mRNA_15780 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|150377 vs. uniprot
Match: A0A835Z2Q0_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2Q0_9STRA) HSP 1 Score: 296 bits (759), Expect = 6.390e-102 Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 1 Query: 1 WNEDEDERLRCAVATFGGKSWPRAAAAVGTKTATQCMQRWRRALQPDMRKGRWRDEEDALLLDLMTRGHDSWSEFARHIPGRSAKQCRERWRHHLDPAVSRARFTPAEDAVVVAMQAARGNAWARIAARLPGRTENTVKTRWTA 432 WNEDEDERLRCAVATFGGKSWPRAAAAVGTKTATQCMQRWRRALQPDMRKGRWRDEEDALLLDLMTRGHDSWSEFARHIPGRSAKQCRERWRHHLDPAVSRARFTPAEDAVVVAMQAARGNAWARIAARLPGRTENTVKTRWTA Sbjct: 1 WNEDEDERLRCAVATFGGKSWPRAAAAVGTKTATQCMQRWRRALQPDMRKGRWRDEEDALLLDLMTRGHDSWSEFARHIPGRSAKQCRERWRHHLDPAVSRARFTPAEDAVVVAMQAARGNAWARIAARLPGRTENTVKTRWTA 144
BLAST of jgi.p|Trimin1|150377 vs. uniprot
Match: A0A835Z4C0_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4C0_9STRA) HSP 1 Score: 185 bits (469), Expect = 1.540e-57 Identity = 85/142 (59.86%), Postives = 110/142 (77.46%), Query Frame = 1 Query: 1 WNEDEDERLRCAVATFGGKSWPRAAAAVGTKTATQCMQRWRRALQPDMRKGRWRDEEDALLLDLMTRGHDSWSEFARHIPGRSAKQCRERWRHHLDPAVSRARFTPAEDAVVVAMQAARGNAWARIAARLPGRTENTVKTRW 426 W+ +ED+RLR V F ++W R +A VGTK A QCMQRW+R+L+PD++KGRW EEDALL++L+T+G+ +W+E + I GRSAKQCRERW HHL+PAV++ FTP ED +V+ QAA GN W+ IAA LPGRTEN VK RW Sbjct: 11 WSPEEDDRLRRGVDMFAARNWRRISAVVGTKKAVQCMQRWKRSLRPDLKKGRWTQEEDALLIELITQGYKTWAELSNRIAGRSAKQCRERWTHHLNPAVNKDVFTPEEDWTIVSTQAAIGNRWSHIAAMLPGRTENAVKIRW 152
BLAST of jgi.p|Trimin1|150377 vs. uniprot
Match: A0A835YK87_9STRA (Homeodomain-like protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK87_9STRA) HSP 1 Score: 185 bits (469), Expect = 2.190e-57 Identity = 87/142 (61.27%), Postives = 108/142 (76.06%), Query Frame = 1 Query: 1 WNEDEDERLRCAVATFGGKSWPRAAAAVGTKTATQCMQRWRRALQPDMRKGRWRDEEDALLLDLMTRGHDSWSEFARHIPGRSAKQCRERWRHHLDPAVSRARFTPAEDAVVVAMQAARGNAWARIAARLPGRTENTVKTRW 426 W+ +ED RL AV TF K+W R +A VGTK A QCMQRWRR+L+PD++KGRW EEDALL++L+T+G +W E + I GRSAKQCRERW HHLDPAV++ F P ED ++++ QAA GN W+ IAA LPGRTEN VK RW Sbjct: 22 WSPEEDGRLTRAVETFDEKNWRRISAVVGTKKAVQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQCRERWTHHLDPAVNKDVFAPEEDWLIISTQAAVGNRWSHIAAMLPGRTENAVKVRW 163
BLAST of jgi.p|Trimin1|150377 vs. uniprot
Match: A0A836C964_9STRA (Ternary protein-Dna Complex3 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C964_9STRA) HSP 1 Score: 156 bits (394), Expect = 1.340e-46 Identity = 76/117 (64.96%), Postives = 91/117 (77.78%), Query Frame = 1 Query: 82 VGTKTATQCMQRWRRALQPDMRKGRWRDEEDALLLDLMTRGHDSWSEFARHIPGRSAKQ--CRERWRHHLDPAVSRARFTPAEDAVVVAMQAARGNAWARIAARLPGRTENTVKTRW 426 VGTK A QCMQRWRR+L+PD++KGRW EEDALL++L+T+G +W E + I GRSAKQ CRERW HHLDPAVS+ FT ED ++V+ QAA GN W+ IAA LPGRTEN VK RW Sbjct: 2 VGTKKAVQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQIECRERWTHHLDPAVSKDSFTLEEDWLIVSTQAAVGNRWSHIAAMLPGRTENAVKVRW 118
BLAST of jgi.p|Trimin1|150377 vs. uniprot
Match: A0A6H5K458_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K458_9PHAE) HSP 1 Score: 156 bits (394), Expect = 1.200e-42 Identity = 69/142 (48.59%), Postives = 94/142 (66.20%), Query Frame = 1 Query: 1 WNEDEDERLRCAVATFGGKSWPRAAAAVGTKTATQCMQRWRRALQPDMRKGRWRDEEDALLLDLMTRGHDSWSEFARHIPGRSAKQCRERWRHHLDPAVSRARFTPAEDAVVVAMQAARGNAWARIAARLPGRTENTVKTRW 426 W+ +EDERLR AV + G SW AA V T+ QC+QRW++ L P + KG+W EED LL+ ++ GH +W + +PGR++KQCRERW HHLDP + + +T ED ++V++Q GN WA+IA L GRTEN K RW Sbjct: 71 WSPEEDERLRAAVERYHGTSWKEIAAEVKTRNHVQCLQRWKKVLTPGLVKGQWTPEEDKLLVSIVNEGHKNWGSLSARVPGRTSKQCRERWCHHLDPRIVKGGWTEEEDQIIVSLQQQMGNKWAKIAQHLDGRTENATKIRW 212
BLAST of jgi.p|Trimin1|150377 vs. uniprot
Match: D0NJN5_PHYIT (Myb-like DNA-binding protein, putative n=2 Tax=Phytophthora TaxID=4783 RepID=D0NJN5_PHYIT) HSP 1 Score: 149 bits (376), Expect = 2.490e-42 Identity = 69/142 (48.59%), Postives = 94/142 (66.20%), Query Frame = 1 Query: 1 WNEDEDERLRCAVATFGGKSWPRAAAAVGTKTATQCMQRWRRALQPDMRKGRWRDEEDALLLDLMTRGHDSWSEFARHIPGRSAKQCRERWRHHLDPAVSRARFTPAEDAVVVAMQAARGNAWARIAARLPGRTENTVKTRW 426 W +ED++LR AV G ++W A V + TQC+QRW + L P + KG WR EED LL +L+ G +W + A IPGR++KQCRERW +HLDP++ R ++P ED +++ QA GN W+ IAA LPGRTE+ VK RW Sbjct: 85 WTPEEDDKLREAVGRHGERNWKSIAEEVPGRNHTQCLQRWTKVLAPGLVKGHWRPEEDDLLKELVAEGRKNWGQVATRIPGRTSKQCRERWYNHLDPSIIRGEYSPEEDRMILDAQARLGNRWSAIAAMLPGRTEDAVKIRW 226
BLAST of jgi.p|Trimin1|150377 vs. uniprot
Match: A0A7S2UU49_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UU49_9STRA) HSP 1 Score: 152 bits (383), Expect = 3.680e-42 Identity = 70/144 (48.61%), Postives = 95/144 (65.97%), Query Frame = 1 Query: 1 WNEDEDERLRCAVATFGGKSWPRAAAAVGTKTATQCMQRWRRALQPDMRKGRWRDEEDALLLDLMTRGHDSWSEFARHIPGRSAKQCRERWRHHLDPAVSRARFTPAEDAVVVAMQAARGNAWARIAARLPGRTENTVKTRWTA 432 W EDE LR AV +G +W A VGT+ QC+QRW++ L+P + KG+W EDA L+DL+ +G +W + A +PGR++KQCRERW HHLDP+V + +T ED ++ +Q+ GN W+ IA LPGRTEN VK RW A Sbjct: 30 WTLVEDEELRHAVRKYGESNWKDIAREVGTRNHVQCLQRWKKVLKPGLVKGQWSALEDAKLVDLVGKGFKNWGQLAAQMPGRTSKQCRERWSHHLDPSVKKGEYTTEEDNTILRLQSELGNKWSEIAKHLPGRTENAVKIRWKA 173
BLAST of jgi.p|Trimin1|150377 vs. uniprot
Match: H3G911_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G911_PHYRM) HSP 1 Score: 145 bits (366), Expect = 9.580e-42 Identity = 68/142 (47.89%), Postives = 93/142 (65.49%), Query Frame = 1 Query: 1 WNEDEDERLRCAVATFGGKSWPRAAAAVGTKTATQCMQRWRRALQPDMRKGRWRDEEDALLLDLMTRGHDSWSEFARHIPGRSAKQCRERWRHHLDPAVSRARFTPAEDAVVVAMQAARGNAWARIAARLPGRTENTVKTRW 426 W +EDE+LR AV G ++W A V + TQC+QRW + L P + KG WR +ED LL +L+ G +W + A IPGR++KQCRERW +HLDP++ R ++ ED +++ QA GN W+ IAA LPGRTE+ VK RW Sbjct: 12 WTPEEDEKLREAVNRHGERNWKSIAEEVPGRNHTQCLQRWTKVLAPGLVKGHWRPDEDDLLKELVAEGRKNWGQVATRIPGRTSKQCRERWYNHLDPSIVRGEYSAEEDRMILDAQARLGNRWSAIAAMLPGRTEDAVKIRW 153
BLAST of jgi.p|Trimin1|150377 vs. uniprot
Match: A0A8K1CQU9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CQU9_PYTOL) HSP 1 Score: 155 bits (392), Expect = 3.200e-41 Identity = 70/142 (49.30%), Postives = 95/142 (66.90%), Query Frame = 1 Query: 1 WNEDEDERLRCAVATFGGKSWPRAAAAVGTKTATQCMQRWRRALQPDMRKGRWRDEEDALLLDLMTRGHDSWSEFARHIPGRSAKQCRERWRHHLDPAVSRARFTPAEDAVVVAMQAARGNAWARIAARLPGRTENTVKTRW 426 W ++ED+RLR AV G ++W A V + TQC+QRW + L P + KG WR +ED LL +L+ G +W + A IPGR++KQCRERW +HLDP++ R +TP ED +++ QA GN W+ IAA LPGRTE+ VK RW Sbjct: 139 WTQEEDDRLRAAVGKHGERNWKSIAEEVPGRNHTQCLQRWTKVLAPGLVKGHWRPDEDELLKELVAEGRKNWGQVANRIPGRTSKQCRERWYNHLDPSIVRGEYTPEEDRIILEAQARLGNKWSTIAAMLPGRTEDAVKIRW 280
BLAST of jgi.p|Trimin1|150377 vs. uniprot
Match: A0A3M6VKU0_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VKU0_9STRA) HSP 1 Score: 146 bits (369), Expect = 3.690e-41 Identity = 68/142 (47.89%), Postives = 93/142 (65.49%), Query Frame = 1 Query: 1 WNEDEDERLRCAVATFGGKSWPRAAAAVGTKTATQCMQRWRRALQPDMRKGRWRDEEDALLLDLMTRGHDSWSEFARHIPGRSAKQCRERWRHHLDPAVSRARFTPAEDAVVVAMQAARGNAWARIAARLPGRTENTVKTRW 426 W EDE+LR AV G ++W A V + TQC+QRW + L P + KG WR +ED LL +L+ G +W + A IPGR++KQCRERW +HLDP++ R ++ AED +++ Q+ GN W+ IAA LPGRTE+ VK RW Sbjct: 102 WTPTEDEKLRDAVGRHGERNWKSIAEEVPGRNHTQCLQRWTKVLAPGLVKGHWRPDEDELLKELVAEGRKNWGQVATRIPGRTSKQCRERWYNHLDPSIIRGEYSQAEDRMILDAQSRLGNRWSAIAAMLPGRTEDAVKIRW 243 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|150377 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_15780 ID=mRNA_15780|Name=jgi.p|Trimin1|150377|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=432bp|location=Sequence derived from alignment at Contig_203:222426..223548+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. TGGAATGAGGACGAAGACGAGCGGCTGCGCTGCGCGGTCGCGACGTTCGGback to top protein sequence of jgi.p|Trimin1|150377 >Trimin1|150377|gw1.203.27.1 ID=Trimin1|150377|gw1.203.27.1|Name=jgi.p|Trimin1|150377|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=144bp WNEDEDERLRCAVATFGGKSWPRAAAAVGTKTATQCMQRWRRALQPDMRKback to top mRNA from alignment at Contig_203:222426..223548+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_15780 ID=mRNA_15780|Name=jgi.p|Trimin1|150377|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1123bp|location=Sequence derived from alignment at Contig_203:222426..223548+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_203:222426..223548+ >mRNA_15780 ID=mRNA_15780|Name=jgi.p|Trimin1|150377|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=432bp|location=Sequence derived from alignment at Contig_203:222426..223548+ (Tribonema minus UTEX_B_3156 )back to top |