCTGA ACGGGGTGCGCCAGGTACTTCAACACGTACTTCAACTTGTACTCGTGTTT TTCTGTCTGTGTTACCTATCCCTCACCCTTACACAACCCAGTTTGAACTT CAAGTGGTAGCTGGCACATGATGAAGTGATCACTTGATCGCACGGGTACC GCACGAATTGATGCTGCGGCGTTTCTGTGTGAAACAAGCATCAACGGGCA CGGGCATCGCATGAAGTGCTGCTGCGGCCTTTCTGTGCGACTCGCGTGCG CACGACGAACACGGCTCGTAACCACTTTCAGTAGCTCTCCCGCCGCCATC GCACCACAATGGGTGACGACAGTGAGAGCTGTCTCACTGATTCGTGCGCT GAGCAACTGGGCGTGGAATGCGGGTTGAGAACCCCGTGAAGTGGAATGCA GTTATAGAATCCCATGAGGAGTAGGTTGAGCGTCCCTTACAGCATGGTGC CTCTGCAGACTGCAGACCTGCCTGCGAGAGCAGCTGTCGAGCGCAGTGGC ATGCATATACGCACCTCACTCGCCCTTGAATTTGATCTTCATCTTCATCT TGCCGCTGCCCACGTGCGCGCGCGCGTGCGCCGCAGGCCGAGGTCAAGAC GGCGGAGATATCCGGCCTCATGTCGCTATTTGCGACGCGCGTCGCGGAGC GGCAGGAGGAGATGTCGGCGTTCGCAACATACTTGCGTCGCGTCGCGGTG ACTTGCGCGCGTGCGTTACTGACGCTCATTCGCGCTCGACCTCGCCGCTG CAGGTCCAGGTCAAGATGTCAGAGATCTCGGGCCTCATGTCGGTGTTCGC GGCACGCGTCGCGTCGCGAGGTCTAGCGCGCCTGCGCTACTGACGCTCAT TCGCGATCGATCTTGCCGCCCACGTATGCACTTGCGCGTCGCAGGTTGAG GTCAAAATGGCCGAGATCTCGGGCCTCACGTCCGTGTTTGCGGCGCGCAT CGCGTCGCGATACTCGCGCGCATGCGTTACTGACGCTCATCCGCGCTTGG CCTTTTCGCCGCAGGTCGAGGTCAAAATGGCCGAGATCTCCGGCCTCATG TCGCTGTTCGCGACGCGCGTCGCGGAGCAGCAGGAGGAGATGGAGGCCAT CTACGGCGCCGCGATGGACGCGCACGACAGCCTGCGGCGCGGCGGCGCGC ACCTCGGCAAGGCGCAGCAGCGCGGTCTCGCGGCGCGCAAGTACTACGTC GCGTTCATGACGGTCATGACGCTGCTGCTGCTGTTCCTGCACCTGATCGC GCCG
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Coding sequence (CDS) from alignment at Contig_204:96302..97705+

>mRNA_17293 ID=mRNA_17293|Name=jgi.p|Trimin1|149626|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=303bp|location=Sequence derived from alignment at Contig_204:96302..97705+ (Tribonema minus UTEX_B_3156 )
CTGGCGCGCGAGAATGCGGAGCTGCTGGAGCAGCTCAAGAGCGAGCTGGA
CGGGGCGCGCCAGGTCGAGGTCAAAATGGCCGAGATCTCCGGCCTCATGT
CGCTGTTCGCGACGCGCGTCGCGGAGCAGCAGGAGGAGATGGAGGCCATC
TACGGCGCCGCGATGGACGCGCACGACAGCCTGCGGCGCGGCGGCGCGCA
CCTCGGCAAGGCGCAGCAGCGCGGTCTCGCGGCGCGCAAGTACTACGTCG
CGTTCATGACGGTCATGACGCTGCTGCTGCTGTTCCTGCACCTGATCGCG
CCG
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